View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20179_low_7 (Length: 621)
Name: NF20179_low_7
Description: NF20179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20179_low_7 |
 | |
|
| [»] scaffold0094 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 164; Significance: 2e-87; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 175 - 358
Target Start/End: Original strand, 13937597 - 13937780
Alignment:
| Q |
175 |
tttcaaggtattactatccactctctctattataatgtgtgttctcttcaacaaatcaaccatgttcccataaacttgtacctgatttttggttcaattt |
274 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
13937597 |
tttcaaggtattactatccactctctctattataatgtgtgttctcttcaacaaatcaaccatgttcccataaacttgtacttgatttttggttcaattt |
13937696 |
T |
|
| Q |
275 |
cttgtgtttattttgttttacttgttaggatttttagtgtgcttaactacatggacctggattcacctttgttgttgaaatata |
358 |
Q |
| |
|
||||| ||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13937697 |
cttgtatttattttgttttacttattagggtttttagtgttcttaactacatggacctggattcacctttgttgttgaaatata |
13937780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 175 - 358
Target Start/End: Original strand, 39286628 - 39286811
Alignment:
| Q |
175 |
tttcaaggtattactatccactctctctattataatgtgtgttctcttcaacaaatcaaccatgttcccataaacttgtacctgatttttggttcaattt |
274 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
39286628 |
tttcaaggtattactattcactctctctattataatgtgtgttctcttcaacaaatcaaccatgttcccataaacttgtacttgatttttggttcaattt |
39286727 |
T |
|
| Q |
275 |
cttgtgtttattttgttttacttgttaggatttttagtgtgcttaactacatggacctggattcacctttgttgttgaaatata |
358 |
Q |
| |
|
||||| ||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39286728 |
cttgtttttattttgttttacttattagggtttttagtgttcttaactacatggacctggattcacctttgttgttgaaatata |
39286811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 153; E-Value: 9e-81
Query Start/End: Original strand, 427 - 615
Target Start/End: Original strand, 13937850 - 13938038
Alignment:
| Q |
427 |
tttttattcccttagcattgtttttaggtgctgttttgcttaggtgggtgttcctttggtttctattgtttgctaagatccatactcatgttaagattga |
526 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
13937850 |
tttttattcccttagtattgtttttaggtgatgttttgcttaggtgggtgttgctttggtttatattgtttgctaagatccatactcacgttaagcttga |
13937949 |
T |
|
| Q |
527 |
ttcctatgtgtttcttgatttttgaagttttaatctttcggtggtttgtgtgggggtgttggcggttttttcgtgttgtctctgtgctc |
615 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||| |
|
|
| T |
13937950 |
ttcctatgtgtttcttgatttttgaagttttaatctttcggtggtttgtgtgggggtgttggcagttttttggtgttgtctcggtgctc |
13938038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 425 - 615
Target Start/End: Original strand, 39286878 - 39287068
Alignment:
| Q |
425 |
gatttttattcccttagcattgtttttaggtgctgttttgcttaggtgggtgttcctttggtttctattgtttgctaagatccatactcatgttaagatt |
524 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||| |||||| || |
|
|
| T |
39286878 |
gatttttattcccttagtattgtttttaggtgatgttttgcttaggtgggtgttgctttggtttatattgttttctaagatccatactcacgttaagctt |
39286977 |
T |
|
| Q |
525 |
gattcctatgtgtttcttgatttttgaagttttaatctttcggtggtttgtgtgggggtgttggcggttttttcgtgttgtctctgtgctc |
615 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||| |
|
|
| T |
39286978 |
gattcctatgtgtttcttgatttttgaagttttaatctttcggtggtttgtgtgggggtgttggaggttttttggtgttgtctcggtgctc |
39287068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 175 - 358
Target Start/End: Original strand, 9987422 - 9987604
Alignment:
| Q |
175 |
tttcaaggtattactatccactctctctattataatgtgtgttctcttcaacaaatcaaccatgttcccataaacttgtacctgatttttggttcaattt |
274 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||| ||||||| || ||||||||| |
|
|
| T |
9987422 |
