View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20179_low_48 (Length: 360)
Name: NF20179_low_48
Description: NF20179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20179_low_48 |
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Alignment Details
Target: chr2 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 18 - 345
Target Start/End: Original strand, 26611829 - 26612156
Alignment:
| Q |
18 |
actctcgatgtttttcgacactcactagtcaaggatcgaactctagtccacatgctcaaattggtaattgataacttgtatacattgcacatcataggat |
117 |
Q |
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| T |
26611829 |
actctcgatgtttttcgacactcactagtcaaggatcaaactctagtccccatgctcaaattggtaattgataacttgtatacattgcacatcataagat |
26611928 |
T |
|
| Q |
118 |
ggtaacaaaaataatcacatcatgtattttatcttataaggtacaaacatcaatgtgaatgagtaatcaaacccatcaaaacttaagctaaagaatgaaa |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
26611929 |
ggtaacaaaaataatcacatcatgtattttatcttataaggtacaaacatcaatgtgaatgagtaatcaaacccaacaaaacttaagctaaagaatgaaa |
26612028 |
T |
|
| Q |
218 |
ttcagagctaaaccataaaaaacaagaactataaaatagtacttacttgtgcagacttaataggcaagtcctgtccagatattctcttaaaatgctcctt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26612029 |
ttcagagctaaaccataaaaaacaagaactataaaagagtacttacttgtgcagacttaataggcaagtcctgtccagatattctcttaaaatgctcctt |
26612128 |
T |
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| Q |
318 |
caacaacctcttagaatcatactctctg |
345 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
26612129 |
caacaacctcttagaatcatactctctg |
26612156 |
T |
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Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 255 - 345
Target Start/End: Original strand, 14661268 - 14661358
Alignment:
| Q |
255 |
agtacttacttgtgcagacttaataggcaagtcctgtccagatattctcttaaaatgctccttcaacaacctcttagaatcatactctctg |
345 |
Q |
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||||||||||||||||||||| ||||| ||||||| ||||| | ||||||||| ||||||||||||| ||||||||||||||||||||| |
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| T |
14661268 |
agtacttacttgtgcagacttgataggtaagtccttgccagaaagtctcttaaagtgctccttcaacagtctcttagaatcatactctctg |
14661358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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