View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20179_low_49 (Length: 353)
Name: NF20179_low_49
Description: NF20179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20179_low_49 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 317; Significance: 1e-179; HSPs: 11)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 18 - 334
Target Start/End: Original strand, 36188278 - 36188594
Alignment:
| Q |
18 |
cacagaggaaattactgcaagaaaaagggaaatcttaccataatggatacatgtctcggatataatacaaacacaagcatttgacagaatacaaaatctt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36188278 |
cacagaggaaattactgcaagaaaaagggaaatcttaccataatggatacatgtctcggatataatacaaacacaagcatttgacagaatacaaaatctt |
36188377 |
T |
|
| Q |
118 |
agttcatctatacctacaaaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttggacttatgattttcatcatct |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36188378 |
agttcatctatacctacaaaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttggacttatgattttcatcatct |
36188477 |
T |
|
| Q |
218 |
ctgctacaaacgctcttgttggaagagaatcatgtcatgtctctcacaattgtatcaatttatgaaccttcatttgctcagataaaacctccaaacttgt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36188478 |
ctgctacaaacgctcttgttggaagagaatcatgtcatgtctctcacaattgtatcaatttatgaaccttcatttgctcagataaaacctccaaacttgt |
36188577 |
T |
|
| Q |
318 |
agatgtgagcaatatct |
334 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
36188578 |
agatgtgagcaatatct |
36188594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 18 - 334
Target Start/End: Original strand, 36196595 - 36196912
Alignment:
| Q |
18 |
cacagaggaaattactgcaagaaaaaggg-aaatcttaccataatggatacatgtctcggatataatacaaacacaagcatttgacagaatacaaaatct |
116 |
Q |
| |
|
|||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36196595 |
cacagacgaaattactgcaagaaacaggggaaatcttaccataatggatacatgtctcggatataatacaaacacaagcatttgacagaatacaaaatct |
36196694 |
T |
|
| Q |
117 |
tagttcatctatacctacaaaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttggacttatgattttcatcatc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36196695 |
tagttcatctatacctacaaaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttggacttatgattttcatcatc |
36196794 |
T |
|
| Q |
217 |
tctgctacaaacgctcttgttggaagagaatcatgtcatgtctctcacaattgtatcaatttatgaaccttcatttgctcagataaaacctccaaacttg |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36196795 |
tctgctacaaacgctcttgttggaagagaatcatgtcatgtctctcacaattgtatcaatttatgaaccttcatttgctcagataaaacctccaaacttg |
36196894 |
T |
|
| Q |
317 |
tagatgtgagcaatatct |
334 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
36196895 |
tagatgtgagcaatatct |
36196912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 18 - 334
Target Start/End: Original strand, 36209719 - 36210027
Alignment:
| Q |
18 |
cacagaggaaattactgcaagaaa-aagggaaatcttaccataatggatacatgtctcggatataatacaaacacaagcatttgacagaatacaaaatct |
116 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36209719 |
cacagaggaaattactgcaagaaacaagggaaatcttaccataatggatacatgtatcggacataatacaaacacaagcatttgacagaatacaaaatct |
36209818 |
T |
|
| Q |
117 |
tagttcatctatacctacaaaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttggacttatgattttcatcatc |
216 |
Q |
| |
|
||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
36209819 |
tagttcatctataactgcaaa-gcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttcgacttcagattttcatcatc |
36209917 |
T |
|
| Q |
217 |
