View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20179_low_82 (Length: 237)

Name: NF20179_low_82
Description: NF20179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20179_low_82
NF20179_low_82
[»] chr7 (3 HSPs)
chr7 (3-237)||(27134347-27134586)
chr7 (94-173)||(27158306-27158385)
chr7 (94-135)||(27147504-27147545)
[»] chr8 (10 HSPs)
chr8 (2-72)||(41841183-41841256)
chr8 (24-72)||(37679758-37679806)
chr8 (24-72)||(40054315-40054363)
chr8 (24-72)||(44878986-44879034)
chr8 (24-72)||(44880887-44880935)
chr8 (24-81)||(37682051-37682108)
chr8 (24-72)||(10944455-10944503)
chr8 (5-68)||(42220880-42220945)
chr8 (24-58)||(44582870-44582904)
chr8 (32-72)||(42872514-42872554)
[»] chr5 (3 HSPs)
chr5 (2-72)||(1716483-1716556)
chr5 (24-72)||(3643643-3643691)
chr5 (24-72)||(7524971-7525019)
[»] chr4 (9 HSPs)
chr4 (2-72)||(49106560-49106633)
chr4 (24-72)||(3461198-3461246)
chr4 (24-72)||(11652448-11652496)
chr4 (24-72)||(26984723-26984771)
chr4 (24-72)||(26998796-26998844)
chr4 (24-72)||(49108689-49108737)
chr4 (24-72)||(50077255-50077303)
chr4 (23-72)||(48205834-48205883)
chr4 (17-73)||(6431959-6432015)
[»] chr2 (17 HSPs)
chr2 (17-72)||(8973315-8973370)
chr2 (17-72)||(9023450-9023505)
chr2 (4-72)||(2841050-2841121)
chr2 (24-72)||(8979325-8979373)
chr2 (24-72)||(9008024-9008072)
chr2 (24-72)||(9026789-9026837)
chr2 (24-72)||(30732011-30732059)
chr2 (24-72)||(30733991-30734039)
chr2 (24-72)||(32918083-32918131)
chr2 (24-72)||(43850052-43850100)
chr2 (17-72)||(8984696-8984751)
chr2 (24-64)||(9020858-9020898)
chr2 (24-72)||(9032056-9032104)
chr2 (24-72)||(19232455-19232503)
chr2 (24-62)||(9030411-9030449)
chr2 (24-72)||(9016496-9016544)
chr2 (17-72)||(6471758-6471812)
[»] chr1 (19 HSPs)
chr1 (17-72)||(14667160-14667215)
chr1 (24-72)||(14652528-14652576)
chr1 (24-72)||(14654396-14654444)
chr1 (24-72)||(14662319-14662367)
chr1 (24-72)||(14664187-14664235)
chr1 (24-72)||(14669765-14669813)
chr1 (24-72)||(14674484-14674532)
chr1 (24-72)||(14676635-14676683)
chr1 (24-72)||(14679862-14679910)
chr1 (24-72)||(14681602-14681650)
chr1 (24-72)||(14683753-14683801)
chr1 (24-72)||(14706091-14706139)
chr1 (24-72)||(14708581-14708629)
chr1 (24-72)||(14716294-14716342)
chr1 (24-72)||(28366255-28366303)
chr1 (24-72)||(33988073-33988121)
chr1 (24-72)||(38175586-38175634)
chr1 (24-72)||(11872537-11872585)
chr1 (2-69)||(37422175-37422245)
[»] chr6 (4 HSPs)
chr6 (24-72)||(10791708-10791756)
chr6 (24-72)||(10795946-10795994)
chr6 (24-72)||(30521245-30521293)
chr6 (24-63)||(8875701-8875740)
[»] chr3 (1 HSPs)
chr3 (27-72)||(15758562-15758607)


Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 3 - 237
Target Start/End: Complemental strand, 27134586 - 27134347
Alignment:
Q  3 gaccacatatcagata---aaccaataagaacagatactagacttgatcttagccaaaaggccgaaaaaggtaggatgtgtgtatgtatgtttgtatatg 99  Q
    ||||||||||||||||   ||||||||||||||||||||||| ||||||||||  |||||||||||||||||| ||||||||||||||||||||||||||    
T  27134586 gaccacatatcagatattaaaccaataagaacagatactagatttgatcttagtgaaaaggccgaaaaaggtatgatgtgtgtatgtatgtttgtatatg 27134487  T
Q  100 aaattgaaaaaagagggctgagagtgagaga--tatacgtgctacagtcaaaatcagctttaatctggtagggtaatggaacatcacacttctcagggag 197  Q
    ||||||||||||||||| |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27134486 aaattgaaaaaagagggttgagagtgagagagatatacgtgctacagtcaaaatcagctttaatctggtagggtaatggaacatcacacttctcagggag 27134387  T
Q  198 ggcagcaacagtatcgggattgactccaggtatgcgtaac 237  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  27134386 ggcagcaacagtatcaggattgactccaggtatgcgtaac 27134347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 173
Target Start/End: Complemental strand, 27158385 - 27158306
Alignment:
Q  94 tatatgaaattgaaaaaagagggctgagagtgagagatatacgtgctacagtcaaaatcagctttaatctggtagggtaa 173  Q
