View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20179_low_53 (Length: 340)

Name: NF20179_low_53
Description: NF20179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20179_low_53
NF20179_low_53
[»] chr2 (17 HSPs)
chr2 (160-279)||(627350-627483)
chr2 (1-59)||(627585-627643)
chr2 (16-59)||(5001714-5001757)
chr2 (16-59)||(28612248-28612291)
chr2 (16-54)||(627629-627667)
chr2 (19-58)||(5001392-5001431)
chr2 (19-58)||(5013062-5013101)
chr2 (19-58)||(10129515-10129554)
chr2 (16-59)||(12898071-12898114)
chr2 (16-59)||(28611823-28611866)
chr2 (16-55)||(41995768-41995807)
chr2 (19-57)||(28612039-28612077)
chr2 (182-227)||(26632423-26632468)
chr2 (16-48)||(28612672-28612704)
chr2 (19-59)||(29549839-29549879)
chr2 (19-59)||(41326417-41326457)
chr2 (19-59)||(44543733-44543773)
[»] chr8 (20 HSPs)
chr8 (16-59)||(27853685-27853728)
chr8 (19-89)||(37198131-37198201)
chr8 (16-59)||(23828142-23828185)
chr8 (16-59)||(23830960-23831003)
chr8 (16-59)||(32062865-32062908)
chr8 (16-59)||(37410087-37410130)
chr8 (16-88)||(23838357-23838429)
chr8 (16-59)||(1197926-1197969)
chr8 (16-59)||(3459150-3459193)
chr8 (16-55)||(30439057-30439096)
chr8 (16-59)||(34947524-34947567)
chr8 (16-59)||(35617730-35617773)
chr8 (16-59)||(38111392-38111435)
chr8 (16-59)||(39922103-39922146)
chr8 (16-57)||(13797492-13797533)
chr8 (19-56)||(23085911-23085948)
chr8 (16-57)||(37426166-37426207)
chr8 (16-48)||(1276538-1276570)
chr8 (16-56)||(18308260-18308300)
chr8 (16-56)||(23960815-23960855)
[»] chr7 (36 HSPs)
chr7 (16-59)||(16492559-16492602)
chr7 (16-59)||(30991508-30991551)
chr7 (18-88)||(2526969-2527039)
chr7 (16-89)||(4680910-4680982)
chr7 (19-59)||(4681162-4681202)
chr7 (15-59)||(27716544-27716588)
chr7 (16-59)||(11646411-11646454)
chr7 (16-59)||(11650022-11650065)
chr7 (16-59)||(16671653-16671696)
chr7 (16-59)||(17646021-17646064)
chr7 (16-59)||(18486682-18486725)
chr7 (16-59)||(18487199-18487242)
chr7 (16-59)||(23591428-23591471)
chr7 (16-59)||(34837489-34837532)
chr7 (16-59)||(48640815-48640858)
chr7 (16-57)||(9141975-9142016)
chr7 (16-57)||(45419650-45419691)
chr7 (16-57)||(48641456-48641497)
chr7 (16-89)||(12140875-12140947)
chr7 (16-56)||(27716323-27716363)
chr7 (24-89)||(32278158-32278222)
chr7 (16-56)||(46264297-46264337)
chr7 (16-59)||(11645945-11645988)
chr7 (16-59)||(16671294-16671337)
chr7 (16-59)||(17645662-17645705)
chr7 (16-59)||(22773925-22773968)
chr7 (16-55)||(23591645-23591684)
chr7 (16-55)||(35124777-35124816)
chr7 (16-59)||(45419856-45419899)
chr7 (16-54)||(1566522-1566560)
chr7 (17-59)||(9142148-9142190)
chr7 (16-58)||(43059240-43059282)
chr7 (16-57)||(40450115-40450156)
chr7 (16-53)||(40686906-40686943)
chr7 (22-59)||(48641036-48641073)
chr7 (16-56)||(11646223-11646263)
[»] chr1 (26 HSPs)
chr1 (16-59)||(6537670-6537713)
chr1 (16-59)||(33375678-33375721)
chr1 (16-89)||(51113925-51113997)
chr1 (16-59)||(318603-318646)
chr1 (16-59)||(1156080-1156123)
chr1 (16-59)||(5428576-5428619)
chr1 (16-59)||(21617804-21617847)
chr1 (16-59)||(42497306-42497349)
chr1 (16-59)||(51114138-51114181)
chr1 (16-58)||(3227238-3227280)
chr1 (16-58)||(27296386-27296428)
chr1 (16-56)||(42492180-42492220)
chr1 (16-56)||(44262715-44262755)
chr1 (16-56)||(45417615-45417655)
chr1 (16-59)||(5429100-5429143)
chr1 (16-55)||(16165701-16165740)
chr1 (16-59)||(38684063-38684106)
chr1 (19-58)||(44099688-44099727)
chr1 (16-55)||(44263141-44263180)
chr1 (16-59)||(51113771-51113814)
chr1 (19-57)||(24595278-24595316)
chr1 (16-58)||(44263359-44263401)
chr1 (19-57)||(51272510-51272548)
chr1 (16-57)||(1647593-1647634)
chr1 (19-59)||(27296210-27296250)
chr1 (19-59)||(28950277-28950317)
[»] chr5 (22 HSPs)
chr5 (19-89)||(11313998-11314068)
chr5 (16-59)||(11313688-11313731)
chr5 (16-55)||(14166197-14166236)
chr5 (16-59)||(16528648-16528691)
chr5 (16-59)||(35159751-35159794)
chr5 (16-57)||(43394968-43395009)
chr5 (16-56)||(16526249-16526289)
chr5 (16-59)||(11313850-11313893)
chr5 (16-59)||(12442167-12442210)
chr5 (16-59)||(24350933-24350976)
chr5 (16-59)||(24351486-24351529)
chr5 (16-59)||(41092905-41092948)
chr5 (16-59)||(43395145-43395188)
chr5 (15-89)||(16528800-16528873)
chr5 (16-57)||(16529007-16529048)
chr5 (16-53)||(41093084-41093121)
chr5 (19-59)||(16305394-16305434)
chr5 (16-56)||(19121958-19121998)
chr5 (16-56)||(19122294-19122334)
chr5 (23-59)||(24326573-24326609)
chr5 (23-59)||(24350732-24350768)
chr5 (23-59)||(24351286-24351322)
[»] chr6 (12 HSPs)
chr6 (16-89)||(25068207-25068279)
chr6 (16-59)||(9828967-9829010)
chr6 (16-88)||(808849-808921)
chr6 (16-56)||(23622269-23622309)
chr6 (16-56)||(27579649-27579689)
chr6 (16-59)||(17201645-17201688)
chr6 (18-89)||(4811079-4811149)
chr6 (16-58)||(17202680-17202722)
chr6 (16-53)||(4100329-4100366)
chr6 (16-57)||(17906815-17906856)
chr6 (16-53)||(27315340-27315377)
chr6 (16-59)||(32208422-32208466)
[»] chr4 (25 HSPs)
chr4 (16-89)||(48076387-48076459)
chr4 (16-59)||(4941726-4941769)
chr4 (16-59)||(22292739-22292782)
chr4 (16-59)||(22292946-22292989)
chr4 (16-59)||(28379776-28379819)
chr4 (16-59)||(36639220-36639263)
chr4 (16-59)||(48076238-48076281)
chr4 (16-58)||(8118430-8118472)
chr4 (16-58)||(21581291-21581333)
chr4 (18-59)||(24049613-24049654)
chr4 (16-89)||(47768971-47769043)
chr4 (16-59)||(2177312-2177355)
chr4 (16-59)||(8118645-8118688)
chr4 (19-58)||(23952522-23952561)
chr4 (16-59)||(28389786-28389829)
chr4 (16-59)||(43161755-43161798)
chr4 (16-59)||(44500720-44500763)
chr4 (16-59)||(52689633-52689676)
chr4 (16-59)||(53144860-53144903)
chr4 (16-59)||(54653664-54653707)
chr4 (16-58)||(43161940-43161982)
chr4 (16-57)||(28379987-28380028)
chr4 (16-57)||(47631588-47631629)
chr4 (16-48)||(8079354-8079386)
chr4 (16-56)||(21585571-21585611)
[»] chr3 (25 HSPs)
chr3 (16-89)||(43017290-43017362)
chr3 (16-59)||(837218-837261)
chr3 (16-87)||(35560122-35560193)
chr3 (16-59)||(36643142-36643185)
chr3 (16-59)||(37760545-37760588)
chr3 (16-59)||(38887380-38887423)
chr3 (16-59)||(38887593-38887636)
chr3 (16-59)||(47503241-47503284)
chr3 (16-89)||(11454582-11454654)
chr3 (16-89)||(47503068-47503140)
chr3 (16-55)||(11453990-11454029)
chr3 (16-59)||(11454253-11454296)
chr3 (16-59)||(18094789-18094832)
chr3 (16-59)||(18095004-18095047)
chr3 (16-59)||(38887810-38887853)
chr3 (16-59)||(40050898-40050941)
chr3 (16-59)||(46451331-46451374)
chr3 (16-55)||(46451522-46451561)
chr3 (16-59)||(53047602-53047645)
chr3 (16-57)||(11454433-11454474)
chr3 (18-59)||(24365782-24365823)
chr3 (18-59)||(47519871-47519912)
chr3 (18-59)||(47519974-47520015)
chr3 (19-55)||(45514437-45514472)
chr3 (16-48)||(54274791-54274823)
[»] scaffold0013 (1 HSPs)
scaffold0013 (16-59)||(102751-102794)
[»] scaffold0018 (1 HSPs)
scaffold0018 (19-59)||(163820-163860)
[»] scaffold0294 (1 HSPs)
scaffold0294 (16-59)||(12400-12443)
[»] scaffold0504 (1 HSPs)
scaffold0504 (19-89)||(1551-1621)
[»] scaffold0240 (1 HSPs)
scaffold0240 (16-56)||(13302-13342)


