View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20179_low_86 (Length: 230)

Name: NF20179_low_86
Description: NF20179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20179_low_86
NF20179_low_86
[»] chr5 (6 HSPs)
chr5 (38-230)||(39933310-39933501)
chr5 (1-83)||(39933519-39933601)
chr5 (43-104)||(12255874-12255935)
chr5 (132-175)||(27094312-27094355)
chr5 (38-71)||(18862677-18862710)
chr5 (137-210)||(22626812-22626885)
[»] chr2 (4 HSPs)
chr2 (137-192)||(40058577-40058632)
chr2 (43-102)||(13913444-13913503)
chr2 (149-204)||(39606952-39607007)
chr2 (55-104)||(23245578-23245627)
[»] chr7 (4 HSPs)
chr7 (36-105)||(29065404-29065473)
chr7 (140-202)||(31741954-31742016)
chr7 (39-83)||(13784890-13784934)
chr7 (39-83)||(23902777-23902821)
[»] chr3 (5 HSPs)
chr3 (43-104)||(17604802-17604863)
chr3 (50-104)||(35653120-35653173)
chr3 (41-83)||(36496998-36497040)
chr3 (33-83)||(36501610-36501660)
chr3 (38-102)||(36502364-36502427)
[»] chr1 (8 HSPs)
chr1 (38-106)||(23347520-23347588)
chr1 (64-103)||(14389732-14389771)
chr1 (43-78)||(15248900-15248935)
chr1 (134-167)||(6735737-6735770)
chr1 (135-192)||(34500160-34500217)
chr1 (42-83)||(51184537-51184578)
chr1 (50-102)||(4929814-4929866)
chr1 (134-202)||(49586315-49586383)
[»] scaffold0025 (1 HSPs)
scaffold0025 (33-83)||(150370-150420)
[»] chr8 (3 HSPs)
chr8 (135-192)||(39910478-39910535)
chr8 (110-202)||(43295929-43296024)
chr8 (73-109)||(5780719-5780755)
[»] chr4 (2 HSPs)
chr4 (36-105)||(49574075-49574144)
chr4 (133-202)||(46462384-46462453)


Alignment Details
Target: chr5 (Bit Score: 165; Significance: 2e-88; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 38 - 230
Target Start/End: Complemental strand, 39933501 - 39933310
Alignment:
Q  38 gattgatccaagggttatgatttaaccctctcatatctcacaataagatgtcctctcacttgatacatcccccattgaatgaatggtatatgtggttatt 137  Q
    |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||    
T  39933501 gattgatcaaagggttatgatttaaccctctcatctctcacaataagatgtcctctcacttgatacatcccc-attgaatgaatgatatatgtggttatt 39933403  T
Q  138 atagaccatatacattatttattcaatgaaattaaaaattgaaacattgtttatatttaagatcgaacgaagtacttgatttaattatttact 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  39933402 atagaccatatacattatttattcaatgaaattaaaaattgaaacgttgtttatatttaagatcgaaagaagtacttgatttaattatttact 39933310  T

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Target: chr5; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 39933519 - 39933601
Alignment:
Q  1 atcctctaattcaatcattaaaagttagaaaggttatgattgatccaagggttatgatttaaccctctcatatctcacaataa 83  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||    
T  39933519 atcctctaattcaatcattaaaagttagaagggttatgattgatccaagggttatgatttaaccctcttatctctcacaataa 39933601  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 104
Target Start/End: Original strand, 12255874 - 12255935
Alignment:
Q  43 atccaagggttatgatttaaccctctcatatctcacaataagatgtcctctcacttgataca 104  Q
    |||||||||| |||||| || |||||||| |||||||||||||  |||||||||||||||||    
T  12255874 atccaagggtcatgattgaagcctctcatctctcacaataagaaatcctctcacttgataca 12255935  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 175
Target Start/End: Original strand, 27094312 - 27094355
Alignment:
Q  132 gttattatagaccatatacattatttattcaatgaaattaaaaa 175  Q
    |||| |||||||||||||||| |||||||||||||| |||||||    