tctgctacaaacgctcttgttggaagagaatcatgtcatgtctctcacaattgtatcaatttatgaaccttcatttgctcagataaaacctccaaacttg |
316 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
36209918 |
tctgctacaaacgctcttgttggaagaaaatcatgccatgtctct--------tatcaatttatgaaccttcatttgcttggataaaacctccaaacttg |
36210009 |
T |
|
| Q |
317 |
tagatgtgagcaatatct |
334 |
Q |
| |
|
||||||| |||||||||| |
|
|
| T |
36210010 |
tagatgtcagcaatatct |
36210027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 176 - 334
Target Start/End: Original strand, 36202310 - 36202468
Alignment:
| Q |
176 |
tccaaacgatgtgcatgtttggacttatgattttcatcatctctgctacaaacgctcttgttggaagagaatcatgtcatgtctctcacaattgtatcaa |
275 |
Q |
| |
|
||||||| |||| ||||||| ||||| ||||||||||||||||||| |||||||||| || ||||||| |||| |||||||||| ||||||||||||| |
|
|
| T |
36202310 |
tccaaactatgttcatgtttcgacttcagattttcatcatctctgcttcaaacgctctagtaagaagagattcatttcatgtctctgacaattgtatcaa |
36202409 |
T |
|
| Q |
276 |
tttatgaaccttcatttgctcagataaaacctccaaacttgtagatgtgagcaatatct |
334 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||| |||||||||| |||||||||| |
|
|
| T |
36202410 |
tttatgaaccttcatttctttggataaaacctccaaatttgtagatgtcagcaatatct |
36202468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 83 - 334
Target Start/End: Original strand, 36207688 - 36207940
Alignment:
| Q |
83 |
tacaaacacaagcatttgacagaata-caaaatcttagttcatctatacctacaaaagcacttctcaacctctaatctctccaacatggtgttttccaaa |
181 |
Q |
| |
|
||||| ||||||||||| |||||| | |||||||||||||||| || | | ||||| ||| | | |||||||||||||||||||||||||||||| | | |
|
|
| T |
36207688 |
tacaagcacaagcatttaacagaaaaacaaaatcttagttcatatacaacaacaaat-cacatgtgaacctctaatctctccaacatggtgttttcgata |
36207786 |
T |
|
| Q |
182 |
cgatgtgcatgtttggacttatgattttcatcatctctgctacaaacgctcttgttggaagag-aatcatgtcatgtctctcacaattgtatcaatttat |
280 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||| || | ||| | || |||||||||| ||||||||||||||||| | |||||||| ||||||| |
|
|
| T |
36207787 |
tgatgtgcatgtttggacttcaaattttcatcaactctacttctaacacactggttggaagagaaatcatgtcatgtctctgataattgtattaatttat |
36207886 |
T |
|
| Q |
281 |
gaaccttcatttgctcagataaaacctccaaacttgtagatgtgagcaatatct |
334 |
Q |
| |
|
||||||||| || | |||||| ||||| | ||||||||||| |||||||||| |
|
|
| T |
36207887 |
caaccttcatatgtttggataaagcctccgagcttgtagatgtcagcaatatct |
36207940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 83 - 334
Target Start/End: Original strand, 36184500 - 36184756
Alignment:
| Q |
83 |
tacaaacacaagcatttgacagaata-caaaatcttagttcatctatacctacaaaagcacttctcaac----ctctaatctctccaacatggtgttttc |
177 |
Q |
| |
|
||||| ||||||||||| |||||| | ||||||||||||||||||| | | || ||||||||| | ||| ||||||||||||||||||||||| ||| |
|
|
| T |
36184500 |
tacaagcacaagcatttaacagaaaaacaaaatcttagttcatctacaacaac-aaagcacttgtgaacctctctctaatctctccaacatggtgtcttc |
36184598 |
T |
|
| Q |
178 |
caaacgatgtgcatgtttggacttatgattttcatcatctctgctacaaacgctcttgttggaag-agaatcatgtcatgtctctcacaattgtatcaat |
276 |
Q |
| |
|
| | ||| | ||||||||||||| ||||||||||| ||||||| | ||| |||| |||||||| | ||||||||||||||||| | |||||||||| | |
|
|
| T |
36184599 |
cgtatgatattcatgtttggacttcagattttcatcaactctgcttctaacactctagttggaagaaaaatcatgtcatgtctctgataattgtatcact |
36184698 |
T |
|
| Q |
277 |
ttatgaaccttcatttgctcagataaaacctccaaacttgtagatgtgagcaatatct |
334 |
Q |
| |
|
|||| ||||||||| || | ||||| ||||| | ||||| |||||||||||||||| |
|
|
| T |
36184699 |