    ||||||||||||||||||||||| ||| |||||||||||||| ||  |||||  | |||||   ||||||||||||||||    
T  27158385 tatatgaaattgaaaaaagagggatgatagtgagagatatacttgtcacagttcatatcaggggtaatctggtagggtaa 27158306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 135
Target Start/End: Complemental strand, 27147545 - 27147504
Alignment:
Q  94 tatatgaaattgaaaaaagagggctgagagtgagagatatac 135  Q
    ||||||||||||||||||||||| ||| ||||||||||||||    
T  27147545 tatatgaaattgaaaaaagagggatgatagtgagagatatac 27147504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 41841183 - 41841256
Alignment:
Q  2 ggaccacatatcagata---aaccaataagaacagatactagacttgatcttagccaaaaggccgaaaaaggta 72  Q
    |||||||||||||||||   |||  |||||||||||||||| |||||||||||||||||||||||| |||||||    
T  41841183 ggaccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggta 41841256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 37679806 - 37679758
Alignment:
Q  24 ataagaacagatactagacttgatcttagccaaaaggccgaaaaaggta 72  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||    
T  37679806 ataagaacagatactacacttgatcttagccaaaaggccgagaaaggta 37679758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 40054363 - 40054315
Alignment:
Q  24 ataagaacagatactagacttgatcttagccaaaaggccgaaaaaggta 72  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||    
T  40054363 ataagaacagatactacacttgatcttagccaaaaggccgagaaaggta 40054315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 44879034 - 44878986
Alignment:
Q  24 ataagaacagatactagacttgatcttagccaaaaggccgaaaaaggta 72  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||    
T  44879034 ataagaacagatactacacttgatcttagccaaaaggccgagaaaggta 44878986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 44880887 - 44880935
Alignment:
Q  24 ataagaacagatactagacttgatcttagccaaaaggccgaaaaaggta 72  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||    
T  44880887 ataagaacagatactacacttgatcttagccaaaaggccgagaaaggta 44880935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 81
Target Start/End: Complemental strand, 37682108 - 37682051
Alignment:
Q  24 ataagaacagatactagacttgatcttagccaaaaggccgaaaaaggtaggatgtgtg 81  Q
    |||||||||||||||| |||||||||||||||||||||||| ||| ||| ||| ||||    
T  37682108 ataagaacagatactacacttgatcttagccaaaaggccgagaaatgtatgatttgtg 37682051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 10944455 - 10944503
Alignment:
Q  24 ataagaacagatactagacttgatcttagccaaaaggccgaaaaaggta 72  Q
    |||||||||||||||| |||||||||||||||||||| ||| |||||||    
T  10944455 ataagaacagatactacacttgatcttagccaaaaggtcgagaaaggta 10944503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 42220880 - 42220945
Alignment:
Q  5 ccacatatcagata---aaccaataagaacagatactagacttgatcttagccaaaaggccgaaaaa 68  Q
    ||||||||||||||   ||| |||||||| |||||||| ||||||||||||||||||| ||||||||    
T  42220880 ccacatatcagatattaaactaataagaa-agatactacacttgatcttagccaaaagaccgaaaaa 42220945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 58
Target Start/End: Complemental strand, 44582904 - 44582870
Alignment:
Q  24 ataagaacagatactagacttgatcttagccaaaa 58  Q
    |||||||||||||||| ||||||||||||||||||    
T  44582904 ataagaacagatactacacttgatcttagccaaaa 44582870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 42872514 - 42872554
Alignment:
Q  32 agatactagacttgatcttagccaaaaggccgaaaaaggta 72  Q
    |||||||| |||| ||||||||||||||||||| |||||||    
T  42872514 agatactacacttaatcttagccaaaaggccgagaaaggta 42872554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 1716483 - 1716556
Alignment:
Q  2 ggaccacatatcagata---aaccaataagaacagatactagacttgatcttagccaaaaggccgaaaaaggta 72  Q
    |||||||||||||||||   |||  |||||||||||||||| |||||||||||||||||||||||| |||||||    
