View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20179_low_74 (Length: 252)
Name: NF20179_low_74
Description: NF20179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20179_low_74 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 4961205 - 4960966
Alignment:
| Q |
1 |
cattacaccatagagttgaaaatcaaattgtcttatgtcatctttaattcggccaaacaagtgtcacatttacttgttcttaatgtttttatgcgtttat |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
4961205 |
cattacaccataaagttgaaaatcaaattgtcttatgtcatctttaattcggccaaacaagtgtcacatttacttgttcttaatgtttttatgtgtttat |
4961106 |
T |
|
| Q |
101 |
gaatgtttgtaaatctatgtatgtgttggatgattattaaccataacttttgatacgtgatctatgacagttgttcgaatgataacagttttagagatat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
4961105 |
gaatgtttgtaaatctatgtatgtgttggatgattattagccataattttttatacgtgatctatgacagttgttcgaatgataatagttttagacatat |
4961006 |
T |
|
| Q |
201 |
tgtattaccaatttcgtgacatttaaattaatgttcttca |
240 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
4961005 |
tgtattaccaatttcgtgacatttaagttaatgttcttca |
4960966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 74 - 161
Target Start/End: Original strand, 40649250 - 40649337
Alignment:
| Q |
74 |
ttgttcttaatgtttttatgcgtttatgaatgtttgtaaatctatgtatgtgttggatgattattaaccataacttttgatacgtgat |
161 |
Q |
| |
|
||||| ||||||||||||| |||| | ||||||| |||||| |||||||||||||| |||||||||| ||| ||||||||| |||| |
|
|
| T |
40649250 |
ttgttattaatgtttttatacgttaacgaatgttaataaatcaatgtatgtgttggacgattattaactatatattttgatacatgat |
40649337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 153
Target Start/End: Original strand, 34845732 - 34845798
Alignment:
| Q |
87 |
ttttatgcgtttatgaatgtttgtaaatctatgtatgtgttggatgattattaaccataacttttga |
153 |
Q |
| |
|
|||||||| |||||||||||| |||||| || ||||| ||| ||||||||||||| ||| |||||| |
|
|
| T |
34845732 |
ttttatgcatttatgaatgttcataaatcgatttatgttttgaatgattattaaccttaatttttga |
34845798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University