Alignment Details
Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 160 - 279
Target Start/End: Complemental strand, 627483 - 627350
Alignment:
Q  160 gacgtcccaaacacaagttttaaaaaattactcttctcacttataaaattgttaatttccttttat-------------cattttttagcggcatttaac 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             ||||||||||||| |||||||    
T  627483 gacgtcccaaacacaagttttaaaaaattactcttctcacttataaaattgttaatttccttttatcatcatcttttgacattttttagcggtatttaac 627384  T
Q  247 tg-ccctaacacttttaagattggttgaaccgat 279  Q
    || |||||||| ||||||||||||||||| ||||    
T  627383 tgcccctaacaattttaagattggttgaatcgat 627350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 627643 - 627585
Alignment:
Q  1 gtaataaagtaaatgttgttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  627643 gtaataaagtaaatgttgttaggttaaataattgcaaatgtaataaagtaaatgagcgg 627585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 5001714 - 5001757
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    |||||||||||||||||||||||| |||||||| ||||||||||    
T  5001714 ttgttaggttaaataattgcaaacctaataaagcaaatgagcgg 5001757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 28612248 - 28612291
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    |||||||||||||||||||||||| |||||||| ||||||||||    
T  28612248 ttgttaggttaaataattgcaaacctaataaagcaaatgagcgg 28612291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 54
Target Start/End: Complemental strand, 627667 - 627629
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatg 54  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  627667 ttgttaggttaaataattgcaaacgtaataaagtaaatg 627629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 5001392 - 5001431
Alignment:
Q  19 ttaggttaaataattgcaaacataataaagtaaatgagcg 58  Q
    ||||||||||||||||||||| |||||||| |||||||||    
T  5001392 ttaggttaaataattgcaaacctaataaagcaaatgagcg 5001431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 5013062 - 5013101
Alignment:
Q  19 ttaggttaaataattgcaaacataataaagtaaatgagcg 58  Q
    ||||||||||||||||||||| |||||||| |||||||||    
T  5013062 ttaggttaaataattgcaaacctaataaagcaaatgagcg 5013101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 10129515 - 10129554
Alignment:
Q  19 ttaggttaaataattgcaaacataataaagtaaatgagcg 58  Q
    ||||||||||||||||||||| |||||||| |||||||||    
T  10129515 ttaggttaaataattgcaaacctaataaagcaaatgagcg 10129554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 12898114 - 12898071
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    ||||||| |||||||||||||||| ||| |||||||||||||||    
T  12898114 ttgttagattaaataattgcaaacctaacaaagtaaatgagcgg 12898071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 28611823 - 28611866
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    |||||||||||||||||||||||| |||| ||| ||||||||||    
T  28611823 ttgttaggttaaataattgcaaacctaatcaagcaaatgagcgg 28611866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 55
Target Start/End: Original strand, 41995768 - 41995807
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatga 55  Q
    |||||||||||||||||||||||| |||||||| ||||||    
T  41995768 ttgttaggttaaataattgcaaacctaataaagcaaatga 41995807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 28612039 - 28612077
Alignment:
Q  19 ttaggttaaataattgcaaacataataaagtaaatgagc 57  Q
    ||||||||||||||||||||| |||||||| ||||||||    
T  28612039 ttaggttaaataattgcaaacctaataaagaaaatgagc 28612077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 26632468 - 26632423
Alignment:
Q  182 aaaaattactcttctcacttataaaattgttaatttccttttatca 227  Q
    |||||||||||||||||||||| |||||||| ||| |||| |||||    
T  26632468 aaaaattactcttctcacttatgaaattgttcattcccttgtatca 26632423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 28612672 - 28612704
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaag 48  Q
    |||||||||||||||||||||||| ||||||||    
T  28612672 ttgttaggttaaataattgcaaacctaataaag 28612704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 29549879 - 29549839
Alignment:
Q  19 ttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    |||||||||||||||| |||| |||||||| ||||||||||    
T  29549879 ttaggttaaataattgtaaacctaataaagcaaatgagcgg 29549839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 41326457 - 41326417
Alignment:
Q  19 ttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    ||||||||||||||||||||| |||||||  ||||||||||    
T  41326457 ttaggttaaataattgcaaacttaataaaacaaatgagcgg 41326417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 44543733 - 44543773
Alignment:
Q  19 ttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    |||||||||||||||||||||  ||||||| ||||||||||    
T  44543733 ttaggttaaataattgcaaaccaaataaagcaaatgagcgg 44543773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 27853685 - 27853728
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    |||||||||||||||||||||||| |||||||||||||||||||    
T  27853685 ttgttaggttaaataattgcaaacctaataaagtaaatgagcgg 27853728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 37198131 - 37198201
Alignment:
Q  19 ttaggttaaataattgcaaacataataaagtaaatgagcggnnnnnnnnttaggttaaattgctgcagacg 89  Q
    ||||||||||||||||||||| |||||||| ||||||||||        ||||||||||||||||||||||    
T  37198131 ttaggttaaataattgcaaacctaataaagcaaatgagcggaaaaaaaattaggttaaattgctgcagacg 37198201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 23828142 - 23828185
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    |||||||||||||||||||||||| |||||||| ||||||||||    
T  23828142 ttgttaggttaaataattgcaaacctaataaagcaaatgagcgg 23828185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 23830960 - 23831003
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    |||||||||||||||||||||||| |||||||| ||||||||||    
T  23830960 ttgttaggttaaataattgcaaacctaataaagcaaatgagcgg 23831003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 32062908 - 32062865
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    |||||||||||||||||||||||| |||||||| ||||||||||    
T  32062908 ttgttaggttaaataattgcaaacctaataaagcaaatgagcgg 32062865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 37410087 - 37410130
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    |||||||||||||||||||||||| |||||||| ||||||||||    
T  37410087 ttgttaggttaaataattgcaaacctaataaagcaaatgagcgg 37410130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 23838357 - 23838429
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcggnnnnnnnnttaggttaaattgctgcagac 88  Q
    |||||||||||||||||||||||  |||||||| ||||||||||        | |||||||||||||||||||    
T  23838357 ttgttaggttaaataattgcaaaactaataaagcaaatgagcgggaaaaaattaaggttaaattgctgcagac 23838429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 1197969 - 1197926
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    |||||||||||||||||||||| | |||||||| ||||||||||    
T  1197969 ttgttaggttaaataattgcaaccctaataaagcaaatgagcgg 1197926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 3459150 - 3459193
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    ||||||| |||||||||||||||| |||||||| ||||||||||    
T  3459150 ttgttagattaaataattgcaaacctaataaagcaaatgagcgg 3459193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 55
Target Start/End: Original strand, 30439057 - 30439096
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatga 55  Q
    |||||||||||||||||||||||| |||||||| ||||||    
T  30439057 ttgttaggttaaataattgcaaacctaataaagcaaatga 30439096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 34947567 - 34947524
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    |||||||||||||||||| ||||| |||||||| ||||||||||    
T  34947567 ttgttaggttaaataatttcaaacctaataaagcaaatgagcgg 34947524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 35617773 - 35617730
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    |||||||||||||||||||||||| |||||||  ||||||||||    
T  35617773 ttgttaggttaaataattgcaaacctaataaaacaaatgagcgg 35617730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 38111435 - 38111392
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    ||||| |||||||||||||||||| |||||||| ||||||||||    
T  38111435 ttgttgggttaaataattgcaaacctaataaagcaaatgagcgg 38111392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 39922103 - 39922146
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    |||||||||||||||||||||||| |||||||  ||||||||||    
T  39922103 ttgttaggttaaataattgcaaacctaataaaacaaatgagcgg 39922146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 13797533 - 13797492
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagc 57  Q
    |||||| ||||||||||||||||| |||||||| ||||||||    
