View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20179_low_79 (Length: 243)
Name: NF20179_low_79
Description: NF20179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20179_low_79 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 1104552 - 1104333
Alignment:
| Q |
1 |
caacccaagcatgtgttgtttctggcaatttcaaactagaaaatgttccaaaaccatcattcacaccacaattccatgtttcttcgcctttgcgcacaca |
100 |
Q |
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| T |
1104552 |
caacccaagcatgtgttgtttctggcaatttcaaactagaaaatgttccaaaaccatcattcacaccacaattccatgtttcttcgccttttcgcacaca |
1104453 |
T |
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| Q |
101 |
tccttgtgtccaattaaatgtgtcccaattttgtggcgatttaggttcaaacccttctaaacattgacaaattggagactcattaggaatacattttcca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1104452 |
tccttgtgtccaattaaatgtgtcccaattttgtggcgatttaggttcaaacccttctaaacattgacaaattggagactcattaggaatacattttcca |
1104353 |
T |
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| Q |
201 |
taaggtccacaaggattata |
220 |
Q |
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|||||||||||||||||||| |
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| T |
1104352 |
taaggtccacaaggattata |
1104333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 1047525 - 1047306
Alignment:
| Q |
1 |
caacccaagcatgtgttgtttctggcaatttcaaactagaaaatgttccaaaaccatcattcacaccacaattccatgtttcttcgcctttgcgcacaca |
100 |
Q |
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||||||||| ||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1047525 |
caacccaagtatgtgttgtatctggcaatttcaatccagaaaatgttccaaaaccatcattcacaccacaattccatgtttcttcgcctttgcgcacaca |
1047426 |
T |
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| Q |
101 |
tccttgtgtccaattaaatgtgtcccaattttgtggcgatttaggttcaaacccttctaaacattgacaaattggagactcattaggaatacattttcca |
200 |
Q |
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| T |
1047425 |
tccttgtgtccaatttgatgcgtcccaattttgtggtgatttaggctcaaacccatctaaacattgacaaattggagacgggttataaatgcaatttcca |
1047326 |
T |
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| Q |
201 |
taaggtccacaaggattata |
220 |
Q |
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|| || |||||| ||||||| |
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| T |
1047325 |
tatgggccacaatgattata |
1047306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 1072338 - 1072119
Alignment:
| Q |
1 |
caacccaagcatgtgttgtttctggcaatttcaaactagaaaatgttccaaaaccatcattcacaccacaattccatgtttcttcgcctttgcgcacaca |
100 |
Q |
| |
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||||||||| ||||||||| |||||||||||||| | ||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
1072338 |
caacccaagtatgtgttgtatctggcaatttcaatccagaaaatgttctaaaacgatcattcacaccacaattccatgtttcttcacctttgcgcacaca |
1072239 |
T |
|
| Q |
101 |
tccttgtgtccaattaaatgtgtcccaattttgtggcgatttaggttcaaacccttctaaacattgacaaattggagactcattaggaatacattttcca |
200 |
Q |
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||||||||||||||| ||| || |||||||||||| |||||||| |||||||| ||||||||||| |||||||||||| ||| |||| || |||||| |
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| T |
1072238 |
tccttgtgtccaatttgatgcgtaccaattttgtggtgatttaggctcaaacccatctaaacattggcaaattggagacgggttatgaatgcaatttcca |
1072139 |
T |
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| Q |
201 |
taaggtccacaaggattata |
220 |
Q |
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||||| || ||| ||||||| |
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| T |
1072138 |
taagggccgcaacgattata |
1072119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 1087999 - 1087780
Alignment:
| Q |
1 |
caacccaagcatgtgttgtttctggcaatttcaaactagaaaatgttccaaaaccatcattcacaccacaattccatgtttcttcgcctttgcgcacaca |
100 |
Q |
| |
|
||||||||| ||||| ||| |||||||||||||| | | ||||| || |||||| ||||||||| ||||| |||| ||| || |||||||||||||| |
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| T |
1087999 |
caacccaagtatgtgatgtatctggcaatttcaatccataaaatcttacaaaactatcattcactccacatctccaatcttcgtcacctttgcgcacaca |
1087900 |
T |
|
| Q |
101 |
tccttgtgtccaattaaatgtgtcccaattttgtggcgatttaggttcaaacccttctaaacattgacaaattggagactcattaggaatacattttcca |
200 |
Q |
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||||||||||||||| ||| ||||||||||| |||||||||||| |||||||| ||||||||||| |||||||||||||| ||| ||| || |||||| |
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| T |
1087899 |
tccttgtgtccaatttgatgcgtcccaattttttggcgatttaggctcaaacccatctaaacattggcaaattggagactcgttatgaacgcaatttcca |
1087800 |
T |
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| Q |
201 |
taaggtccacaaggattata |
220 |
Q |
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||||| |||||| ||||||| |
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| T |
1087799 |
taagggccacaacgattata |
1087780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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