T  1716483 ggaccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggta 1716556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 3643691 - 3643643
Alignment:
Q  24 ataagaacagatactagacttgatcttagccaaaaggccgaaaaaggta 72  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||    
T  3643691 ataagaacagatactacacttgatcttagccaaaaggccgagaaaggta 3643643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 7525019 - 7524971
Alignment:
Q  24 ataagaacagatactagacttgatcttagccaaaaggccgaaaaaggta 72  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||    
T  7525019 ataagaacagatactacacttgatcttagccaaaaggccgagaaaggta 7524971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 49106560 - 49106633
Alignment:
Q  2 ggaccacatatcagata---aaccaataagaacagatactagacttgatcttagccaaaaggccgaaaaaggta 72  Q
    |||||||||||||||||   |||  |||||||||||||||| |||||||||||||||||||||||| |||||||    
T  49106560 ggaccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggta 49106633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 3461198 - 3461246
Alignment:
Q  24 ataagaacagatactagacttgatcttagccaaaaggccgaaaaaggta 72  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||    
T  3461198 ataagaacagatactacacttgatcttagccaaaaggccgagaaaggta 3461246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 11652448 - 11652496
Alignment:
Q  24 ataagaacagatactagacttgatcttagccaaaaggccgaaaaaggta 72  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||    
T  11652448 ataagaacagatactacacttgatcttagccaaaaggccgagaaaggta 11652496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 26984723 - 26984771
Alignment:
Q  24 ataagaacagatactagacttgatcttagccaaaaggccgaaaaaggta 72  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||    
T  26984723 ataagaacagatactacacttgatcttagccaaaaggccgagaaaggta 26984771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 26998796 - 26998844
Alignment:
Q  24 ataagaacagatactagacttgatcttagccaaaaggccgaaaaaggta 72  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||    
T  26998796 ataagaacagatactacacttgatcttagccaaaaggccgagaaaggta 26998844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 49108689 - 49108737
Alignment:
Q  24 ataagaacagatactagacttgatcttagccaaaaggccgaaaaaggta 72  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||    
T  49108689 ataagaacagatactacacttgatcttagccaaaaggccgagaaaggta 49108737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 50077255 - 50077303
Alignment:
Q  24 ataagaacagatactagacttgatcttagccaaaaggccgaaaaaggta 72  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||    
T  50077255 ataagaacagatactacacttgatcttagccaaaaggccgagaaaggta 50077303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 72
Target Start/End: Complemental strand, 48205883 - 48205834
Alignment:
Q  23 aataagaacagatactagacttgatcttagccaaaaggccgaaaaaggta 72  Q
    ||||||||||||||||| |||| |||||||| |||||||||| |||||||    
T  48205883 aataagaacagatactacacttaatcttagctaaaaggccgagaaaggta 48205834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 6431959 - 6432015
Alignment:
Q  17 taaaccaataagaacagatactagacttgatcttagccaaaaggccgaaaaaggtag 73  Q
    ||||| |||||||| |||||||| || ||||||||||||| ||||||| ||| ||||    
T  6431959 taaactaataagaagagatactaaacctgatcttagccaataggccgagaaaagtag 6432015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 72
Target Start/End: Complemental strand, 8973370 - 8973315
Alignment:
Q  17 taaaccaataagaacagatactagacttgatcttagccaaaaggccgaaaaaggta 72  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||||| |||||||    
T  8973370 taaactaataagaacagatactacacttgatcttagccaaaaggccgagaaaggta 8973315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 72
Target Start/End: Complemental strand, 9023505 - 9023450
Alignment:
Q  17 taaaccaataagaacagatactagacttgatcttagccaaaaggccgaaaaaggta 72  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||||| |||||||    
