View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20179_low_85 (Length: 235)

Name: NF20179_low_85
Description: NF20179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20179_low_85
NF20179_low_85
[»] chr7 (13 HSPs)
chr7 (20-215)||(3617394-3617589)
chr7 (20-215)||(29058087-29058282)
chr7 (20-215)||(29071315-29071510)
chr7 (20-215)||(28956864-28957059)
chr7 (20-215)||(29068853-29069048)
chr7 (20-215)||(3619062-3619257)
chr7 (20-215)||(29078048-29078243)
chr7 (20-215)||(29110799-29110994)
chr7 (20-206)||(29073145-29073331)
chr7 (20-206)||(29116253-29116439)
chr7 (20-206)||(29102108-29102294)
chr7 (64-212)||(29066811-29066959)
chr7 (73-200)||(29098390-29098517)
[»] chr4 (3 HSPs)
chr4 (20-215)||(11851662-11851857)
chr4 (20-215)||(11854376-11854571)
chr4 (20-206)||(11849837-11850023)
[»] chr3 (1 HSPs)
chr3 (24-215)||(24241017-24241202)
[»] chr8 (1 HSPs)
chr8 (60-146)||(11654929-11655015)


Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 20 - 215
Target Start/End: Original strand, 3617394 - 3617589
Alignment:
Q  20 catctgaccatgtaatgtctaggccaccccattgatcttgaggcacacccaaggctttccacacagccttagaagcatcaacaatgttgtttggacaagg 119  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3617394 catctgaccatgtaatatctaggccaccccattgatcttgaggcacacccaaggctttccacacagccttagaagcatcaacaatgttgtttggacaagg 3617493  T
Q  120 aggttggtaatcatgttcttcatcacatcccattgttgagtcacactcatcaaccaccgtggccactacactttttccattggcacttatggtaat 215  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3617494 aggttggtaatcatgttcttcatcacatcccattgtagagtcacactcatcaaccaccgtggccactacactttttccattggcacttatggtaat 3617589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 20 - 215
Target Start/End: Original strand, 29058087 - 29058282
Alignment:
Q  20 catctgaccatgtaatgtctaggccaccccattgatcttgaggcacacccaaggctttccacacagccttagaagcatcaacaatgttgtttggacaagg 119  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  29058087 catctgaccatgtaatgtcaaggccaccccattgatcttgaggcacacccaaggctttccacacagccttggaagcatcaacaatgttgtttgggcaagg 29058186  T
Q  120 aggttggtaatcatgttcttcatcacatcccattgttgagtcacactcatcaaccaccgtggccactacactttttccattggcacttatggtaat 215  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29058187 aggttgataatcatgttcttcatcacatcccattgttgagtcacactcatcaaccaccgtggccactacactttttccattggcacttatggtaat 29058282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 20 - 215
Target Start/End: Original strand, 29071315 - 29071510
Alignment:
Q  20 catctgaccatgtaatgtctaggccaccccattgatcttgaggcacacccaaggctttccacacagccttagaagcatcaacaatgttgtttggacaagg 119  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  29071315 catctgaccatgtaatgtcaaggccaccccattgatcttgaggcacacccaaggctttccacacagccttggaagcatcaacaatgttgtttggacaagg 29071414  T
Q  120 aggttggtaatcatgttcttcatcacatcccattgttgagtcacactcatcaaccaccgtggccactacactttttccattggcacttatggtaat 215  Q
    ||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  29071415 aggttggtaatcatgttcttcatcacatcccatcgtagagtcacactcatcaaccacagtggccactacacttcttccattggcacttatggtaat 29071510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 20 - 215
Target Start/End: Complemental strand, 28957059 - 28956864
Alignment:
Q  20 catctgaccatgtaatgtctaggccaccccattgatcttgaggcacacccaaggctttccacacagccttagaagcatcaacaatgttgtttggacaagg 119  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||| || |||| |||||||||||| |||||||||||||||||||||||||||||    
T  28957059 catctgaccatgtaatgtcaaggccaccccattgatcttgaggcacacctaaagcttcccacacagccttggaagcatcaacaatgttgtttggacaagg 28956960  T
Q  120 aggttggtaatcatgttcttcatcacatcccattgttgagtcacactcatcaaccaccgtggccactacactttttccattggcacttatggtaat 215  Q
    ||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||| ||||||| |||||||| ||||| ||||| || |||||    