T  13797533 ttgttaagttaaataattgcaaacctaataaagcaaatgagc 13797492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 23085948 - 23085911
Alignment:
Q  19 ttaggttaaataattgcaaacataataaagtaaatgag 56  Q
    ||||||||||||||||||||| |||||||| |||||||    
T  23085948 ttaggttaaataattgcaaacctaataaagcaaatgag 23085911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 37426207 - 37426166
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagc 57  Q
    |||||| |||||| |||||||||| |||||||||||||||||    
T  37426207 ttgttatgttaaacaattgcaaacctaataaagtaaatgagc 37426166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 1276538 - 1276570
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaag 48  Q
    |||||||||||||||||||||||| ||||||||    
T  1276538 ttgttaggttaaataattgcaaacctaataaag 1276570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 18308260 - 18308300
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgag 56  Q
    |||||||||||||||||||| ||| |||||||| |||||||    
T  18308260 ttgttaggttaaataattgcgaacctaataaagcaaatgag 18308300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 23960815 - 23960855
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgag 56  Q
    |||||||||||||||||| ||||| |||||||| |||||||    
T  23960815 ttgttaggttaaataattacaaacctaataaagcaaatgag 23960855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 36)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 16492559 - 16492602
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    ||||||||||||||||||||||||||||||||| ||||||||||    
T  16492559 ttgttaggttaaataattgcaaacataataaagcaaatgagcgg 16492602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 30991551 - 30991508
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    ||||||||||||||||||||||||||||||||| ||||||||||    
T  30991551 ttgttaggttaaataattgcaaacataataaagcaaatgagcgg 30991508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 2526969 - 2527039
Alignment:
Q  18 gttaggttaaataattgcaaacataataaagtaaatgagcggnnnnnnnnttaggttaaattgctgcagac 88  Q
    |||||||||||||||||||||| |||||||| ||||||||||        |||||||||||||||||||||    
T  2526969 gttaggttaaataattgcaaacctaataaagcaaatgagcgggaaaaaaattaggttaaattgctgcagac 2527039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 4680910 - 4680982
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcggnnnnnnnnttaggttaaattgctgcagacg 89  Q
    |||||||||||||||||||||||| |||||||| ||||||||||        ||||||||||||||||||||||    
T  4680910 ttgttaggttaaataattgcaaacctaataaagcaaatgagcgg-gaaaaaattaggttaaattgctgcagacg 4680982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 4681162 - 4681202
Alignment:
Q  19 ttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  4681162 ttaggttaaataattgcaaacataataaagcaaatgagcgg 4681202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 27716544 - 27716588
Alignment:
Q  15 gttgttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||    
T  27716544 gttgttaggttaaataattgcaaacctaataaagcaaatgagcgg 27716588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 11646411 - 11646454
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    |||||||||||||||||||||||| |||||||| ||||||||||    
T  11646411 ttgttaggttaaataattgcaaacctaataaagcaaatgagcgg 11646454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 11650022 - 11650065
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    |||||||||||||||||||||||| |||||||| ||||||||||    
T  11650022 ttgttaggttaaataattgcaaacctaataaagcaaatgagcgg 11650065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 16671696 - 16671653
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    |||||||||||||||||||||||| |||||||| ||||||||||    
T  16671696 ttgttaggttaaataattgcaaacctaataaagcaaatgagcgg 16671653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 17646064 - 17646021
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    |||||||||||||||||||||||| |||||||| ||||||||||    
T  17646064 ttgttaggttaaataattgcaaacctaataaagcaaatgagcgg 17646021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 18486725 - 18486682
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    |||||||||||||||||||||||| |||||||| ||||||||||    
T  18486725 ttgttaggttaaataattgcaaacctaataaagcaaatgagcgg 18486682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 18487242 - 18487199
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    |||||||||||||||||||||||| |||||||| ||||||||||    
T  18487242 ttgttaggttaaataattgcaaacctaataaagcaaatgagcgg 18487199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 23591428 - 23591471
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    |||||||||||||||||||||||| |||||||| ||||||||||    
T  23591428 ttgttaggttaaataattgcaaacctaataaagcaaatgagcgg 23591471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 34837532 - 34837489
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    ||||||||| |||||||||||||| |||||||||||||||||||    
T  34837532 ttgttaggtaaaataattgcaaacctaataaagtaaatgagcgg 34837489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 48640815 - 48640858
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    |||||||||||||||||||||||| |||||||| ||||||||||    
T  48640815 ttgttaggttaaataattgcaaacctaataaagcaaatgagcgg 48640858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 57
Target Start/End: Original strand, 9141975 - 9142016
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagc 57  Q
    |||||||||||||||||||||||| |||||||| ||||||||    
T  9141975 ttgttaggttaaataattgcaaacctaataaagcaaatgagc 9142016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 57
Target Start/End: Original strand, 45419650 - 45419691
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagc 57  Q
    |||||||||||||||||||||||| |||||||| ||||||||    
T  45419650 ttgttaggttaaataattgcaaacctaataaagcaaatgagc 45419691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 57
Target Start/End: Original strand, 48641456 - 48641497
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagc 57  Q
    |||||||||||||||||||||||| |||||||| ||||||||    
T  48641456 ttgttaggttaaataattgcaaacttaataaagcaaatgagc 48641497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 12140875 - 12140947
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcggnnnnnnnnttaggttaaattgctgcagacg 89  Q
    |||||||||||||||||||||||| |||||| | ||||||||||        ||||||||||||||||||||||    
T  12140875 ttgttaggttaaataattgcaaacctaataacgcaaatgagcgg-aaaaaaattaggttaaattgctgcagacg 12140947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 27716323 - 27716363
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgag 56  Q
    |||||||||||||||||||||||| |||||||| |||||||    
T  27716323 ttgttaggttaaataattgcaaacctaataaagcaaatgag 27716363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 32278158 - 32278222
Alignment:
Q  24 ttaaataattgcaaacataataaagtaaatgagcggnnnnnnnnttaggttaaattgctgcagacg 89  Q
    |||||||||||||||| |||||||||||||||||||        ||||||||||||||||||||||    
T  32278158 ttaaataattgcaaacctaataaagtaaatgagcgg-gaaaaaattaggttaaattgctgcagacg 32278222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 46264297 - 46264337
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgag 56  Q
    |||||||||||||||||||||||| |||||||| |||||||    
T  46264297 ttgttaggttaaataattgcaaacctaataaagcaaatgag 46264337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 11645945 - 11645988
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    |||||||||||||||||| ||||| |||||||| ||||||||||    
T  11645945 ttgttaggttaaataattacaaacctaataaagcaaatgagcgg 11645988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 16671337 - 16671294
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    |||||||||||||||||||||||| ||||| || ||||||||||    
T  16671337 ttgttaggttaaataattgcaaacctaatagagcaaatgagcgg 16671294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 17645705 - 17645662
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    |||||||||||||||||||||||| ||||| || ||||||||||    
T  17645705 ttgttaggttaaataattgcaaacctaatagagcaaatgagcgg 17645662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 22773925 - 22773968
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    ||||||| ||||||||||||||||||| ||||| ||||||||||    
T  22773925 ttgttagattaaataattgcaaacatagtaaagcaaatgagcgg 22773968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 55
Target Start/End: Original strand, 23591645 - 23591684
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatga 55  Q
    |||||||||||||||||||||||| |||||||| ||||||    
T  23591645 ttgttaggttaaataattgcaaacctaataaagcaaatga 23591684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 55
Target Start/End: Complemental strand, 35124816 - 35124777