tttcaaggtattaccattcactctctctattataatatatgttcttttcaacaaatcaaccatgttcccataaacttgtgcctgattctttgttcaattt |
9987521 |
T |
|
| Q |
275 |
cttgtgtttattttgttttacttgttaggatttttagtgtgcttaactacatggacctggattcacctttgttgttgaaatata |
358 |
Q |
| |
|
| | ||||||||||||||| || ||||| |||||||||||||||||||| | ||||| |||||| |||| |||||||||||| |
|
|
| T |
9987522 |
c-agggtttattttgttttatttattagggtttttagtgtgcttaactacctagacctagattcatgtttgatgttgaaatata |
9987604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 179 - 355
Target Start/End: Complemental strand, 17218479 - 17218303
Alignment:
| Q |
179 |
aaggtattactatccactctctctatta-taatgtgtgttctcttcaacaaatcaaccatgttcccataaacttgtacctgatttttggttcaatttctt |
277 |
Q |
| |
|
|||||||||| || |||||||||||||| |||| |||||| ||||||| ||||||||||||||||||||||||||||| ||||| |||||| ||| | |
|
|
| T |
17218479 |
aaggtattaccattcactctctctattaataatatgtgttatcttcaaaaaatcaaccatgttcccataaacttgtacttgattcttggttttgttt-ta |
17218381 |
T |
|
| Q |
278 |
gtgtttattttgttttacttgttaggatttttagtgtgcttaactacatggacctggattcacctttgttgttgaaat |
355 |
Q |
| |
|
| |||||||||||||||||| ||||| |||||| |||||| || | | |||||||||||| |||| ||||||||| |
|
|
| T |
17218380 |
gggtttattttgttttacttattagggattttagagtgctttaccatctagacctggattcatgtttgctgttgaaat |
17218303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 164; Significance: 2e-87; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 175 - 358
Target Start/End: Complemental strand, 15259864 - 15259681
Alignment:
| Q |
175 |
tttcaaggtattactatccactctctctattataatgtgtgttctcttcaacaaatcaaccatgttcccataaacttgtacctgatttttggttcaattt |
274 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
15259864 |
tttcaaggtattactattcactctctctattataatgtgtgttctcttcaacaaatcaaccatgttcccataaacttgtacttgatttttggttcaattt |
15259765 |
T |
|
| Q |
275 |
cttgtgtttattttgttttacttgttaggatttttagtgtgcttaactacatggacctggattcacctttgttgttgaaatata |
358 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15259764 |
cttgtgtttattttgttttacttattagggtttttagtgttcttaactacatggacctggattcacctttgttgttgaaatata |
15259681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 425 - 589
Target Start/End: Complemental strand, 15259614 - 15259450
Alignment:
| Q |
425 |
gatttttattcccttagcattgtttttaggtgctgttttgcttaggtgggtgttcctttggtttctattgtttgctaagatccatactcatgttaagatt |
524 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
15259614 |
gatttttactcccttagtattgtttttaggtgctgttttgcttaggtgggtgttgctttggtttatattgtttgctaagatccatactcatgttaagatt |
15259515 |
T |
|
| Q |
525 |
gattcctatgtgtttcttgatttttgaagttttaatctttcggtggtttgtgtgggggtgttggc |
589 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15259514 |
gattcctatgtgtttcttgatttttgaagttttaatctttcggtggtttgtgtgggggtgttggc |
15259450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 493 - 615
Target Start/End: Complemental strand, 15259456 - 15259334
Alignment:
| Q |
493 |
tgtttgctaagatccatactcatgttaagattgattcctatgtgtttcttgatttttgaagttttaatctttcggtggtttgtgtgggggtgttggcggt |
592 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15259456 |
tgttggctaagatccatactcatgttaagattgattcctatgtgtttcttgatttttgaagttttaatctttcggtggtttgtgtgggggtgttggcggt |
15259357 |
T |
|
| Q |
593 |
tttttcgtgttgtctctgtgctc |
615 |
Q |
| |
|
||||| |||||||||| |||||| |
|
|
| T |
15259356 |
tttttggtgttgtctcggtgctc |
15259334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 179 - 355
Target Start/End: Original strand, 33590845 - 33591020
Alignment:
| Q |
179 |
aaggtattactatccactctctctattataatgtgtgttctcttcaacaaatcaaccatgttcccataaacttgtacctgatttttggttcaatttcttg |
278 |
Q |
| |
|
||||||| || || |||||||||||||| ||| ||| ||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||| | | |
|
|
| T |
33590845 |
aaggtatcaccattcactctctctattacaatatgtattctcttcaacaaatcaaccatgtttccataaacttgtacctgattcttagttcaattt-tag |