T  28956959 aggttggtaatcatgttcttcatcacatccctttgtggagtcacactcatcaacaaccatggccaccacacttttcccattcgcactaattgtaat 28956864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 20 - 215
Target Start/End: Original strand, 29068853 - 29069048
Alignment:
Q  20 catctgaccatgtaatgtctaggccaccccattgatcttgaggcacacccaaggctttccacacagccttagaagcatcaacaatgttgtttggacaagg 119  Q
    ||||||||||||||||||| |||||||||||||| |||| |||||||   || ||||||||||||||||| ||||||||||||||||| |||||||||||    
T  29068853 catctgaccatgtaatgtcaaggccaccccattgctctttaggcacatttaaagctttccacacagccttggaagcatcaacaatgttatttggacaagg 29068952  T
Q  120 aggttggtaatcatgttcttcatcacatcccattgttgagtcacactcatcaaccaccgtggccactacactttttccattggcacttatggtaat 215  Q
    ||||||||||||||||| ||||||||||||| || | ||||||||||||||||| ||| ||||||| |||||||||||||| ||||||||||||||    
T  29068953 aggttggtaatcatgttgttcatcacatccctttctggagtcacactcatcaacaaccatggccaccacactttttccattcgcacttatggtaat 29069048  T

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Target: chr7; HSP #6
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 20 - 215
Target Start/End: Complemental strand, 3619257 - 3619062
Alignment:
Q  20 catctgaccatgtaatgtctaggccaccccattgatcttgaggcacacccaaggctttccacacagccttagaagcatcaacaatgttgtttggacaagg 119  Q
    |||| ||||||||||| || |  |||||||||||||| ||||| ||| ||||||||||||||||||| ||||| |||||||| ||||||||   ||||||    
T  3619257 catcagaccatgtaatatccaatccaccccattgatcatgaggaacatccaaggctttccacacagctttagaggcatcaactatgttgttgttacaagg 3619158  T
Q  120 aggttggtaatcatgttcttcatcacatcccattgttgagtcacactcatcaaccaccgtggccactacactttttccattggcacttatggtaat 215  Q
    |||||||||||||||||||| |||||||||||| || ||||| ||||||||||| |||||||| || |||||| ||||||| || || ||||||||    
T  3619157 aggttggtaatcatgttctttatcacatcccatcgtagagtcgcactcatcaacaaccgtggcaaccacacttcttccattcgcgctgatggtaat 3619062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 20 - 215
Target Start/End: Original strand, 29078048 - 29078243
Alignment:
Q  20 catctgaccatgtaatgtctaggccaccccattgatcttgaggcacacccaaggctttccacacagccttagaagcatcaacaatgttgtttggacaagg 119  Q
    ||||||||||||||||||| |||||||||||||| |||| ||||||||| || |||||||||||||| || |||||||||||||||||||||| ||||||    
T  29078048 catctgaccatgtaatgtcaaggccaccccattgttctttaggcacacctaaagctttccacacagctttggaagcatcaacaatgttgtttgtacaagg 29078147  T
Q  120 aggttggtaatcatgttcttcatcacatcccattgttgagtcacactcatcaaccaccgtggccactacactttttccattggcacttatggtaat 215  Q
     |||||||| ||||| | ||||||||||||| || | || || ||||| || || ||| ||||||| ||| || ||||||| ||||| || |||||    
T  29078148 tggttggtagtcatgctgttcatcacatccctttctagaatcgcactcgtcgacaaccatggccacgacatttcttccattagcactgattgtaat 29078243  T

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Target: chr7; HSP #8
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 20 - 215
Target Start/End: Original strand, 29110799 - 29110994
Alignment:
Q  20 catctgaccatgtaatgtctaggccaccccattgatcttgaggcacacccaaggctttccacacagccttagaagcatcaacaatgttgtttggacaagg 119  Q
    |||||||||||||||| || || ||||||||||| |||| ||||||||| || |||||||||||||| || |||||||||||||||||||||||||| ||    
T  29110799 catctgaccatgtaatatcaagaccaccccattgttctttaggcacacctaaagctttccacacagctttggaagcatcaacaatgttgtttggacacgg 29110898  T
Q  120 aggttggtaatcatgttcttcatcacatcccattgttgagtcacactcatcaaccaccgtggccactacactttttccattggcacttatggtaat 215  Q
     |||||||| ||||| | ||||||||||||| || | || || ||||| ||||| ||| ||||||| ||| || ||||||| ||||| || |||||    
T  29110899 tggttggtagtcatgctgttcatcacatccctttctagaatcgcactcgtcaacaaccatggccacgacatttcttccattagcactgattgtaat 29110994  T

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Target: chr7; HSP #9
