View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20179_low_61 (Length: 314)
Name: NF20179_low_61
Description: NF20179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20179_low_61 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 15 - 299
Target Start/End: Complemental strand, 12881056 - 12880779
Alignment:
| Q |
15 |
gacaaatcacccaatgagcagtttttggttcttttgccggttggttagatgggagactgaatagctatggtcttagggcctgcatcagccgtgaactgct |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
12881056 |
gacaaatcacccaatgagcagtttttggttcttttgccggttggttggatgggagactgaatagctatggtcttag-------atcagccgtgaactgct |
12880964 |
T |
|
| Q |
115 |
cagaagaatcaccagcattaaaagtcttttgattgatagtttcaaaaggtacagccaatggagttccgcattgatttcttcaacagaattgtttgtttcc |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
12880963 |
cagaagaatcaccagcattaaaagtcttttgattgatagcttcaaaaggtacagccaatggagttccgtattgatttcttcaacagaattgtttgtttcc |
12880864 |
T |
|
| Q |
215 |
gatccattgctacccctttgttccgcttgagagtcgaaattaatattccaaaccttatcagaatatccaatatcttggtggaatc |
299 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12880863 |
gatccattgctatccctttgttccgcttgagagtcgaaattaatattccaaaccttatcagaatatccaatatcttggtggaatc |
12880779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 39 - 134
Target Start/End: Complemental strand, 6349226 - 6349131
Alignment:
| Q |
39 |
ttggttcttttgccggttggttagatgggagactgaatagctatggtcttagggcctgcatcagccgtgaactgctcagaagaatcaccagcatta |
134 |
Q |
| |
|
||||||||||| || |||||| || |||||||||||||||| ||||||||||| |||||||| ||||||||||||||| |||||||||| ||||| |
|
|
| T |
6349226 |
ttggttctttttccagttggtatgaagggagactgaatagctgtggtcttagggactgcatcatccgtgaactgctcaggagaatcaccaccatta |
6349131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 124 - 181
Target Start/End: Complemental strand, 6359288 - 6359231
Alignment:
| Q |
124 |
caccagcattaaaagtcttttgattgatagtttcaaaaggtacagccaatggagttcc |
181 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||||| ||||||||| ||||| ||||| |
|
|
| T |
6359288 |
caccagcattaaaagtcttttcattggtagtttcaacaggtacagctaatggtgttcc |
6359231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 235
Target Start/End: Complemental strand, 6349116 - 6349071
Alignment:
| Q |
190 |
ttcttcaacagaattgtttgtttccgatccattgctacccctttgt |
235 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
6349116 |
ttcttcaatagaattgtttgtttccgatgcattgctacccccttgt |
6349071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 180
Target Start/End: Complemental strand, 6372728 - 6372674
Alignment:
| Q |
126 |
ccagcattaaaagtcttttgattgatagtttcaaaaggtacagccaatggagttc |
180 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||||||||||| ||||| |||| |
|
|
| T |
6372728 |
ccagcattaaaagtctttccgttggtagtttcaaaaggtacagcaaatggtgttc |
6372674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University