View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20179_low_47 (Length: 369)

Name: NF20179_low_47
Description: NF20179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20179_low_47
NF20179_low_47
[»] chr5 (1 HSPs)
chr5 (15-354)||(36199393-36199733)
[»] chr7 (2 HSPs)
chr7 (202-353)||(28449405-28449556)
chr7 (299-354)||(12635951-12636006)
[»] chr1 (1 HSPs)
chr1 (207-353)||(48675085-48675231)
[»] chr2 (6 HSPs)
chr2 (295-350)||(996740-996795)
chr2 (302-353)||(410549-410600)
chr2 (267-353)||(821405-821491)
chr2 (293-353)||(973725-973785)
chr2 (299-353)||(1403805-1403859)
chr2 (178-235)||(821523-821579)
[»] chr3 (3 HSPs)
chr3 (303-349)||(43360019-43360065)
chr3 (299-353)||(45810203-45810257)
chr3 (184-231)||(45810090-45810135)


Alignment Details
Target: chr5 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 15 - 354
Target Start/End: Complemental strand, 36199733 - 36199393
Alignment:
Q  15 aaaattgaagagtattttacataatcttatttgattaactctgtattgaaattgaccatcaaagttttgcataagt-gtaattacattgtgtatgatatt 113  Q
    ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  36199733 aaaattgaagagtattttacatattcttatttgattaactctgtgttgaaattgaccatcaaagttttgcataagtagtaattacattgtctatgatatt 36199634  T
Q  114 catagctcaaaccatcaaattcaacaattttatggtagaatcttacgaaacaacggacatgaaagaaaactactacttacatatatcttatatgttatca 213  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36199633 catagctcaaaccatcaaattcaacaattttatggtagaaacttacgaaacaacggacatgaaagaaaactactacttacatatatcttatatgttatca 36199534  T
Q  214 ataaactgaaagttgacaagtttttgatgccattggagttaaggatagttccttttctatttgaggttgttctttgtcactccatattgtcatagtttgt 313  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36199533 ataaactgaaagttgacaagtttttgatgccattggaattaaggatagttccttttctatttgaggttgttctttgtcactccatattgtcatagtttgt 36199434  T
Q  314 aaaactcttgcattatttagaatatatcttgctaacataag 354  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  36199433 aaaactcttgcattatttagaatatatcttgctaacataag 36199393  T

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Target: chr7 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 202 - 353
Target Start/End: Original strand, 28449405 - 28449556
Alignment:
Q  202 tatatgttatcaataaactgaaagttgacaagtttttgatgccattggagttaaggatagttccttttctatttgaggttgttctttgtcactccatatt 301  Q
    |||| ||||||||||||||||||||||||||||| | |||||| |||||  | |||||| |||| |||||||||||||||||||||| |||||||||||     
T  28449405 tatacgttatcaataaactgaaagttgacaagttgtggatgcccttggacatgaggataattccctttctatttgaggttgttctttatcactccatatc 28449504  T
Q  302 gtcatagtttgtaaaactcttgcattatttagaatatatcttgctaacataa 353  Q
     |||| ||||||||||||||||||||||| |||||||||||||||| |||||    
T  28449505 atcatggtttgtaaaactcttgcattattaagaatatatcttgctagcataa 28449556  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 354
Target Start/End: Complemental strand, 12636006 - 12635951
Alignment:
Q  299 attgtcatagtttgtaaaactcttgcattatttagaatatatcttgctaacataag 354  Q
    |||||||| |||||||||||||||||||| || | |||||| ||||||| ||||||    
T  12636006 attgtcatggtttgtaaaactcttgcattcttcaaaatataccttgctagcataag 12635951  T