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 20 - 206
Target Start/End: Complemental strand, 29073331 - 29073145
Alignment:
Q  20 catctgaccatgtaatgtctaggccaccccattgatcttgaggcacacccaaggctttccacacagccttagaagcatcaacaatgttgtttggacaagg 119  Q
    |||| |||||||||||||| |  |||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||| ||||||||   ||||||    
T  29073331 catcggaccatgtaatgtccaatccaccccattgatcatgaggcacacccaaggctttccacacagctttagaggcatcaactatgttgttgttacaagg 29073232  T
Q  120 aggttggtaatcatgttcttcatcacatcccattgttgagtcacactcatcaaccaccgtggccactacactttttccattggcact 206  Q
    |||||| ||||||||||||| ||| |||||   | | || |||||||||||||| ||  ||||||| |||||| |||| || |||||    
T  29073231 aggttgataatcatgttctttatcgcatcctgctctcgaatcacactcatcaacaactttggccaccacacttcttccgttcgcact 29073145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 20 - 206
Target Start/End: Complemental strand, 29116439 - 29116253
Alignment:
Q  20 catctgaccatgtaatgtctaggccaccccattgatcttgaggcacacccaaggctttccacacagccttagaagcatcaacaatgttgtttggacaagg 119  Q
    |||| |||||||||||||| |  |||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||| ||||||||   ||||||    
T  29116439 catcagaccatgtaatgtccaatccaccccattgatcatgaggcacacccaaggctttccacacagctttagaggcatcaactatgttgttgttacaagg 29116340  T
Q  120 aggttggtaatcatgttcttcatcacatcccattgttgagtcacactcatcaaccaccgtggccactacactttttccattggcact 206  Q
    |||||| ||||||||||||| ||| |||||   | | || |||||||||||||| ||  ||||||| |||||| |||| || |||||    
T  29116339 aggttgataatcatgttctttatcgcatcctgctctcgaatcacactcatcaacaactttggccaccacacttcttccgttcgcact 29116253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 20 - 206
Target Start/End: Complemental strand, 29102294 - 29102108
Alignment:
Q  20 catctgaccatgtaatgtctaggccaccccattgatcttgaggcacacccaaggctttccacacagccttagaagcatcaacaatgttgtttggacaagg 119  Q
    |||| |||||||||||||| |  |||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||| ||||||||   ||||||    
T  29102294 catcagaccatgtaatgtccaatccaccccattgatcatgaggcacacccaaggctttccacacagctttagaggcatcaactatgttgttgttacaagg 29102195  T
Q  120 aggttggtaatcatgttcttcatcacatcccattgttgagtcacactcatcaaccaccgtggccactacactttttccattggcact 206  Q
    |||||| ||||||||||||| ||| |||||   | | || |||||||||||||| ||  ||||||| || ||| |||| || |||||    
T  29102194 aggttgataatcatgttctttatcgcatcctgctctcgaatcacactcatcaacaactttggccaccacgcttcttccgttcgcact 29102108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 64 - 212
Target Start/End: Complemental strand, 29066959 - 29066811
Alignment:
Q  64 acacccaaggctttccacacagccttagaagcatcaacaatgttgtttggacaaggaggttggtaatcatgttcttcatcacatcccattgttgagtcac 163  Q
    ||||| |||||||||||||||||| | ||||||||||||||||| || | ||| |||||||| || ||||||||| ||||||| ||| ||| ||||||||    
T  29066959 acacctaaggctttccacacagccattgaagcatcaacaatgttattggcacatggaggttgatactcatgttctgcatcacacccctttgatgagtcac 29066860  T
Q  164 actcatcaaccaccgtggccactacactttttccattggcacttatggt 212  Q
    | |||||||| ||| | || || |||||||  |||||  ||||||||||    
T  29066859 attcatcaactaccattgcaaccacactttgaccatttccacttatggt 29066811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 73 - 200
Target Start/End: Complemental strand, 29098517 - 29098390
Alignment:
Q  73 gctttccacacagccttagaagcatcaacaatgttgtttggacaaggaggttggtaatcatgttcttcatcacatcccattgttgagtcacactcatcaa 172  Q
    |||| ||| ||| |||| || |||||||| ||||||||  |||||||||||||||||||||| |||| |||||||| |||||| ||||||| |||||| |    
T  29098517 gcttcccatacaaccttggaggcatcaactatgttgttgcgacaaggaggttggtaatcatgatctttatcacatctcattgtagagtcacgctcatcga 29098418  T
Q  173 ccaccgtggccactacactttttccatt 200  Q
    | ||| ||||||| |||||| |||||||    