33590943 |
T |
|
| Q |
279 |
tgtttattttgttttacttgttaggatttttagtgtgcttaactacatggacctggattcacctttgttgttgaaat |
355 |
Q |
| |
|
|||||||| |||||||| ||| | ||||| |||||||||||||| | ||||||||||||| |||| ||||||||| |
|
|
| T |
33590944 |
gatttattttattttacttattaaggtttttggtgtgcttaactacctagacctggattcacgtttgctgttgaaat |
33591020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 149; Significance: 2e-78; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 175 - 347
Target Start/End: Original strand, 31140328 - 31140500
Alignment:
| Q |
175 |
tttcaaggtattactatccactctctctattataatgtgtgttctcttcaacaaatcaaccatgttcccataaacttgtacctgatttttggttcaattt |
274 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
31140328 |
tttcaaggtattactacccactctctctattataatgggtgttctcttcaacaaatcaaccatgttcccataaatttgtacctgatttttggttcaattt |
31140427 |
T |
|
| Q |
275 |
cttgtgtttattttgttttacttgttaggatttttagtgtgcttaactacatggacctggattcacctttgtt |
347 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31140428 |
cttgtgtttattttgttttacttaatagggtttttagtgtgcttaactacatggacctggattcacctttgtt |
31140500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 425 - 614
Target Start/End: Original strand, 31140588 - 31140780
Alignment:
| Q |
425 |
gatttttattcccttagcattgtttttaggtgctgttttgcttaggtgggtgttcctttggtttctattgtttgctaagatccatactcatgttaag--a |
522 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||| | |
|
|
| T |
31140588 |
gatttttattcccttagtattgtttttaggtgctgttttgcttaggtgggtgttgctttggtttatattgtttgctaagatccatattcatgttaaggaa |
31140687 |
T |
|
| Q |
523 |
ttgattcctatgtg-tttcttgat-ttttgaagttttaatctttcggtggtttgtgtgggggtgttggcggttttttcgtgttgtctctgtgct |
614 |
Q |
| |
|
| ||| || ||| | | ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
31140688 |
gtcatt-ttaggtgctgttttgctgttttgaagttttaatctttcggtggtttgtgtgggggtgttggcggttttttggtgttgtctcggtgct |
31140780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 146; Significance: 1e-76; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 18 - 190
Target Start/End: Complemental strand, 18747898 - 18747729
Alignment:
| Q |
18 |
aggtctacattgtactctccaagaaagcttaaaaactctttgaagttctgttcagttggatgatagtgtccactttatgcccaaatagccttcatttttg |
117 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18747898 |
aggtctacattg-actctccaagaaagcttaaaaactct--gaagttctgttcagttgaatgatagtgtccactttatgcccaaatagccttcatttttg |
18747802 |
T |
|
| Q |
118 |
tgtagtggataataattaataacaatttcatctatgatcactactaaaatagagtgatttcaaggtattacta |
190 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
18747801 |
tgtagtggataataattaataacaatttcatctatgatcactactaaaatacagtgatttcaaggtattacta |
18747729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 52367688 - 52367822
Alignment:
| Q |
18 |
aggtctacattgtactctccaagaaagcttaaaaactctttgaagttctgttcagttggatgatagtgtccactttatgcccaaatagccttcatttttg |
117 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||| ||||||||||||| ||| |||||||| ||||||||||| |||| ||||||||||| ||||||| |
|
|
| T |
52367688 |
aggtctacattgtgctctccaagaaagcttataaattctttgaagttctcttctgttggatggtagtgtccactgtatggccaaatagcctgcattttta |
52367787 |
T |
|
| Q |
118 |
tgtagtggataataattaataacaatttcatctat |
152 |
Q |
| |
|
|||||||||| |||||||||||||| |||| |||| |
|
|
| T |
52367788 |
tgtagtggatgataattaataacaacttcagctat |
52367822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 213 - 354
Target Start/End: Original strand, 30231040 - 30231180
Alignment:
| Q |
213 |
gtgttctcttcaacaaatcaaccatgttcccataaacttgtacctgatttttggttcaatttcttgtgtttattttgttttacttgttaggatttttagt |
312 |
Q |
| |
|
||||| ||||||||||||||| |||||| |||||||||||||| |||| |||||||||||| | | |||||||||||||||||| ||||||||||| || |
|
|
| T |