T  27094312 gttaatatagaccatatacataatttattcaatgaatttaaaaa 27094355  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 18862677 - 18862710
Alignment:
Q  38 gattgatccaagggttatgatttaaccctctcat 71  Q
    ||||||||||| ||||||||||||||||||||||    
T  18862677 gattgatccaaaggttatgatttaaccctctcat 18862710  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 210
Target Start/End: Original strand, 22626812 - 22626885
Alignment:
Q  137 tatagaccatatacattatttattcaatgaaattaaaaattgaaacattgtttatatttaagatcgaacgaagt 210  Q
    ||||||||| |||||| |||||||  ||||| |||||||||||||  ||||||||| || ||| |||| |||||    
T  22626812 tatagaccacatacatcatttatttcatgaatttaaaaattgaaaagttgtttataattgagaccgaatgaagt 22626885  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 137 - 192
Target Start/End: Original strand, 40058577 - 40058632
Alignment:
Q  137 tatagaccatatacattatttattcaatgaaattaaaaattgaaacattgtttata 192  Q
    |||||||||||||||||||||||||| |||| ||||||| ||||| ||||||||||    
T  40058577 tatagaccatatacattatttattcattgaatttaaaaagtgaaaaattgtttata 40058632  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 102
Target Start/End: Original strand, 13913444 - 13913503
Alignment:
Q  43 atccaagggttatgatttaaccctctcatatctcacaataagatgtcctctcacttgata 102  Q
    |||||| |||||| | | ||||||||||| |||||  |||||||||||||||||||||||    
T  13913444 atccaatggttattaatcaaccctctcatctctcattataagatgtcctctcacttgata 13913503  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 204
Target Start/End: Original strand, 39606952 - 39607007
Alignment:
Q  149 acattatttattcaatgaaattaaaaattgaaacattgtttatatttaagatcgaa 204  Q
    |||||||||||||||| || ||||||| | ||| |||||||||| |||||||||||    
T  39606952 acattatttattcaataaatttaaaaagtaaaaaattgtttataattaagatcgaa 39607007  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 104
Target Start/End: Original strand, 23245578 - 23245627
Alignment:
Q  55 tgatttaaccctctcatatctcacaataagatgtcctctcacttgataca 104  Q
    ||||||||||||||||  ||| |||||||||  |||||||||||||||||    
T  23245578 tgatttaaccctctcacctcttacaataagaactcctctcacttgataca 23245627  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 105
Target Start/End: Original strand, 29065404 - 29065473
Alignment:
Q  36 atgattgatccaagggttatgatttaaccctctcatatctcacaataagatgtcctctcacttgatacat 105  Q
    |||||||||||||||||| ||||||||||||||||  |||||   |||||  ||||||||||||||||||    
T  29065404 atgattgatccaagggttgtgatttaaccctctcacttctcattttaagaactcctctcacttgatacat 29065473  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 202
Target Start/End: Original strand, 31741954 - 31742016
Alignment:
Q  140 agaccatatacattatttattcaatgaaattaaaaattgaaacattgtttatatttaagatcg 202  Q
    |||||| |||||| |||||||  ||||| ||||||| |||||  |||||||||||||||||||    
T  31741954 agaccacatacatcatttattagatgaatttaaaaagtgaaaagttgtttatatttaagatcg 31742016  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 83
Target Start/End: Original strand, 13784890 - 13784934
Alignment:
Q  39 attgatccaagggttatgatttaaccctctcatatctcacaataa 83  Q
    |||||||||| ||||||| ||||| |||||||| |||||||||||    
T  13784890 attgatccaaaggttatggtttaatcctctcatctctcacaataa 13784934  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 83
Target Start/End: Complemental strand, 23902821 - 23902777
Alignment:
Q  39 attgatccaagggttatgatttaaccctctcatatctcacaataa 83  Q
    |||||||||| ||||||| ||||| |||||||| |||||||||||    