ttatcaaccttcatatgtttggataatgcctccgagcttgttgatgtgagcaatatct |
36184756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 183 - 334
Target Start/End: Original strand, 36213218 - 36213369
Alignment:
| Q |
183 |
gatgtgcatgtttggacttatgattttcatcatctctgctacaaacgctcttgttggaagagaatcatgtcatgtctctcacaattgtatcaatttatga |
282 |
Q |
| |
|
||||||||||||||||||| ||||| |||| ||||||| ||||| || | ||| ||||||||||||||||||||||| | ||||| |||||||||||| |
|
|
| T |
36213218 |
gatgtgcatgtttggacttcaaatttttatcaactctgcttcaaacactttagtttgaagagaatcatgtcatgtctctgataattgaatcaatttatga |
36213317 |
T |
|
| Q |
283 |
accttcatttgctcagataaaacctccaaacttgtagatgtgagcaatatct |
334 |
Q |
| |
|
|||||||||| | ||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
36213318 |
gccttcatttgattggataaaacctccacacttgtagatgtgagtaatatct |
36213369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 108 - 331
Target Start/End: Original strand, 36200857 - 36201080
Alignment:
| Q |
108 |
acaaaatcttagttcatctatacctacaaaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttggacttatgatt |
207 |
Q |
| |
|
|||||||||||||||||||| ||| ||| | |||| | |||||| |||||| ||||||||||||| |||||| | |||||||||||||| ||| || |
|
|
| T |
36200857 |
acaaaatcttagttcatctacaccaacaca-gcacctgtcaaccactaatcactccaacatggtgctttccatatgatgtgcatgtttgaactacaagtt |
36200955 |
T |
|
| Q |
208 |
ttcatcatctctgctacaaacgctcttgttggaagagaa-tcatgtcatgtctctcacaattgtatcaatttatgaaccttcatttgctcagataaaacc |
306 |
Q |
| |
|
||| ||| ||||||| ||||| ||| || |||| |||| |||| |||||||||| | || ||| ||||||||||||| ||||||| || ||||||||| |
|
|
| T |
36200956 |
ttcgtcaactctgcttcaaacagtctagtaggaaaagaaatcatatcatgtctctgataactgtgtcaatttatgaactgtcatttgttcggataaaacc |
36201055 |
T |
|
| Q |
307 |
tccaaacttgtagatgtgagcaata |
331 |
Q |
| |
|
|||| |||| ||| ||||||||||| |
|
|
| T |
36201056 |
tccacacttttaggtgtgagcaata |
36201080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 120 - 201
Target Start/End: Original strand, 36198878 - 36198958
Alignment:
| Q |
120 |
ttcatctatacctacaaaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttggactt |
201 |
Q |
| |
|
|||||||||||||| |||||||||| ||| |||||||||||||||||| |||||||||||| ||||||||||||| ||||| |
|
|
| T |
36198878 |
ttcatctataccta-aaaagcacttaccaatctctaatctctccaacattgtgttttccaaaggatgtgcatgtttagactt |
36198958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 109 - 221
Target Start/End: Original strand, 36214722 - 36214833
Alignment:
| Q |
109 |
caaaatcttagttcatctatacctacaaaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttggacttatgattt |
208 |
Q |
| |
|
|||| ||||| || ||||||||| ||||| |||||| |||| |||||||||| ||||||| |||||||||||| | |||||||||||||||| |||| |
|
|
| T |
36214722 |
caaagtcttaattgatctataccaacaaa-gcacttgtcaatctctaatctccccaacattgtgttttccaaataaagtgcatgtttggacttcaaattt |
36214820 |
T |
|
| Q |
209 |
tcatcatctctgc |
221 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
36214821 |
tcaccatctctgc |
36214833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 236 - 319
Target Start/End: Original strand, 36198962 - 36199040
Alignment:
| Q |
236 |
ttggaagagaatcatgtcatgtctctcacaattgtatcaatttatgaaccttcatttgctcagataaaacctccaaacttgtag |
319 |
Q |
| |
|
|||||||| ||||||||||||||| | ||||||||| ||||||||||||||||| | ||||||| |||||||||||||| |
|
|
| T |
36198962 |
ttggaagataatcatgtcatgtct-----agttgtatcaagttatgaaccttcatttgtttggataaaatctccaaacttgtag |
36199040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University