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatga 55  Q
    |||||||||||||||||||||||| |||||||| ||||||    
T  35124816 ttgttaggttaaataattgcaaacctaataaagcaaatga 35124777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 45419856 - 45419899
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    |||||||||||||||||| ||||| |||||||| ||||||||||    
T  45419856 ttgttaggttaaataattacaaacctaataaagcaaatgagcgg 45419899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 1566522 - 1566560
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatg 54  Q
    |||||||||||||||||||||||| |||||||| |||||    
T  1566522 ttgttaggttaaataattgcaaacctaataaagcaaatg 1566560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 9142148 - 9142190
Alignment:
Q  17 tgttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    |||||||||||||||||||||||  ||||||| ||||||||||    
T  9142148 tgttaggttaaataattgcaaaccaaataaagcaaatgagcgg 9142190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 43059282 - 43059240
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcg 58  Q
    ||||||| |||||||||||||||| |||||||| |||||||||    
T  43059282 ttgttagattaaataattgcaaacctaataaagcaaatgagcg 43059240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 57
Target Start/End: Original strand, 40450115 - 40450156
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagc 57  Q
    |||||||||||||||||||||||  |||||||| ||||||||    
T  40450115 ttgttaggttaaataattgcaaatctaataaagcaaatgagc 40450156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 40686906 - 40686943
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaat 53  Q
    |||||||||||||||||||||||| |||||||| ||||    
T  40686906 ttgttaggttaaataattgcaaacctaataaagcaaat 40686943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 59
Target Start/End: Original strand, 48641036 - 48641073
Alignment:
Q  22 ggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    |||||||||||||||||| |||||||| ||||||||||    
T  48641036 ggttaaataattgcaaacctaataaagcaaatgagcgg 48641073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 11646223 - 11646263
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgag 56  Q
    |||||||||||||||||||||||| ||| |||| |||||||    
T  11646223 ttgttaggttaaataattgcaaacctaacaaagcaaatgag 11646263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 6537670 - 6537713
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    |||||||||||||||||||||||| |||||||||||||||||||    
T  6537670 ttgttaggttaaataattgcaaacctaataaagtaaatgagcgg 6537713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 33375721 - 33375678
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    |||||||||||||||||||||||| |||||||||||||||||||    
T  33375721 ttgttaggttaaataattgcaaacctaataaagtaaatgagcgg 33375678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 51113997 - 51113925
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcggnnnnnnnnttaggttaaattgctgcagacg 89  Q
    |||||||||||||||||||||||| ||||||||||||||| |||        ||||||||||||||||||||||    
T  51113997 ttgttaggttaaataattgcaaacctaataaagtaaatgaacgg-gaaaaaattaggttaaattgctgcagacg 51113925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 318646 - 318603
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    |||||||||||||||||||||||| |||||||| ||||||||||    
T  318646 ttgttaggttaaataattgcaaacctaataaagcaaatgagcgg 318603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 1156080 - 1156123
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    |||||||||||||||||||||||| |||||||| ||||||||||    
T  1156080 ttgttaggttaaataattgcaaacctaataaagcaaatgagcgg 1156123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 5428619 - 5428576
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    |||||||||||||||||||||||| |||||||| ||||||||||    
T  5428619 ttgttaggttaaataattgcaaacctaataaagcaaatgagcgg 5428576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 21617847 - 21617804
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    |||||||||||||||||||||||| |||||||| ||||||||||    
T  21617847 ttgttaggttaaataattgcaaacctaataaagcaaatgagcgg 21617804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 42497306 - 42497349
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    |||||||||||||||||||||||| |||||||| ||||||||||    
T  42497306 ttgttaggttaaataattgcaaacctaataaagcaaatgagcgg 42497349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 51114181 - 51114138
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    |||||||||||||||||||||||| |||||||| ||||||||||    
T  51114181 ttgttaggttaaataattgcaaacctaataaagcaaatgagcgg 51114138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 3227238 - 3227280
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcg 58  Q
    |||||||||||||||||||||||| |||||||| |||||||||    
T  3227238 ttgttaggttaaataattgcaaacctaataaagcaaatgagcg 3227280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 27296428 - 27296386
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcg 58  Q
    |||||||||||||||||||||||| |||||||| |||||||||    
T  27296428 ttgttaggttaaataattgcaaacctaataaagaaaatgagcg 27296386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 42492180 - 42492220
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgag 56  Q
    |||||||||||||||||||||||| |||||||| |||||||    
T  42492180 ttgttaggttaaataattgcaaacctaataaagcaaatgag 42492220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 44262755 - 44262715
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgag 56  Q
    |||||||||||||||||||||||| |||||||| |||||||    
T  44262755 ttgttaggttaaataattgcaaacgtaataaagcaaatgag 44262715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 45417615 - 45417655
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgag 56  Q
    |||||||||||||||||||||||| |||||||| |||||||    
T  45417615 ttgttaggttaaataattgcaaacctaataaagcaaatgag 45417655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 5429143 - 5429100
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    |||||||||||||||||||||||| |||||||| || |||||||    
T  5429143 ttgttaggttaaataattgcaaacctaataaagcaattgagcgg 5429100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 55
Target Start/End: Original strand, 16165701 - 16165740
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatga 55  Q
    |||||||||||||||||||||||| |||||||| ||||||    
T  16165701 ttgttaggttaaataattgcaaacctaataaagcaaatga 16165740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 38684106 - 38684063
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    ||||||||||||||||| |||||| |||||||| ||||||||||    
T  38684106 ttgttaggttaaataatcgcaaacctaataaagcaaatgagcgg 38684063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 44099688 - 44099727
Alignment:
Q  19 ttaggttaaataattgcaaacataataaagtaaatgagcg 58  Q
    ||||||||||||||||||||| |||||||| |||||||||    
T  44099688 ttaggttaaataattgcaaacctaataaagcaaatgagcg 44099727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 55
Target Start/End: Complemental strand, 44263180 - 44263141
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatga 55  Q
    |||||||||||||||||||||||| |||||||| ||||||    
T  44263180 ttgttaggttaaataattgcaaacctaataaagcaaatga 44263141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 51113814 - 51113771
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    |||||||||||||||||||||||  |||||||| ||||||||||    
T  51113814 ttgttaggttaaataattgcaaatctaataaagcaaatgagcgg 51113771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 24595316 - 24595278
Alignment:
Q  19 ttaggttaaataattgcaaacataataaagtaaatgagc 57  Q
    ||||||||||||||||||||| |||||||| ||||||||    
T  24595316 ttaggttaaataattgcaaacctaataaagcaaatgagc 24595278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 44263401 - 44263359
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcg 58  Q
    |||||||||||||||||||||||| |||||| | |||||||||    
T  44263401 ttgttaggttaaataattgcaaacctaataaggcaaatgagcg 44263359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 51272510 - 51272548
Alignment:
Q  19 ttaggttaaataattgcaaacataataaagtaaatgagc 57  Q
    ||||||||||||||||||||| |||||||| ||||||||    
T  51272510 ttaggttaaataattgcaaacctaataaagcaaatgagc 51272548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 1647634 - 1647593
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagc 57  Q
    |||||||||||||||||| ||||| |||||||| ||||||||    
T  1647634 ttgttaggttaaataattccaaacctaataaagcaaatgagc 1647593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 27296250 - 27296210
Alignment:
Q  19 ttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    ||||||||||||||||||||| |||||||| |||| |||||    
