View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20179_low_52 (Length: 340)

Name: NF20179_low_52
Description: NF20179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20179_low_52
NF20179_low_52
[»] chr2 (1 HSPs)
chr2 (12-310)||(4476116-4476415)
[»] chr7 (2 HSPs)
chr7 (11-168)||(4129822-4129973)
chr7 (59-91)||(6533609-6533641)
[»] chr8 (3 HSPs)
chr8 (272-326)||(40681998-40682052)
chr8 (23-91)||(27189805-27189874)
chr8 (251-319)||(40675721-40675789)
[»] chr6 (3 HSPs)
chr6 (19-91)||(19694176-19694249)
chr6 (106-169)||(2986246-2986309)
chr6 (12-83)||(29530892-29530964)
[»] chr4 (1 HSPs)
chr4 (12-83)||(38053970-38054042)


Alignment Details
Target: chr2 (Bit Score: 178; Significance: 6e-96; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 12 - 310
Target Start/End: Original strand, 4476116 - 4476415
Alignment:
Q  12 ataggaagaggtgcatttgacacacaatgttttgggatgtcaccat-gcttgaatttcaaaacatcgtattatgataacttagggttctagcatatatag 110  Q
    ||||||||||||  |||||||||||||||||||||||||||||||| |||||||||| |||||||  ||||||||||||||||||||||||    |||||    
T  4476116 ataggaagaggttgatttgacacacaatgttttgggatgtcaccatagcttgaattttaaaacataatattatgataacttagggttctag----tatag 4476211  T
Q  111 ttaagatgtcaactgctataattaatgtgtgtcacattcatcgtttatcaataaaaataattatgaagtatttaagatgnnnnnnnnctcaaacttgacc 210  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||     
T  4476212 ttaagatgtcaactgttataattaaagtgtgtcacattcatcgtttatcaataaaaataattatgaagtatttaagatgctttttttctcaaacttgaca 4476311  T
Q  211 taagacccataaaatgttagttaaggcgctgaaaacaagcatccctgcaaattagtaccaggttgcatcc----attagaggttgcactaagtttcattg 306  Q
    ||||||| ||||||||||||||| ||||||||| ||||||||| ||||||||||  |||||| |||||||    ||||||||||||||||||||||||||    
T  4476312 taagacctataaaatgttagttacggcgctgaacacaagcatcactgcaaattaaaaccaggctgcatccattaattagaggttgcactaagtttcattg 4476411  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 11 - 168
Target Start/End: Complemental strand, 4129973 - 4129822
Alignment:
Q  11 cataggaagaggtgcatttgacacacaatgttttgggatgtcaccatgcttgaatttcaaaacatcgtattatgataacttagggttctagcatatatag 110  Q
    ||||||| ||||||||||||||||||  |||||| |||| ||| || |   | || |||||| ||||||||||| |||||| |||| |   ||| |||||    
T  4129973 cataggatgaggtgcatttgacacacgttgttttaggatatcaacacga--gcatctcaaaagatcgtattatggtaacttggggtgc---cat-tatag 4129880  T
Q  111 ttaagatgtcaactgctataattaatgtgtgtcacattcatcgtttatcaataaaaat 168  Q
    || |||||||||| || || |||| |||||||||||||||| ||||||| | ||||||    
T  4129879 ttgagatgtcaaccgccatgattattgtgtgtcacattcattgtttatcgaaaaaaat 4129822  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 91
Target Start/End: Original strand, 6533609 - 6533641
Alignment:
Q  59 cttgaatttcaaaacatcgtattatgataactt 91  Q
    |||||||||||||||||||||||||||| ||||    
T  6533609 cttgaatttcaaaacatcgtattatgatgactt 6533641  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 326
Target Start/End: Original strand, 40681998 - 40682052
Alignment:
Q  272 gttgcatccattagaggttgcactaagtttcattggaatgttgaaaccaacaatc 326  Q
    ||||||| |||||||||||| |||||| | ||||||||||||||||||| |||||    
T  40681998 gttgcatgcattagaggttgaactaagctgcattggaatgttgaaaccatcaatc 40682052  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 91
Target Start/End: Original strand, 27189805 - 27189874
Alignment:
Q  23 tgcatttgacacacaatgttttgggatgtcaccatgcttg-aatttcaaaacatcgtattatgataactt 91  Q
    ||||||||||||||||||||||| ||| | | |||  ||| ||||||||||||| |||||||||||||||    
T  27189805 tgcatttgacacacaatgttttgcgatattagcatagttggaatttcaaaacatggtattatgataactt 27189874  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 319
Target Start/End: Original strand, 40675721 - 40675789
Alignment:
Q  251 atccctgcaaattagtaccaggttgcatccattagaggttgcactaagtttcattggaatgttgaaacc 319  Q
    |||||||||  |||||||   ||||||||||||||| |||| ||||| || ||||||||||||||||||    
T  40675721 atccctgcaggttagtactttgttgcatccattagaagttgaactaaattccattggaatgttgaaacc 40675789  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 19694176 - 19694249
Alignment:
Q  19 gaggtgcatttgacacacaatgttttgggatgtcaccat-gcttgaatttcaaaacatcgtattatgataactt 91  Q
    |||||| ||||||||||| || |||||||||| || ||| ||| | || |||||||||||||||||||||||||    
T  19694176 gaggtgtatttgacacacgatattttgggatgccagcatagctgggatgtcaaaacatcgtattatgataactt 19694249  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 106 - 169
Target Start/End: Complemental strand, 2986309 - 2986246
Alignment:
Q  106 tatagttaagatgtcaactgctataattaatgtgtgtcacattcatcgtttatcaataaaaata 169  Q
    ||||||| |||||||||| || |||||||| |||| | ||||||||||||||| || |||||||    
T  2986309 tatagttgagatgtcaaccgccataattaacgtgtataacattcatcgtttataaaaaaaaata 2986246  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 83
Target Start/End: Complemental strand, 29530964 - 29530892
Alignment:
Q  12 ataggaagaggtgcatttgacacacaatgttttgggatgtcaccat-gcttgaatttcaaaacatcgtattat 83  Q
    |||||| |||||| |||||||||||||| ||||||| || || ||| ||| |||| |||||| ||||||||||    
T  29530964 ataggatgaggtgtatttgacacacaatattttggggtgccagcatagctggaatgtcaaaatatcgtattat 29530892  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 38053970 - 38054042
Alignment:
Q  12 ataggaagaggtgcatttgacacacaatgttttgggatgtcaccat-gcttgaatttcaaaacatcgtattat 83  Q
    |||||| |||||| |||||||||||||| ||||||| || || ||| ||||| || |||||| ||||||||||    
T  38053970 ataggatgaggtgtatttgacacacaatattttggggtgccagcatagcttggatgtcaaaatatcgtattat 38054042  T

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