30231040 |
gtgttttcttcaacaaatcaagcatgttaccataaacttgtacatgatgcttggttcaattt-tagggtttattttgttttacttattaggattttttgt |
30231138 |
T |
|
| Q |
313 |
gtgcttaactacatggacctggattcacctttgttgttgaaa |
354 |
Q |
| |
|
||| |||||||| | ||| |||||||| |||| |||||||| |
|
|
| T |
30231139 |
gtgtttaactacctagacttggattcatgtttgctgttgaaa |
30231180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 221 - 303
Target Start/End: Complemental strand, 18748751 - 18748671
Alignment:
| Q |
221 |
ttcaacaaatcaaccatgttcccataaacttgtacctgatttttggttcaatttcttgtgtttattttgttttacttgttagg |
303 |
Q |
| |
|
||||||||||| | |||||| |||||||||||||||||||| || ||||||||| | | |||||||||||||||||| ||||| |
|
|
| T |
18748751 |
ttcaacaaatctagcatgttaccataaacttgtacctgattctt-gttcaattt-tagggtttattttgttttacttattagg |
18748671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 280 - 324
Target Start/End: Complemental strand, 18748670 - 18748626
Alignment:
| Q |
280 |
gtttattttgttttacttgttaggatttttagtgtgcttaactac |
324 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
18748670 |
gtttattttgttttacttattagggtttttagtgtgcttaactac |
18748626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 102; Significance: 2e-50; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 18 - 155
Target Start/End: Original strand, 23247904 - 23248041
Alignment:
| Q |
18 |
aggtctacattgtactctccaagaaagcttaaaaactctttgaagttctgttcagttggatgatagtgtccactttatgcccaaatagccttcatttttg |
117 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
23247904 |
aggtctacattatgctctccaagaaagcttaaaaactctttgaagttctcttaagttggatgatagtatccactttatggccaaatagccttcatttttg |
23248003 |
T |
|
| Q |
118 |
tgtagtggataataattaataacaatttcatctatgat |
155 |
Q |
| |
|
||||||||||||||||||||||||| || | ||||||| |
|
|
| T |
23248004 |
tgtagtggataataattaataacaacttaagctatgat |
23248041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 213 - 354
Target Start/End: Original strand, 23246701 - 23246840
Alignment:
| Q |
213 |
gtgttctcttcaacaaatcaaccatgttcccataaacttgtacctgatttttggttcaatttcttgtgtttattttgttttacttgttaggatttttagt |
312 |
Q |
| |
|
||||| ||||||||||||||| |||||| |||||||||||||||||||| ||| |||||||| | | |||||||||||||||||| ||||| |||||||| |
|
|
| T |
23246701 |
gtgttttcttcaacaaatcaagcatgttaccataaacttgtacctgattcttg-ttcaattt-tagggtttattttgttttacttattagggtttttagt |
23246798 |
T |
|
| Q |
313 |
gtgcttaactacatggacctggattcacctttgttgttgaaa |
354 |
Q |
| |
|
|||||||||||| | ||| | |||||| |||| |||||||| |
|
|
| T |
23246799 |
gtgcttaactacctagacatagattcatgtttgatgttgaaa |
23246840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 100; Significance: 4e-49; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 20 - 155
Target Start/End: Original strand, 24252742 - 24252877
Alignment:
| Q |
20 |
gtctacattgtactctccaagaaagcttaaaaactctttgaagttctgttcagttggatgatagtgtccactttatgcccaaatagccttcatttttgtg |
119 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
24252742 |
gtctacattatgctctccaagaaagcttaaaaactctttgaagttctcttcaattggatgatagtatccactttatggccaaatagccttcatttttgtg |
24252841 |
T |
|
| Q |
120 |
tagtggataataattaataacaatttcatctatgat |
155 |
Q |
| |
|
||||||||||||||||||||||| || | ||||||| |
|
|
| T |
24252842 |
tagtggataataattaataacaactttagctatgat |
24252877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 175 - 358
Target Start/End: Original strand, 14330807 - 14330989
Alignment:
| Q |
175 |
tttcaaggtattactatccactctctctattataatgtgtgttctcttcaacaaatcaaccatgttcccataaacttgtacctgatttttggttcaattt |
274 |
Q |
| |
|
|||||||||||||| || |||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||| || ||||||||| |
|
|
| T |
14330807 |
tttcaaggtattaccattcactctctatattataatatgtgttcttgtcaacaaatcaaccatgttcccataaacttgtgactgattctttgttcaattt |
14330906 |