T  27296250 ttaggttaaataattgcaaacctaataaagcaaataagcgg 27296210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 28950277 - 28950317
Alignment:
Q  19 ttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    ||||||||||||||||||||| |||||||| |||| |||||    
T  28950277 ttaggttaaataattgcaaacctaataaagcaaattagcgg 28950317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 11314068 - 11313998
Alignment:
Q  19 ttaggttaaataattgcaaacataataaagtaaatgagcggnnnnnnnnttaggttaaattgctgcagacg 89  Q
    ||||||||||||||||||||| |||||||| ||||||||||        ||||||||||||||||||||||    
T  11314068 ttaggttaaataattgcaaacctaataaagcaaatgagcggaaaaaaaattaggttaaattgctgcagacg 11313998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 11313731 - 11313688
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    |||||||||||||||||||||||| |||||||| ||||||||||    
T  11313731 ttgttaggttaaataattgcaaacctaataaagaaaatgagcgg 11313688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 55
Target Start/End: Original strand, 14166197 - 14166236
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatga 55  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  14166197 ttgttaggttaaataattgcaaacataataaagcaaatga 14166236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 16528691 - 16528648
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    |||||||||||||||||||||||| |||||||| ||||||||||    
T  16528691 ttgttaggttaaataattgcaaacctaataaagcaaatgagcgg 16528648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 35159794 - 35159751
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    |||||||||||||||||||||||| |||||||| ||||||||||    
T  35159794 ttgttaggttaaataattgcaaacctaataaagcaaatgagcgg 35159751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 57
Target Start/End: Original strand, 43394968 - 43395009
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagc 57  Q
    |||||||||||||||||||||||| |||||||| ||||||||    
T  43394968 ttgttaggttaaataattgcaaacctaataaagcaaatgagc 43395009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 16526289 - 16526249
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgag 56  Q
    |||||||||||||||||||||||| |||||||| |||||||    
T  16526289 ttgttaggttaaataattgcaaacctaataaagcaaatgag 16526249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 11313893 - 11313850
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    |||||||||||||||||||||||| |||||||| ||||| ||||    
T  11313893 ttgttaggttaaataattgcaaacctaataaagaaaatgtgcgg 11313850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 12442167 - 12442210
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    |||||||||||||||||||||||| |||||| | ||||||||||    
T  12442167 ttgttaggttaaataattgcaaacctaataaggcaaatgagcgg 12442210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 24350933 - 24350976
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    |||||||||||||||||||||||| |||||||  ||||||||||    
T  24350933 ttgttaggttaaataattgcaaacctaataaaacaaatgagcgg 24350976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 24351486 - 24351529
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    |||||||||||||||||||||||| |||||||  ||||||||||    
T  24351486 ttgttaggttaaataattgcaaacctaataaaacaaatgagcgg 24351529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 41092905 - 41092948
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    |||||||||||||||||||||||| |||||||| ||| ||||||    
T  41092905 ttgttaggttaaataattgcaaacctaataaagcaaaagagcgg 41092948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 43395145 - 43395188
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    ||||||||||||||||||| |||| |||||||| ||||||||||    
T  43395145 ttgttaggttaaataattggaaacctaataaagcaaatgagcgg 43395188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 89
Target Start/End: Complemental strand, 16528873 - 16528800
Alignment:
Q  15 gttgttaggttaaataattgcaaacataataaagtaaatgagcggnnnnnnnnttaggttaaattgctgcagacg 89  Q
    |||||||||||||||| |||||||| |||||| | ||||||||||        ||||||||||||||||||||||    
T  16528873 gttgttaggttaaatatttgcaaacctaataaggcaaatgagcgg-gaaaaaattaggttaaattgctgcagacg 16528800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 16529048 - 16529007
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagc 57  Q
    |||||||||||||||||||||||| |||||| | ||||||||    
T  16529048 ttgttaggttaaataattgcaaacctaataaggcaaatgagc 16529007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 41093084 - 41093121
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaat 53  Q
    |||||||||||||||||||||||| |||||||| ||||    
T  41093084 ttgttaggttaaataattgcaaacctaataaagcaaat 41093121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 16305434 - 16305394
Alignment:
Q  19 ttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    |||| |||||||||||||||| |||||||| ||||||||||    
T  16305434 ttagattaaataattgcaaacctaataaagcaaatgagcgg 16305394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 19121998 - 19121958
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgag 56  Q
    ||||||||||||| |||||||||| |||||||| |||||||    
T  19121998 ttgttaggttaaacaattgcaaacctaataaagcaaatgag 19121958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 19122334 - 19122294
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgag 56  Q
    ||||||||||||| |||||||||| |||||||| |||||||    
T  19122334 ttgttaggttaaacaattgcaaacctaataaagcaaatgag 19122294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 24326609 - 24326573
Alignment:
Q  23 gttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    ||||||||||||||||| |||||||| ||||||||||    
T  24326609 gttaaataattgcaaacctaataaagcaaatgagcgg 24326573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 59
Target Start/End: Original strand, 24350732 - 24350768
Alignment:
Q  23 gttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    ||||||||||||||||| |||||||| ||||||||||    
T  24350732 gttaaataattgcaaacctaataaagcaaatgagcgg 24350768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 59
Target Start/End: Original strand, 24351286 - 24351322
Alignment:
Q  23 gttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    ||||||||||||||||| |||||||| ||||||||||    
T  24351286 gttaaataattgcaaacctaataaagcaaatgagcgg 24351322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 25068279 - 25068207
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcggnnnnnnnnttaggttaaattgctgcagacg 89  Q
    |||||||||||||||||||||||| |||||||| ||||||||||        ||||||||||||||||||||||    
T  25068279 ttgttaggttaaataattgcaaacctaataaagcaaatgagcgg-aaaaaaattaggttaaattgctgcagacg 25068207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 9829010 - 9828967
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    |||||||||||||||||||||||| |||||||| ||||||||||    
T  9829010 ttgttaggttaaataattgcaaacctaataaagcaaatgagcgg 9828967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 808921 - 808849
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcggnnnnnnnnttaggttaaattgctgcagac 88  Q
    ||||| |||||||||||||||||| |||||||| ||||||| ||        |||||||||||||||||||||    
T  808921 ttgtttggttaaataattgcaaacctaataaagcaaatgagtgggaaaaaaattaggttaaattgctgcagac 808849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 23622309 - 23622269
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgag 56  Q
    |||||||||||||||||||||||| |||||||| |||||||    
T  23622309 ttgttaggttaaataattgcaaacctaataaagcaaatgag 23622269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 27579689 - 27579649
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgag 56  Q
    |||||||||||||||||||||||| |||||||| |||||||    
T  27579689 ttgttaggttaaataattgcaaacctaataaagcaaatgag 27579649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 17201688 - 17201645
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    |||||||||||||||||||||||| |||||||  ||||||||||    
T  17201688 ttgttaggttaaataattgcaaacctaataaaacaaatgagcgg 17201645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 4811079 - 4811149
Alignment:
Q  18 gttaggttaaataattgcaaacataataaagtaaatgagcggnnnnnnnnttaggttaaattgctgcagacg 89  Q
    |||||||||||||||||||||| |||||||| ||| ||||||        ||||||||||||||||||||||    
T  4811079 gttaggttaaataattgcaaacctaataaagcaaacgagcgg-gaaaaaattaggttaaattgctgcagacg 4811149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 17202722 - 17202680
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcg 58  Q
    ||||||| |||||||||||||||| |||||||| |||||||||    
T  17202722 ttgttagattaaataattgcaaacctaataaagcaaatgagcg 17202680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 4100329 - 4100366
