View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20179_low_68 (Length: 278)
Name: NF20179_low_68
Description: NF20179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20179_low_68 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 19 - 266
Target Start/End: Complemental strand, 27093262 - 27093015
Alignment:
| Q |
19 |
aggacgttctcggcacaggagctatgaaaactgtatacagagcatttgatgagttccttgggattgaagtggcttggaaccaagtcaaacttggtgatgt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27093262 |
aggacgttctcggcacaggagctatgaaaactgtatacagagcatttgatgagttccttgggattgaagtggcttggaaccaagtcaaacttggtgatgt |
27093163 |
T |
|
| Q |
119 |
ttgtcattcaccagatcaacttcaacgactttattccgaggttcatctccttaagcaccttgaccataaatccatgatgatcttctatggttcatggatt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
27093162 |
ttgtcattcaccagatcaacttcaacgactttattcagaggttcatctccttaagcacctcgaccataaatccatgatgatcttctatggttcttggatt |
27093063 |
T |
|
| Q |
219 |
gatatcaatggcaaaaccttcaacttcatcactgaattgttcatctca |
266 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
27093062 |
gatatcaatggcaaaaccttcaacttcatcactgaattgttcacctca |
27093015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 19 - 266
Target Start/End: Original strand, 27185039 - 27185286
Alignment:
| Q |
19 |
aggacgttctcggcacaggagctatgaaaactgtatacagagcatttgatgagttccttgggattgaagtggcttggaaccaagtcaaacttggtgatgt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27185039 |
aggacgttctcggcacaggagctatgaaaactgtatacagagcatttgatgagttccttgggattgaagtggcttggaaccaagtcaaacttggtgatgt |
27185138 |
T |
|
| Q |
119 |
ttgtcattcaccagatcaacttcaacgactttattccgaggttcatctccttaagcaccttgaccataaatccatgatgatcttctatggttcatggatt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
27185139 |
ttgtcattcaccagatcaacttcaacgactttattcagaggttcatctccttaagcacctcgaccataaatccatgatgatcttctatggttcttggatt |
27185238 |
T |
|
| Q |
219 |
gatatcaatggcaaaaccttcaacttcatcactgaattgttcatctca |
266 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
27185239 |
gatatcaatggcaaaaccttcaacttcatcactgaattgttcacctca |
27185286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 60 - 261
Target Start/End: Original strand, 9906964 - 9907165
Alignment:
| Q |
60 |
gcatttgatgagttccttgggattgaagtggcttggaaccaagtcaaacttggtgatgtttgtcattcaccagatcaacttcaacgactttattccgagg |
159 |
Q |
| |
|
||||||||||| | || || || |||||||| ||||||||| |||| |||| |||||||| |||||||||||||||||||||||| || ||||| |||| |
|
|
| T |
9906964 |
gcatttgatgaagttctaggaatagaagtggcatggaaccaaatcaagcttgatgatgtttttcattcaccagatcaacttcaacgtctctattcagagg |
9907063 |
T |
|
| Q |
160 |
ttcatctccttaagcaccttgaccataaatccatgatgatcttctatggttcatggattgatatcaatggcaaaaccttcaacttcatcactgaattgtt |
259 |
Q |
| |
|
|||||||||| || || | || ||| | || || |||| ||| ||||| | ||||||||| |||| | | ||||||||||||||||||||||||||| |
|
|
| T |
9907064 |
ttcatctcctaaaaaacttggatcatgactctatcatgactttccatggtacttggattgatgccaattgtagaaccttcaacttcatcactgaattgtt |
9907163 |
T |
|
| Q |
260 |
ca |
261 |
Q |
| |
|
|| |
|
|
| T |
9907164 |
ca |
9907165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University