View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20179_low_77 (Length: 246)
Name: NF20179_low_77
Description: NF20179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20179_low_77 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 54889744 - 54889989
Alignment:
| Q |
1 |
gatctttacaagatttaaaatttcaactttatgagaatagaaaataccgctgtctcgcaaaagaatgaatttctgtatctaaaatcaagaaaattgtcaa |
100 |
Q |
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| T |
54889744 |
gatctttacaagatttaaaatttcaactttatgagaacagaaaataccgctgtctcgcaaaagaatgaatttctgtatctaaaatcaagaaaattgtcaa |
54889843 |
T |
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| Q |
101 |
ctgatgtgtgtgtatatgtacatatacaattagattacaatactatacaagcgaacaaataaagtgtcctcaaagaaatttgcaataatttttacttatt |
200 |
Q |
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| T |
54889844 |
ctgatgtgtgtgtatatgtacatatacaattagattacaatactatacaagcgaacaaataaagtgtcctcaaagaaatttgcaataatttttacttatt |
54889943 |
T |
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| Q |
201 |
ttaaatgcaaattagagcagcatagaataatagaaaatgagaaaac |
246 |
Q |
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| T |
54889944 |
ttaaatgcaaattagagcagcatagaataatagaaaatgagaaaac |
54889989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 101
Target Start/End: Original strand, 54906218 - 54906261
Alignment:
| Q |
58 |
caaaagaatgaatttctgtatctaaaatcaagaaaattgtcaac |
101 |
Q |
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| T |
54906218 |
caaaagaatgaatttatgtatttaaaatcaagaaaattgtcaac |
54906261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 116
Target Start/End: Original strand, 54895308 - 54895365
Alignment:
| Q |
57 |
gcaaaagaatgaatttctgtatctaaaatcaagaaaattgtcaactgatgtgtgtgtata |
116 |
Q |
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| T |
54895308 |
gcaaaagaatgaatttttgtatctaaattcatgaaaactgt--actgatgtgtgtatata |
54895365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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