View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20179_low_65 (Length: 283)
Name: NF20179_low_65
Description: NF20179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20179_low_65 |
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Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 11 - 280
Target Start/End: Original strand, 40665617 - 40665886
Alignment:
| Q |
11 |
gaacctgtgaaaagagaggatgaagaaagacttgatgaagttggttatgatgatgtgggtggtgttaggaagcaaatggcacagattcgcgagttggtcg |
110 |
Q |
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| T |
40665617 |
gaacctgtgaaaagagatgatgaagaaagacttgatgaagttggttatgatgatgtgggtggtgttaggaagcaaatggcacagattcgcgagttggtcg |
40665716 |
T |
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| Q |
111 |
agcttccactgaggcatccacaactttttaagtcaattggtgtgaaagcacctaaaggaattttgctttctggaccaccaggtaccggaaagacattaat |
210 |
Q |
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| T |
40665717 |
agcttccacttaggcatccacaactttttaagtcaattggtgcgaaagcacctaaaggaattttgctttctggacccccaggtaccggaaagacattaat |
40665816 |
T |
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| Q |
211 |
agcaagagctattgctaatgaaactggagctttcttcttttgtattaatggaccagagattatgtccaaa |
280 |
Q |
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| T |
40665817 |
agcaagagctattgctaatgaaactggagctttcttcttttgtattaatggaccagagattatgtccaaa |
40665886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 11 - 280
Target Start/End: Complemental strand, 40724437 - 40724180
Alignment:
| Q |
11 |
gaacctgtgaaaagagaggatgaagaaagacttgatgaagttggttatgatgatgtgggtggtgttaggaagcaaatggcacagattcgcgagttggtcg |
110 |
Q |
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| T |
40724437 |
gaacccgtgaaaagagaggatgaagaaaggcttgatgaagtcggttatgatgatgtgggtggttttaggaagcaaatggcacagatccgtgagttggtcg |
40724338 |
T |
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| Q |
111 |
agcttccactgaggcatccacaactttttaagtcaattggtgtgaaagcacctaaaggaattttgctttctggaccaccaggtaccggaaagacattaat |
210 |
Q |
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| T |
40724337 |
agcttccac------------aactttttaagtcaattggtgtgaaaccacccaaaggaatttttctatatggacccccaggttctggaaagacattaat |
40724250 |
T |
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| Q |
211 |
agcaagagctattgctaatgaaactggagctttcttcttttgtattaatggaccagagattatgtccaaa |
280 |
Q |
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| T |
40724249 |
agcaagagctgttgctaatgaaactggagctttcttcttttgtattaatggaccagagattatgtccaaa |
40724180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 44 - 276
Target Start/End: Original strand, 27977061 - 27977293
Alignment:
| Q |
44 |
gatgaagttggttatgatgatgtgggtggtgttaggaagcaaatggcacagattcgcgagttggtcgagcttccactgaggcatccacaactttttaagt |
143 |
Q |
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| T |
27977061 |
gatgaggttggttatgatgatgttggtggtgttagaaagcagatggctcagattcgggaactggtggaactgccattgaggcatccacaattattcaagt |
27977160 |
T |
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| Q |
144 |
caattggtgtgaaagcacctaaaggaattttgctttctggaccaccaggtaccggaaagacattaatagcaagagctattgctaatgaaactggagcttt |
243 |
Q |
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| T |
27977161 |
ctattggtgtgaagccaccaaaagggattttgttgtatggaccccctggatctggtaagactttaattgcacgagctgttgcaaatgaaactggtgcttt |
27977260 |
T |
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| Q |
244 |
cttcttttgtattaatggaccagagattatgtc |
276 |
Q |
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||| || ||||| ||||| || ||||| ||||| |
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| T |
27977261 |
ctttttctgtatcaatggtcctgagatcatgtc |
27977293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 44 - 153
Target Start/End: Complemental strand, 41093243 - 41093134
Alignment:
| Q |
44 |
gatgaagttggttatgatgatgtgggtggtgttaggaagcaaatggcacagattcgcgagttggtcgagcttccactgaggcatccacaactttttaagt |
143 |
Q |
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||||| |||||||||||||| || |||||||| || ||||| |||||||||||| | || |||| || | ||||||||||| |||||| | || |||| |
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| T |
41093243 |
gatgaggttggttatgatgacgttggtggtgtgagaaagcagatggcacagattagggaactggttgaattgccactgaggcacccacaattattcaagt |
41093144 |
T |
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| Q |
144 |
caattggtgt |
153 |
Q |
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| T |
41093143 |
ctattggtgt |
41093134 |
T |
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