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaat 53  Q
    ||||||| ||||||||||||||||||||||||| ||||    
T  4100329 ttgttagcttaaataattgcaaacataataaagcaaat 4100366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 57
Target Start/End: Original strand, 17906815 - 17906856
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagc 57  Q
    |||||||||||||||||| ||||| |||||||| ||||||||    
T  17906815 ttgttaggttaaataattacaaacctaataaagcaaatgagc 17906856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 27315377 - 27315340
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaat 53  Q
    |||||||||||||||||||||||| |||||||| ||||    
T  27315377 ttgttaggttaaataattgcaaacctaataaagcaaat 27315340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 32208422 - 32208466
Alignment:
Q  16 ttgttaggttaaa-taattgcaaacataataaagtaaatgagcgg 59  Q
    ||||||||||||| ||||||||||| |||||||| ||||||||||    
T  32208422 ttgttaggttaaaataattgcaaacctaataaagcaaatgagcgg 32208466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 48076459 - 48076387
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcggnnnnnnnnttaggttaaattgctgcagacg 89  Q
    |||||||||||||||||||||||| |||||||| ||||||||||        ||||||||||||||||||||||    
T  48076459 ttgttaggttaaataattgcaaacctaataaagcaaatgagcgg-ggaaaaattaggttaaattgctgcagacg 48076387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 4941769 - 4941726
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    |||||||||||||||||||||||| |||||||| ||||||||||    
T  4941769 ttgttaggttaaataattgcaaacctaataaagcaaatgagcgg 4941726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 22292782 - 22292739
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    |||||||||||||||||||||||| |||||||| ||||||||||    
T  22292782 ttgttaggttaaataattgcaaacctaataaagcaaatgagcgg 22292739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 22292989 - 22292946
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    |||||||||||||||||||||||| |||||||| ||||||||||    
T  22292989 ttgttaggttaaataattgcaaacctaataaagcaaatgagcgg 22292946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 28379776 - 28379819
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    |||||||||||||||||||||||| |||||||| ||||||||||    
T  28379776 ttgttaggttaaataattgcaaacctaataaagcaaatgagcgg 28379819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 36639263 - 36639220
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    |||||||||||||||||||||||| |||||||| ||||||||||    
T  36639263 ttgttaggttaaataattgcaaacctaataaagcaaatgagcgg 36639220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 48076281 - 48076238
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    |||||||||||||||||||||||| |||||||| ||||||||||    
T  48076281 ttgttaggttaaataattgcaaacctaataaagcaaatgagcgg 48076238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 8118472 - 8118430
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcg 58  Q
    |||||||||||||||||||||||| |||||||| |||||||||    
T  8118472 ttgttaggttaaataattgcaaacctaataaagcaaatgagcg 8118430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 21581291 - 21581333
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcg 58  Q
    |||||||||||||||||||||||| |||||||| |||||||||    
T  21581291 ttgttaggttaaataattgcaaacctaataaagcaaatgagcg 21581333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 24049654 - 24049613
Alignment:
Q  18 gttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    |||||||||||||||||||||| |||||||| ||||||||||    
T  24049654 gttaggttaaataattgcaaacctaataaagcaaatgagcgg 24049613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 47769043 - 47768971
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcggnnnnnnnnttaggttaaattgctgcagacg 89  Q
    |||||||||||||||||||||||| |||| ||| ||||||||||        ||||||||||||||||||||||    
T  47769043 ttgttaggttaaataattgcaaacctaatgaagcaaatgagcgg-aaaaaaattaggttaaattgctgcagacg 47768971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 2177355 - 2177312
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    |||||||||||| ||||||||||| |||||||| ||||||||||    
T  2177355 ttgttaggttaagtaattgcaaacctaataaagcaaatgagcgg 2177312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 8118688 - 8118645
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    |||||||||||||||||||||| | |||||||| ||||||||||    
T  8118688 ttgttaggttaaataattgcaaccctaataaagcaaatgagcgg 8118645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 23952522 - 23952561
Alignment:
Q  19 ttaggttaaataattgcaaacataataaagtaaatgagcg 58  Q
    ||||||||||||||||||||| |||||||| |||||||||    
T  23952522 ttaggttaaataattgcaaacctaataaagcaaatgagcg 23952561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 28389786 - 28389829
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    |||||||||||||||| ||||||| |||||||| ||||||||||    
T  28389786 ttgttaggttaaataaatgcaaacctaataaagcaaatgagcgg 28389829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 43161755 - 43161798
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    |||||||||||||||||||||||| |||||| | ||||||||||    
T  43161755 ttgttaggttaaataattgcaaacctaataatgcaaatgagcgg 43161798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 44500763 - 44500720
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    |||||| ||||||||||||||||| |||||||| ||||||||||    
T  44500763 ttgttacgttaaataattgcaaacctaataaagcaaatgagcgg 44500720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 52689633 - 52689676
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    |||||||||||||||||| ||||| |||||||| ||||||||||    
T  52689633 ttgttaggttaaataattacaaacctaataaagcaaatgagcgg 52689676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 53144860 - 53144903
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    |||||||||||||||||| ||||| |||||||| ||||||||||    
T  53144860 ttgttaggttaaataattacaaacctaataaagcaaatgagcgg 53144903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 54653664 - 54653707
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    |||||||||||||||| ||||||| |||||||| ||||||||||    
T  54653664 ttgttaggttaaataactgcaaacctaataaagcaaatgagcgg 54653707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 43161940 - 43161982
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcg 58  Q
    |||||| ||||||||||||||||| |||||||| |||||||||    
T  43161940 ttgttaagttaaataattgcaaacctaataaagcaaatgagcg 43161982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 57
Target Start/End: Original strand, 28379987 - 28380028
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagc 57  Q
    |||||||||||||||||||||||| |||||||  ||||||||    
T  28379987 ttgttaggttaaataattgcaaacctaataaaacaaatgagc 28380028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 47631629 - 47631588
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagc 57  Q
    |||||||||||||||||||||||| |||||||| ||| ||||    
T  47631629 ttgttaggttaaataattgcaaacctaataaagcaaaagagc 47631588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 8079386 - 8079354
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaag 48  Q
    |||||||||||||||||||||||| ||||||||    
T  8079386 ttgttaggttaaataattgcaaacctaataaag 8079354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 21585571 - 21585611
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgag 56  Q
    |||||| ||||||||||||||||| |||||||| |||||||    
T  21585571 ttgttaagttaaataattgcaaacctaataaagcaaatgag 21585611  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 43017362 - 43017290
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcggnnnnnnnnttaggttaaattgctgcagacg 89  Q
    |||||||||||||||||||||||| |||||||| ||||||||||        ||||||||||||||||||||||    
T  43017362 ttgttaggttaaataattgcaaacttaataaagcaaatgagcgg-gaaaaaattaggttaaattgctgcagacg 43017290  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 837218 - 837261
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    |||||||||||||||||||||||| |||||||| ||||||||||    
T  837218 ttgttaggttaaataattgcaaacctaataaagcaaatgagcgg 837261  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 35560193 - 35560122
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcggnnnnnnnnttaggttaaattgctgcaga 87  Q
    |||||||||||||||||||||||| |||||||| ||||||| ||        ||||||||||||||||||||    
T  35560193 ttgttaggttaaataattgcaaacctaataaagcaaatgagaggaaaaaaaattaggttaaattgctgcaga 35560122  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 36643142 - 36643185
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    |||||||||||||||||||||||| |||||||| ||||||||||    
T  36643142 ttgttaggttaaataattgcaaacctaataaagcaaatgagcgg 36643185  T