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Target: chr1 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 207 - 353
Target Start/End: Original strand, 48675085 - 48675231
Alignment:
Q  207 gttatcaataaactgaaagttgacaagtttttgatgccattggagttaaggatagttccttttctatttgaggttgttctttgtcactccatattgtcat 306  Q
    ||||||||||||||||||||||||| |||   || ||| |||||  | |||||| |||| |||||||||||||||| || ||||| ||||||||||||||    
T  48675085 gttatcaataaactgaaagttgacatgttgcagaggcccttggacatgaggataattccctttctatttgaggttggtccttgtcgctccatattgtcat 48675184  T
Q  307 agtttgtaaaactcttgcattatttagaatatatcttgctaacataa 353  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||    
T  48675185 agtttgtaaaacttttgcattatttagaatatatcttgctaacataa 48675231  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 295 - 350
Target Start/End: Original strand, 996740 - 996795
Alignment:
Q  295 ccatattgtcatagtttgtaaaactcttgcattatttagaatatatcttgctaaca 350  Q
    ||||||| |||| |||||||||| ||||||||| ||||||||||||||||||||||    
T  996740 ccatattttcatggtttgtaaaagtcttgcattctttagaatatatcttgctaaca 996795  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 302 - 353
Target Start/End: Complemental strand, 410600 - 410549
Alignment:
Q  302 gtcatagtttgtaaaactcttgcattatttagaatatatcttgctaacataa 353  Q
    ||||||||| |||||||||||||||| ||||||||| || ||||||||||||    
T  410600 gtcatagttcgtaaaactcttgcattctttagaataaattttgctaacataa 410549  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 267 - 353
Target Start/End: Complemental strand, 821491 - 821405
Alignment:
Q  267 tttctatttgaggttgttctttgtcactccatattgtcatagtttgtaaaactcttgcattatttagaatatatcttgctaacataa 353  Q
    ||||||||| || |||||  ||||  ||||| ||||||||||||| ||||||||| ||||| || |||||| || ||||||||||||    
T  821491 tttctatttcagattgtttattgttgctccagattgtcatagtttctaaaactctcgcattcttcagaataaatattgctaacataa 821405  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 293 - 353
Target Start/End: Original strand, 973725 - 973785
Alignment:
Q  293 ctccatattgtcatagtttgtaaaactcttgcattatttagaatatatcttgctaacataa 353  Q
    ||||| ||| |||||||||||||||||||||| || |  |||||| |||||||||||||||    
T  973725 ctccagattttcatagtttgtaaaactcttgcgttctccagaataaatcttgctaacataa 973785  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 353
Target Start/End: Complemental strand, 1403859 - 1403805
Alignment:
Q  299 attgtcatagtttgtaaaactcttgcattatttagaatatatcttgctaacataa 353  Q
    |||| |||||||| |||||||||||||||||  |||||| | |||||||||||||    
T  1403859 attgacatagtttctaaaactcttgcattatccagaataaaccttgctaacataa 1403805  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 235
Target Start/End: Complemental strand, 821579 - 821523
Alignment:
Q  178 gaaaactactacttacatatatcttatatgttatcaataaactgaaagttgacaagtt 235  Q
    ||||| || |||||||||| ||| ||||||||||||||||| |||||||||||| |||    
T  821579 gaaaaataatacttacata-atcgtatatgttatcaataaaatgaaagttgacatgtt 821523  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 349
Target Start/End: Complemental strand, 43360065 - 43360019
Alignment:
Q  303 tcatagtttgtaaaactcttgcattatttagaatatatcttgctaac 349  Q
    |||||||||| ||||||||||||||||| ||||| ||| ||||||||    
T  43360065 tcatagtttgcaaaactcttgcattattaagaatgtatgttgctaac 43360019  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 353
Target Start/End: Original strand, 45810203 - 45810257
Alignment:
Q  299 attgtcatagtttgtaaaactcttgcattatttagaatatatcttgctaacataa 353  Q
    ||||||||||||| ||||||| ||||||| || |||||| | |||||||||||||    
T  45810203 attgtcatagtttctaaaacttttgcattcttcagaataaaccttgctaacataa 45810257  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 231
Target Start/End: Original strand, 45810090 - 45810135
Alignment:
Q  184 tactacttacatatatcttatatgttatcaataaactgaaagttgaca 231  Q
    ||||||||||||||  | ||||||||||||||||| ||||||||||||    
T  45810090 tactacttacatat--catatatgttatcaataaattgaaagttgaca 45810135  T

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