View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20179_low_6 (Length: 625)
Name: NF20179_low_6
Description: NF20179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20179_low_6 |
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| [»] scaffold0066 (2 HSPs) |
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Alignment Details
Target: scaffold0066 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: scaffold0066
Description:
Target: scaffold0066; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 336 - 625
Target Start/End: Original strand, 32267 - 32556
Alignment:
| Q |
336 |
tattcaccatcgtccataccttgaggataacttgtgaaccatctagtgtctcaacactaatctcaataacagtcggcaaaactgcaaaggacgaggtaaa |
435 |
Q |
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| T |
32267 |
tattcaccatcgtccataccttgaggataacttgtgaaccatctggtgtctcaacactaatctcaataacagtcggcaaaactgcaaaggacgaggtaaa |
32366 |
T |
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| Q |
436 |
aaaggataaggtggagaatttttagaaccaatgaaattgaatnnnnnnntgataacaatgcaattagatagacagccataagatacaagtaaacttgggt |
535 |
Q |
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| T |
32367 |
aaaggataaggtggagaatttttagaaccaatgaaattgaataaaaaaatgataacaatgcaattagatagacagccataagatacaagtaaacttgggt |
32466 |
T |
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| Q |
536 |
ttcaagtttaagcgttttttgtataaacatgaatgaaaaattggctaataataaagaggaaatgaagtttcatatatagtaatcgaacct |
625 |
Q |
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| T |
32467 |
ttcaagtttaagcgttttttgtattaacatgaatgaaaaattggctaataataaagaggaaatgaagtttcatatatagtaatcgaacct |
32556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0066; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 31932 - 32196
Alignment:
| Q |
1 |
cattgatttaatattaaatcaatgtaaaattgatgatgatgtaatatcacatcactgtaattatatataagggttgacataacatcttgaaacaaatttg |
100 |
Q |
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| T |
31932 |
cattgatttaacattaaatcaatgtaaaattgatgatgatgtaatatcacaacactgtaattatatataagggttgacataacagcttgaaacaaatttg |
32031 |
T |
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| Q |
101 |
ttgaacgggttttgcttgctagttaaaaatctcttcgattttagttatgnnnnnnnaactgacttctatgaagatttgaaagaatacacttattcattct |
200 |
Q |
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| T |
32032 |
ttgaacaggttttgcttgctagttaaaaatatctttgattttagttatgtttttttaactgacttctatgaagatttgttagaatacgcttattcattct |
32131 |
T |
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| Q |
201 |
ttaggagtatttaaatgattggtaaatagaatcttcttaagtaaacgctaaggagtgtttatctt |
265 |
Q |
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| T |
32132 |
ttaggagtatttaaataattggtaaatagaaacttcttaagtaaacgctaaggagtgtttatctt |
32196 |
T |
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