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Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 37760588 - 37760545
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    |||||||||||||||||||||||| |||||||| ||||||||||    
T  37760588 ttgttaggttaaataattgcaaacctaataaagcaaatgagcgg 37760545  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 38887380 - 38887423
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    |||||||||||||||||||||||| |||||||| ||||||||||    
T  38887380 ttgttaggttaaataattgcaaacctaataaagcaaatgagcgg 38887423  T

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Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 38887593 - 38887636
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    |||||||||||||||||||||||| |||||||| ||||||||||    
T  38887593 ttgttaggttaaataattgcaaacctaataaagcaaatgagcgg 38887636  T

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Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 47503241 - 47503284
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    |||||||||||||||||||||||| |||||||| ||||||||||    
T  47503241 ttgttaggttaaataattgcaaacctaataaagcaaatgagcgg 47503284  T

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Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 11454654 - 11454582
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcggnnnnnnnnttaggttaaattgctgcagacg 89  Q
    |||||||||||||| ||||||||| |||||||| ||||||||||        ||||||||||||||||||||||    
T  11454654 ttgttaggttaaatgattgcaaacctaataaagcaaatgagcgg-gaaaaaattaggttaaattgctgcagacg 11454582  T

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Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 47503068 - 47503140
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcggnnnnnnnnttaggttaaattgctgcagacg 89  Q
    |||||||||||||||||||||||| |||||| | ||||||||||        ||||||||||||||||||||||    
T  47503068 ttgttaggttaaataattgcaaacctaataatgcaaatgagcgg-gaaaaaattaggttaaattgctgcagacg 47503140  T