T  9023505 taaactaataagaacagatactacacttgatcttagccaaaaggccgagaaaggta 9023450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 2841050 - 2841121
Alignment:
Q  4 accacatatcagata---aaccaataagaacagatactagacttgatcttagccaaaaggccgaaaaaggta 72  Q
    |||||||||||||||   |||  |||||||||||||||| |||||||||||||||||||||||| |||||||    
T  2841050 accacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggta 2841121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 8979373 - 8979325
Alignment:
Q  24 ataagaacagatactagacttgatcttagccaaaaggccgaaaaaggta 72  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||    
T  8979373 ataagaacagatactacacttgatcttagccaaaaggccgagaaaggta 8979325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 9008072 - 9008024
Alignment:
Q  24 ataagaacagatactagacttgatcttagccaaaaggccgaaaaaggta 72  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||    
T  9008072 ataagaacagatactacacttgatcttagccaaaaggccgagaaaggta 9008024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 9026837 - 9026789
Alignment:
Q  24 ataagaacagatactagacttgatcttagccaaaaggccgaaaaaggta 72  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||    
T  9026837 ataagaacagatactacacttgatcttagccaaaaggccgagaaaggta 9026789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 30732059 - 30732011
Alignment:
Q  24 ataagaacagatactagacttgatcttagccaaaaggccgaaaaaggta 72  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||    
T  30732059 ataagaacagatactacacttgatcttagccaaaaggccgagaaaggta 30732011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 30734039 - 30733991
Alignment:
Q  24 ataagaacagatactagacttgatcttagccaaaaggccgaaaaaggta 72  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||    
T  30734039 ataagaacagatactacacttgatcttagccaaaaggccgagaaaggta 30733991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 32918131 - 32918083
Alignment:
Q  24 ataagaacagatactagacttgatcttagccaaaaggccgaaaaaggta 72  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||    
T  32918131 ataagaacagatactacacttgatcttagccaaaaggccgagaaaggta 32918083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 43850100 - 43850052
Alignment:
Q  24 ataagaacagatactagacttgatcttagccaaaaggccgaaaaaggta 72  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||    
T  43850100 ataagaacagatactacacttgatcttagccaaaaggccgagaaaggta 43850052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 17 - 72
Target Start/End: Complemental strand, 8984751 - 8984696
Alignment:
Q  17 taaaccaataagaacagatactagacttgatcttagccaaaaggccgaaaaaggta 72  Q
    ||||| |||||||||| |||||| |||||||||||||||||||||||| |||||||    
T  8984751 taaactaataagaacaaatactacacttgatcttagccaaaaggccgagaaaggta 8984696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 9020898 - 9020858
Alignment:
Q  24 ataagaacagatactagacttgatcttagccaaaaggccga 64  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  9020898 ataagaacagatactacacttgatcttagccaaaaggccga 9020858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 9032104 - 9032056
Alignment:
Q  24 ataagaacagatactagacttgatcttagccaaaaggccgaaaaaggta 72  Q
    |||||||||||||||| ||||||||||| |||||||||||| |||||||    
T  9032104 ataagaacagatactacacttgatcttaaccaaaaggccgagaaaggta 9032056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 19232455 - 19232503
Alignment:
Q  24 ataagaacagatactagacttgatcttagccaaaaggccgaaaaaggta 72  Q
    ||||||||||||| || |||||||||||||||||||||||| |||||||    
T  19232455 ataagaacagatattacacttgatcttagccaaaaggccgagaaaggta 19232503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 24 - 62
Target Start/End: Complemental strand, 9030449 - 9030411
Alignment:
Q  24 ataagaacagatactagacttgatcttagccaaaaggcc 62  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  9030449 ataagaacagatactacacttgatcttagccaaaaggcc 9030411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 9016544 - 9016496