T  29098417 ctaccatggccaccacacttcttccatt 29098390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 168; Significance: 4e-90; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 20 - 215
Target Start/End: Complemental strand, 11851857 - 11851662
Alignment:
Q  20 catctgaccatgtaatgtctaggccaccccattgatcttgaggcacacccaaggctttccacacagccttagaagcatcaacaatgttgtttggacaagg 119  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  11851857 catctgaccatgtaatgtcaaggccaccccattgatcttgaggcacacccaaggctttccacacagccttggaagcatcaacaatgttgtttggacaagg 11851758  T
Q  120 aggttggtaatcatgttcttcatcacatcccattgttgagtcacactcatcaaccaccgtggccactacactttttccattggcacttatggtaat 215  Q
    ||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||    
T  11851757 aggttggtaatcatgttcttcatcacatcccatcgtagagtcacactcatcaaccacagtggccaccacacttcttccattggcacttatggtaat 11851662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 20 - 215
Target Start/End: Complemental strand, 11854571 - 11854376
Alignment:
Q  20 catctgaccatgtaatgtctaggccaccccattgatcttgaggcacacccaaggctttccacacagccttagaagcatcaacaatgttgtttggacaagg 119  Q
    ||||||||||||||||||| |||||||||||||| |||| |||||||   || ||||||||||||||||| ||||||||||||||||| |||||||||||    
T  11854571 catctgaccatgtaatgtcaaggccaccccattgctctttaggcacatttaaagctttccacacagccttggaagcatcaacaatgttatttggacaagg 11854472  T
Q  120 aggttggtaatcatgttcttcatcacatcccattgttgagtcacactcatcaaccaccgtggccactacactttttccattggcacttatggtaat 215  Q
    ||||||||||||||||| ||||||||||||| || | ||||||||||||||||| ||| ||||||| |||||||||||||| ||||||||||||||    
T  11854471 aggttggtaatcatgttgttcatcacatccctttctggagtcacactcatcaacaaccatggccaccacactttttccattcgcacttatggtaat 11854376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 20 - 206
Target Start/End: Original strand, 11849837 - 11850023
Alignment:
Q  20 catctgaccatgtaatgtctaggccaccccattgatcttgaggcacacccaaggctttccacacagccttagaagcatcaacaatgttgtttggacaagg 119  Q
    |||| |||||||||||||| |  |||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||| ||||||||   ||||||    
T  11849837 catcagaccatgtaatgtccaatccaccccattgatcatgaggcacacccaaggctttccacacagctttagaggcatcaactatgttgttgttacaagg 11849936  T
Q  120 aggttggtaatcatgttcttcatcacatcccattgttgagtcacactcatcaaccaccgtggccactacactttttccattggcact 206  Q
    |||||| ||||||||||||| ||| |||||   | | || |||||||||||||| ||  ||||||| |||||| |||| || |||||    
T  11849937 aggttgataatcatgttctttatcgcatcctgctctcgaatcacactcatcaacaactttggccaccacacttcttccgttcgcact 11850023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 24 - 215
Target Start/End: Original strand, 24241017 - 24241202
Alignment:
Q  24 tgaccatgtaatgtctaggccaccccattgatcttgaggcacacccaaggctttccacacagccttagaagcatcaacaatgttgtttggacaaggaggt 123  Q
    |||||||||||| || ||  |||||||||  || ||||||||||| ||||||||||| ||| |||| ||||| |||||||||||      |||||||||     
T  24241017 tgaccatgtaatttcaagttcaccccatttgtcatgaggcacacctaaggctttccatacaaccttggaagcctcaacaatgtt------acaaggaggc 24241110  T
Q  124 tggtaatcatgttcttcatcacatcccattgttgagtcacactcatcaaccaccgtggccactacactttttccattggcacttatggtaat 215  Q
    ||||||||||| ||||||||||||||||||||  |||||||||||||||| | | ||||||| |||||| | |||||||| || ||||||||    
T  24241111 tggtaatcatgctcttcatcacatcccattgtgaagtcacactcatcaacaaacatggccaccacacttctaccattggcgctgatggtaat 24241202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 60 - 146
Target Start/End: Complemental strand, 11655015 - 11654929
Alignment:
Q  60 aggcacacccaaggctttccacacagccttagaagcatcaacaatgttgtttggacaaggaggttggtaatcatgttcttcatcaca 146  Q
    |||||||||||| || ||||| |||||   ||||||||||||||| ||||||| ||||||||||||  ||||||||||  |||||||    
T  11655015 aggcacacccaaagccttccaaacagcagcagaagcatcaacaatattgtttgaacaaggaggttgaaaatcatgttcagcatcaca 11654929  T

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