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Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 55
Target Start/End: Complemental strand, 11454029 - 11453990
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatga 55  Q
    |||||||||||||||||||||||| |||||||| ||||||    
T  11454029 ttgttaggttaaataattgcaaacctaataaagcaaatga 11453990  T

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Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 11454296 - 11454253
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    ||||||||||||||||||||||||  ||||||||| ||||||||    
T  11454296 ttgttaggttaaataattgcaaaccaaataaagtagatgagcgg 11454253  T

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Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 18094832 - 18094789
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    |||||||||||||||||||||||| |||||||| |||| |||||    
T  18094832 ttgttaggttaaataattgcaaacctaataaagcaaattagcgg 18094789  T

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Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 18095047 - 18095004
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    |||||||||||||| ||||||||| |||||||| ||||||||||    
T  18095047 ttgttaggttaaatcattgcaaacctaataaagcaaatgagcgg 18095004  T

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Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 38887810 - 38887853
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    |||||| ||||||||||||||||| |||||||| ||||||||||    
T  38887810 ttgttacgttaaataattgcaaacctaataaagcaaatgagcgg 38887853  T

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Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 40050941 - 40050898
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    |||||||||||||| ||||||||| |||||||| ||||||||||    
T  40050941 ttgttaggttaaattattgcaaacctaataaagcaaatgagcgg 40050898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 46451374 - 46451331
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    |||||||||||||||||||||||  |||||||| ||||||||||    
T  46451374 ttgttaggttaaataattgcaaatctaataaagcaaatgagcgg 46451331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 55
Target Start/End: Complemental strand, 46451561 - 46451522
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatga 55  Q
    |||||||||||||||||||||||| |||||||| ||||||    
T  46451561 ttgttaggttaaataattgcaaacctaataaagcaaatga 46451522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 53047602 - 53047645
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    |||||||||||||||||||||||| ||| |||| ||||||||||    
T  53047602 ttgttaggttaaataattgcaaacctaacaaagcaaatgagcgg 53047645  T

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Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 11454474 - 11454433
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagc 57  Q
    |||||||||||||||||||||| | |||||||| ||||||||    
T  11454474 ttgttaggttaaataattgcaagcctaataaagcaaatgagc 11454433  T

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Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 24365823 - 24365782
Alignment:
Q  18 gttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    |||||||||||||||||||||| |||||||  ||||||||||    
T  24365823 gttaggttaaataattgcaaacctaataaatcaaatgagcgg 24365782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 47519871 - 47519912
Alignment:
Q  18 gttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    |||||||||||||||| ||||| |||||||| ||||||||||    
T  47519871 gttaggttaaataattacaaacttaataaagcaaatgagcgg 47519912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 47520015 - 47519974
Alignment:
Q  18 gttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    |||||||||||||||||||| | |||||||| ||||||||||    
T  47520015 gttaggttaaataattgcaaccctaataaagcaaatgagcgg 47519974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 45514437 - 45514472
Alignment:
Q  19 ttaggttaaataattgcaaacataataaagtaaatga 55  Q
    ||||||||||||||||||||| |||||||||||||||    
T  45514437 ttaggttaaataattgcaaac-taataaagtaaatga 45514472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 54274823 - 54274791
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaag 48  Q
    |||||||||||||||||||||||| ||||||||    
T  54274823 ttgttaggttaaataattgcaaacctaataaag 54274791  T

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Target: scaffold0013 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 102794 - 102751
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    |||||||||||||||||||||||| |||||||| ||||||||||    
T  102794 ttgttaggttaaataattgcaaacttaataaagcaaatgagcgg 102751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 163820 - 163860
Alignment:
Q  19 ttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    ||||||||||||||||||||| |||||||| ||||||||||    
T  163820 ttaggttaaataattgcaaacctaataaagcaaatgagcgg 163860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 12400 - 12443
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgagcgg 59  Q
    |||||||||||||||||||||||| |||||||  ||||||||||    
T  12400 ttgttaggttaaataattgcaaacctaataaaacaaatgagcgg 12443  T

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Target: scaffold0504 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 1551 - 1621
Alignment:
Q  19 ttaggttaaataattgcaaacataataaagtaaatgagcggnnnnnnnnttaggttaaattgctgcagacg 89  Q
    ||||||||||||||||||||| |||||||| ||||||| ||        |||| |||||||||||||||||    
T  1551 ttaggttaaataattgcaaacttaataaagcaaatgagtgggaaaaaatttagattaaattgctgcagacg 1621  T

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Target: scaffold0240 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 13342 - 13302
Alignment:
Q  16 ttgttaggttaaataattgcaaacataataaagtaaatgag 56  Q
    |||||||||||||||||||||| | |||||||| |||||||    
T  13342 ttgttaggttaaataattgcaaccctaataaagcaaatgag 13302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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