Alignment:
Q  24 ataagaacagatactagacttgatcttagccaaaaggccgaaaaaggta 72  Q
    |||||||||||||||| | |||||||||||||||||| |||| ||||||    
T  9016544 ataagaacagatactacatttgatcttagccaaaaggtcgaataaggta 9016496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 6471758 - 6471812
Alignment:
Q  17 taaaccaataagaacagatactagacttgatcttagccaaaaggccgaaaaaggta 72  Q
    ||||| |||||||||| |||||| |||| ||||||||||||||| |||||||||||    
T  6471758 taaactaataagaacatatactacactt-atcttagccaaaaggtcgaaaaaggta 6471812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 14667160 - 14667215
Alignment:
Q  17 taaaccaataagaacagatactagacttgatcttagccaaaaggccgaaaaaggta 72  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||||| |||||||    
T  14667160 taaactaataagaacagatactacacttgatcttagccaaaaggccgagaaaggta 14667215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 14652576 - 14652528
Alignment:
Q  24 ataagaacagatactagacttgatcttagccaaaaggccgaaaaaggta 72  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||    
T  14652576 ataagaacagatactacacttgatcttagccaaaaggccgagaaaggta 14652528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 14654396 - 14654444
Alignment:
Q  24 ataagaacagatactagacttgatcttagccaaaaggccgaaaaaggta 72  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||    
T  14654396 ataagaacagatactacacttgatcttagccaaaaggccgagaaaggta 14654444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 14662367 - 14662319
Alignment:
Q  24 ataagaacagatactagacttgatcttagccaaaaggccgaaaaaggta 72  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||    
T  14662367 ataagaacagatactacacttgatcttagccaaaaggccgagaaaggta 14662319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 14664187 - 14664235
Alignment:
Q  24 ataagaacagatactagacttgatcttagccaaaaggccgaaaaaggta 72  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||    
T  14664187 ataagaacagatactacacttgatcttagccaaaaggccgagaaaggta 14664235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 14669765 - 14669813
Alignment:
Q  24 ataagaacagatactagacttgatcttagccaaaaggccgaaaaaggta 72  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||    
T  14669765 ataagaacagatactacacttgatcttagccaaaaggccgagaaaggta 14669813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 14674532 - 14674484
Alignment:
Q  24 ataagaacagatactagacttgatcttagccaaaaggccgaaaaaggta 72  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||    
T  14674532 ataagaacagatactacacttgatcttagccaaaaggccgagaaaggta 14674484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 14676683 - 14676635
Alignment:
Q  24 ataagaacagatactagacttgatcttagccaaaaggccgaaaaaggta 72  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||    
T  14676683 ataagaacagatactacacttgatcttagccaaaaggccgagaaaggta 14676635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 14679910 - 14679862
Alignment:
Q  24 ataagaacagatactagacttgatcttagccaaaaggccgaaaaaggta 72  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||    
T  14679910 ataagaacagatactacacttgatcttagccaaaaggccgagaaaggta 14679862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 14681650 - 14681602
Alignment:
Q  24 ataagaacagatactagacttgatcttagccaaaaggccgaaaaaggta 72  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||    
T  14681650 ataagaacagatactacacttgatcttagccaaaaggccgagaaaggta 14681602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 14683801 - 14683753
Alignment:
Q  24 ataagaacagatactagacttgatcttagccaaaaggccgaaaaaggta 72  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||    
T  14683801 ataagaacagatactacacttgatcttagccaaaaggccgagaaaggta 14683753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 14706139 - 14706091
Alignment:
Q  24 ataagaacagatactagacttgatcttagccaaaaggccgaaaaaggta 72  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||    
T  14706139 ataagaacagatactacacttgatcttagccaaaaggccgagaaaggta 14706091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 14708629 - 14708581
Alignment:
Q  24 ataagaacagatactagacttgatcttagccaaaaggccgaaaaaggta 72  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||    
T  14708629 ataagaacagatactacacttgatcttagccaaaaggccgagaaaggta 14708581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 14716342 - 14716294
Alignment:
Q  24 ataagaacagatactagacttgatcttagccaaaaggccgaaaaaggta 72  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||    
T  14716342 ataagaacagatactacacttgatcttagccaaaaggccgagaaaggta 14716294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 28366255 - 28366303
Alignment:
Q  24 ataagaacagatactagacttgatcttagccaaaaggccgaaaaaggta 72  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||    
T  28366255 ataagaacagatactacacttgatcttagccaaaaggccgagaaaggta 28366303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 33988121 - 33988073
Alignment:
Q  24 ataagaacagatactagacttgatcttagccaaaaggccgaaaaaggta 72  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||    
T  33988121 ataagaacagatactacacttgatcttagccaaaaggccgagaaaggta 33988073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 38175586 - 38175634
Alignment:
Q  24 ataagaacagatactagacttgatcttagccaaaaggccgaaaaaggta 72  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||    
T  38175586 ataagaacagatactacacttgatcttagccaaaaggccgagaaaggta 38175634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 11872537 - 11872585
Alignment:
Q  24 ataagaacagatactagacttgatcttagccaaaaggccgaaaaaggta 72  Q
    ||||||||||||| || |||||||||||| ||||||||||| |||||||    
T  11872537 ataagaacagatagtacacttgatcttagtcaaaaggccgagaaaggta 11872585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 69
Target Start/End: Complemental strand, 37422245 - 37422175
Alignment:
Q  2 ggaccacatatcagata---aaccaataagaacagatactagacttgatcttagccaaaaggccgaaaaag 69  Q
    |||||||||||||||||   |||  ||||||||| || ||| |||||||||||||||||||||||| ||||    
T  37422245 ggaccacatatcagatattaaactgataagaacatatgctacacttgatcttagccaaaaggccgagaaag 37422175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 10791708 - 10791756
Alignment:
Q  24 ataagaacagatactagacttgatcttagccaaaaggccgaaaaaggta 72  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||    
T  10791708 ataagaacagatactacacttgatcttagccaaaaggccgagaaaggta 10791756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 10795946 - 10795994
Alignment:
Q  24 ataagaacagatactagacttgatcttagccaaaaggccgaaaaaggta 72  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||    
T  10795946 ataagaacagatactacacttgatcttagccaaaaggccgagaaaggta 10795994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 30521293 - 30521245
Alignment:
Q  24 ataagaacagatactagacttgatcttagccaaaaggccgaaaaaggta 72  Q
    |||||||||||||||| ||||||||| |||||||||| ||| |||||||    
T  30521293 ataagaacagatactacacttgatctcagccaaaaggtcgagaaaggta 30521245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 63
Target Start/End: Complemental strand, 8875740 - 8875701
Alignment:
Q  24 ataagaacagatactagacttgatcttagccaaaaggccg 63  Q
    ||||||||||||| || |||||||||||||||||||||||    
T  8875740 ataagaacagatattacacttgatcttagccaaaaggccg 8875701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 72
Target Start/End: Original strand, 15758562 - 15758607
Alignment:
Q  27 agaacagatactagacttgatcttagccaaaaggccgaaaaaggta 72  Q
    |||||||||| || ||||||||||||||||||||| || |||||||    
T  15758562 agaacagatattacacttgatcttagccaaaaggctgagaaaggta 15758607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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