T  23902821 attgatccaaaggttatggtttaatcctctcatctctcacaataa 23902777  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 104
Target Start/End: Original strand, 17604802 - 17604863
Alignment:
Q  43 atccaagggttatgatttaaccctctcatatctcacaataagatgtcctctcacttgataca 104  Q
    |||||||||| |||||| || |||||||| |||||||||||||  |||||||||||||||||    
T  17604802 atccaagggtcatgattgaagcctctcatctctcacaataagaaatcctctcacttgataca 17604863  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 104
Target Start/End: Complemental strand, 35653173 - 35653120
Alignment:
Q  50 ggttatgatttaaccctctcatatctcacaataagatgtcctctcacttgataca 104  Q
    ||||| |||||||||||||||| ||||||||||| |  |||||||||||||||||    
T  35653173 ggttaggatttaaccctctcatctctcacaataa-aactcctctcacttgataca 35653120  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 83
Target Start/End: Complemental strand, 36497040 - 36496998
Alignment:
Q  41 tgatccaagggttatgatttaaccctctcatatctcacaataa 83  Q
    ||||| ||||||| ||||||||||||||||| |||||||||||    
T  36497040 tgatctaagggttgtgatttaaccctctcatctctcacaataa 36496998  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 83
Target Start/End: Original strand, 36501610 - 36501660
Alignment:
Q  33 gttatgattgatccaagggttatgatttaaccctctcatatctcacaataa 83  Q
    |||| |||||||||||||||| ||| |||| |||||||| |||||||||||    
T  36501610 gttaagattgatccaagggttgtgacttaatcctctcatctctcacaataa 36501660  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 102
Target Start/End: Original strand, 36502364 - 36502427
Alignment:
Q  38 gattgatccaagggttatgatttaaccctctcatatctcacaataagatgtcctctcacttgata 102  Q
    |||| |||||| ||||| |||| ||||||||||| ||||||||||| |  |||||||||||||||    
T  36502364 gattaatccaatggttaggattaaaccctctcatctctcacaataa-aactcctctcacttgata 36502427  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 23347520 - 23347588
Alignment:
Q  38 gattgatccaagggttatgatttaaccctctcatatctcacaataagatgtcctctcacttgatacatc 106  Q
    |||||||| ||| || |||||||||||||||||| | |||| |||| || |||||||||||||||||||    
T  23347520 gattgatcaaagagtcatgatttaaccctctcatctttcaccataaaatctcctctcacttgatacatc 23347588  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 103
Target Start/End: Complemental strand, 14389771 - 14389732
Alignment:
Q  64 cctctcatatctcacaataagatgtcctctcacttgatac 103  Q
    |||||||| ||||| |||||||||||||||||||||||||    
T  14389771 cctctcatctctcataataagatgtcctctcacttgatac 14389732  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 78
Target Start/End: Complemental strand, 15248935 - 15248900
Alignment:
Q  43 atccaagggttatgatttaaccctctcatatctcac 78  Q
    ||||||||||||||||||||||||||||| ||||||    
T  15248935 atccaagggttatgatttaaccctctcatctctcac 15248900  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 167
Target Start/End: Complemental strand, 6735770 - 6735737
Alignment:
Q  134 tattatagaccatatacattatttattcaatgaa 167  Q
    |||||||||||| |||||||||||||||||||||    
T  6735770 tattatagaccacatacattatttattcaatgaa 6735737  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 192
Target Start/End: Original strand, 34500160 - 34500217
Alignment:
Q  135 attatagaccatatacattatttattcaatgaaattaaaaattgaaacattgtttata 192  Q
    ||||||||||| || ||||||||||||||||||  |||||| ||||| |||| |||||    
T  34500160 attatagaccacatgcattatttattcaatgaatctaaaaagtgaaaaattgcttata 34500217  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 83
