View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20179_low_72 (Length: 259)
Name: NF20179_low_72
Description: NF20179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20179_low_72 |
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Alignment Details
Target: chr8 (Bit Score: 176; Significance: 7e-95; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 35019220 - 35018974
Alignment:
| Q |
1 |
attcatcattgtattagttgcctaaggttatccacatttcttaaaaaataaagttggctaaatggtcaaatccttataa-------tgctaacttaaagg |
93 |
Q |
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| T |
35019220 |
attcatcattgtattagttgcctaaggttatccacatttcttaaaaaataaagttggctaaatggtcaaatccttataaattataatgctaacctaaagg |
35019121 |
T |
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| Q |
94 |
caaaatgtgaacaagttatggatttatgatgtttatatattcacgttgcatgtcaagctatatgaactcaatttgtattacttaaatataaagtagcttt |
193 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
35019120 |
caaaatgtgaacaagttatggatttatgatgttcatatattcacgttgcatgtcaagctatatgaactc-atttgtattacttaaatataaagtagcttt |
35019022 |
T |
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| Q |
194 |
cagaaagaaagnnnnnnngacatcatacatctttgtatttatttattctattcat |
248 |
Q |
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||| || ||| ||||||||||||||||||||||||||||||||||||| |
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| T |
35019021 |
caggaaaaaa-------agacatcatacatctttgtatttatttattctattcat |
35018974 |
T |
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