T |
|
| Q |
275 |
cttgtgtttattttgttttacttgttaggatttttagtgtgcttaactacatggacctggattcacctttgttgttgaaatata |
358 |
Q |
| |
|
| | ||||||||| ||||| || ||||| |||||||||||||||||||| | |||||||||||| |||| |||||||||||| |
|
|
| T |
14330907 |
c-agggtttatttttttttatttcttagggtttttagtgtgcttaactacctagacctggattcatgtttgatgttgaaatata |
14330989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 214 - 324
Target Start/End: Original strand, 24251537 - 24251645
Alignment:
| Q |
214 |
tgttctcttcaacaaatcaaccatgttcccataaacttgtacctgatttttggttcaatttcttgtgtttattttgttttacttgttaggatttttagtg |
313 |
Q |
| |
|
|||| ||||||||||||||| |||||| ||||||||||||||||| || ||| |||||||| | | |||||||||||||||||| ||||| ||||||||| |
|
|
| T |
24251537 |
tgttttcttcaacaaatcaagcatgttaccataaacttgtacctggttcttg-ttcaattt-tagggtttattttgttttacttattagggtttttagtg |
24251634 |
T |
|
| Q |
314 |
tgcttaactac |
324 |
Q |
| |
|
||||||||||| |
|
|
| T |
24251635 |
tgcttaactac |
24251645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0094 (Bit Score: 96; Significance: 9e-47; HSPs: 1)
Name: scaffold0094
Description:
Target: scaffold0094; HSP #1
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 179 - 358
Target Start/End: Original strand, 6810 - 6988
Alignment:
| Q |
179 |
aaggtattactatccactctctctattataatgtgtgttctcttcaacaaatcaaccatgttcccataaacttgtacctgatttttggttcaatttcttg |
278 |
Q |
| |
|
|||||||||| || |||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| | | |
|
|
| T |
6810 |
aaggtattaccattcactctctatattataatatgtgttctcttcaataaatcaaccatgttcccataaacttgtacctgattcttggttcaattt-tag |
6908 |
T |
|
| Q |
279 |
tgtttattttgttttacttgttaggatttttagtgtgcttaactacatggacctggattcacctttgttgttgaaatata |
358 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||| || ||| || || | |||||||||||| ||| ||||||||||||| |
|
|
| T |
6909 |
ggtttattttgttttacttattagggtttttagcgtcctttaccacctagacctggattcatgtttattgttgaaatata |
6988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 96; Significance: 9e-47; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 175 - 358
Target Start/End: Original strand, 21724279 - 21724461
Alignment:
| Q |
175 |
tttcaaggtattactatccactctctctattataatgtgtgttctcttcaacaaatcaaccatgttcccataaacttgtacctgatttttggttcaattt |
274 |
Q |
| |
|
|||||||||||||| || |||||||| ||||||||| |||||||| |||||||||||||||||| ||||||||||||| ||||||| || ||||||||| |
|
|
| T |
21724279 |
tttcaaggtattaccattcactctctatattataatatgtgttcttgtcaacaaatcaaccatgtacccataaacttgtgcctgattctttgttcaattt |
21724378 |
T |
|
| Q |
275 |
cttgtgtttattttgttttacttgttaggatttttagtgtgcttaactacatggacctggattcacctttgttgttgaaatata |
358 |
Q |
| |
|
| | ||||||||||||||| || ||||| |||||||||||||||||||| | |||||||||||| |||| |||||||||||| |
|
|
| T |
21724379 |
c-agggtttattttgttttatttattagggtttttagtgtgcttaactacctagacctggattcatgtttgatgttgaaatata |
21724461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 175 - 358
Target Start/End: Original strand, 21804015 - 21804197
Alignment:
| Q |
175 |
tttcaaggtattactatccactctctctattataatgtgtgttctcttcaacaaatcaaccatgttcccataaacttgtacctgatttttggttcaattt |
274 |
Q |
| |
|
|||||||||||||| || |||||||| ||||||||| |||||||| |||||||||||||||||| ||||||||||||| ||||||| || ||||||||| |
|
|
| T |
21804015 |
tttcaaggtattaccattcactctctatattataatatgtgttcttgtcaacaaatcaaccatgtacccataaacttgtgcctgattctttgttcaattt |
21804114 |
T |
|
| Q |
275 |
cttgtgtttattttgttttacttgttaggatttttagtgtgcttaactacatggacctggattcacctttgttgttgaaatata |
358 |
Q |
| |
|
| | ||||||||||||||| || ||||| |||||||||||||||||||| | |||||||||||| |||| |||||||||||| |
|
|
| T |
21804115 |
c-agggtttattttgttttatttattagggtttttagtgtgcttaactacctagacctggattcatgtttgatgttgaaatata |
21804197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University