Target Start/End: Complemental strand, 51184578 - 51184537
Alignment:
Q  42 gatccaagggttatgatttaaccctctcatatctcacaataa 83  Q
    ||||||| |||||| ||||||||||||||| |||||||||||    
T  51184578 gatccaaaggttataatttaaccctctcatctctcacaataa 51184537  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 102
Target Start/End: Complemental strand, 4929866 - 4929814
Alignment:
Q  50 ggttatgatttaaccctctcatatctcacaataagatgtcctctcacttgata 102  Q
    |||||| ||||| | ||||||| |||||  |||||||||||||||||||||||    
T  4929866 ggttataatttagcactctcatctctcattataagatgtcctctcacttgata 4929814  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 202
Target Start/End: Original strand, 49586315 - 49586383
Alignment:
Q  134 tattatagaccatatacattatttattcaatgaaattaaaaattgaaacattgtttatatttaagatcg 202  Q
    ||||||||||||||||||| ||||||| ||||||  |||||| |||||  ||  |||||||| ||||||    
T  49586315 tattatagaccatatacatcatttattgaatgaacctaaaaagtgaaaagttacttatatttgagatcg 49586383  T

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Target: scaffold0025 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 33 - 83
Target Start/End: Complemental strand, 150420 - 150370
Alignment:
Q  33 gttatgattgatccaagggttatgatttaaccctctcatatctcacaataa 83  Q
    |||| |||||||| |||||||||| |||||||||||||| |||||||||||    
T  150420 gttaagattgatcgaagggttatggtttaaccctctcatctctcacaataa 150370  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 192
Target Start/End: Complemental strand, 39910535 - 39910478
Alignment:
Q  135 attatagaccatatacattatttattcaatgaaattaaaaattgaaacattgtttata 192  Q
    ||||||||||| |||||||||||||||||||||  |||||| ||||| |||| |||||    
T  39910535 attatagaccacatacattatttattcaatgaatctaaaaagtgaaaaattgcttata 39910478  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 202
Target Start/End: Original strand, 43295929 - 43296024
Alignment:
Q  110 cattgaatgaatggtatatgtggt---tattatagaccatatacattatttattcaatgaaattaaaaattgaaacattgtttatatttaagatcg 202  Q
    |||| |||||||| | ||||||||   |||||||||||| |||||| ||||||| |||||| ||||||| |||||  ||| ||| |||| ||||||    
T  43295929 cattcaatgaatgatgtatgtggtccatattatagaccacatacatcatttattgaatgaatttaaaaagtgaaaagttgcttacatttgagatcg 43296024  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 109
Target Start/End: Original strand, 5780719 - 5780755
Alignment:
Q  73 tctcacaataagatgtcctctcacttgatacatcccc 109  Q
    ||||||||||| ||||||||||| |||||||||||||    
T  5780719 tctcacaataacatgtcctctcatttgatacatcccc 5780755  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 105
Target Start/End: Complemental strand, 49574144 - 49574075
Alignment:
Q  36 atgattgatccaagggttatgatttaaccctctcatatctcacaataagatgtcctctcacttgatacat 105  Q
    |||||||||| ||||||| ||||||||||||||||  |||||   |||||  ||||||||||||||||||    
T  49574144 atgattgatctaagggttgtgatttaaccctctcacctctcattttaagaactcctctcacttgatacat 49574075  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 202
Target Start/End: Complemental strand, 46462453 - 46462384
Alignment:
Q  133 ttattatagaccatatacattatttattcaatgaaattaaaaattgaaacattgtttatatttaagatcg 202  Q
    |||||||| ||||||||||| ||||||| ||||||  |||||| |||||  ||| ||||| |||||||||    
T  46462453 ttattataaaccatatacatcatttatttaatgaatctaaaaagtgaaaagttgcttataattaagatcg 46462384  T

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