View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20179_low_9 (Length: 612)
Name: NF20179_low_9
Description: NF20179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20179_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 462; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 13 - 559
Target Start/End: Original strand, 2928169 - 2928698
Alignment:
| Q |
13 |
agcacagaaaaaagccataccagatcattgttagatagtcgtaatagaatgttacaaaggtgatatagatgcatcaatagaaaacttaaggctactgatc |
112 |
Q |
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| T |
2928169 |
agcacagaaaaaagccataccagatcactgttagatagtcgtaatagaatgttacaaaggtgatatagatgcatcaatagaaaacttaaggccactgatc |
2928268 |
T |
|
| Q |
113 |
atgaacctatctataaggaagaataagtagcataaacagagtcattgctcataaattcttaaaatatttatttagtttctgaagtatcttccttaaaagc |
212 |
Q |
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| T |
2928269 |
atgaacctatctataaggaagaataagtagcataaacagagtcattgctcataaattcttaaaatatttatttagtttctgaagtatcttccttaaaagc |
2928368 |
T |
|
| Q |
213 |
tctgtcaatgaaatgaaaatgaatggttcagaaaagaaagataatgaattaatcataccgccggttgaaaggtagtctattgacaagtggtaacacactt |
312 |
Q |
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| T |
2928369 |
tctatcaatgaaatgaaaatgaatggtttagaaaagaaagataatgaattaatcataccgccggttgaaaggtagtctattgacaagtggtaacacactt |
2928468 |
T |
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| Q |
313 |
ttttcataatcaatggtgacaaatatctgaagcatcctatgtatagcataaaaccacaagttctttgttacctgttcagcaaagtgtcgagcaacaacac |
412 |
Q |
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| T |
2928469 |
ttttcataatcaatggtgacaaat-----aagcatcctatgtatagcataaaaccacaagttctttgttacctgttcaacaaagtgtcgagcaacaacac |
2928563 |
T |
|
| Q |
413 |
gcgcaacctaattaacacgaaaaccaacataaaccaataagtctctattatcattcattagctgaaattagcaagtggcctccgagacctatacatatta |
512 |
Q |
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| T |
2928564 |
gcgcaacctaattaacacgaaaaccaacataaaccaataagtctctattatcattcattagctgaaattagcaagtggcctccgagaccta--------- |
2928654 |
T |
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| Q |
513 |
aatcctagagttaaattacggtccacaactgcaagtgcggtcataat |
559 |
Q |
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| T |
2928655 |
---cctagaattaaattacggtccacaactgcaagtgcggtcataat |
2928698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 212 - 488
Target Start/End: Complemental strand, 2310703 - 2310431
Alignment:
| Q |
212 |
ctctgtcaatgaaatgaaaatgaatggttcagaaaagaaagataatgaattaatcataccgccggttgaaaggtagtctattgacaagtggtaacacact |
311 |
Q |
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|||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||||| || ||||||||||||| || || ||||||| ||| || |
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| T |
2310703 |
ctctatcaatgaaatgaaaatgaatggtttagaaaagaaagataatgaattagtcataccgacgattgaaaggtagtcgatcgataagtggtgacaatct |
2310604 |
T |
|
| Q |
312 |
tttttcataatcaatggtgacaaatatctgaagcatcctatgtatagcataaaaccacaagttctttgttacctgttcagcaaagtgtcgagcaacaaca |
411 |
Q |
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| T |
2310603 |
tttttcaaaatcaatggtgacaaatatctcaagcatcctatgtatagcataaaaccagaagctctttgttatcttttcagcaaagtgtcgagcaacaaca |
2310504 |
T |
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| Q |
412 |
cgcgcaacctaattaacacgaaaaccaacataaaccaataagtctctattatcattcattagctgaaattagcaagt |
488 |
Q |
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| T |
2310503 |
tgcgcaacctaattaacacgaaaaccaacataaactgattagtctctattat----cattagctgaaattagcaagt |
2310431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 123 - 181
Target Start/End: Complemental strand, 2310985 - 2310927
Alignment:
| Q |
123 |
ctataaggaagaataagtagcataaacagagtcattgctcataaattcttaaaatattt |
181 |
Q |
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| T |
2310985 |
ctataaggaagaataattaacataaacagagccattgctcataaattcttaaaatattt |
2310927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 555 - 593
Target Start/End: Original strand, 2928709 - 2928747
Alignment:
| Q |
555 |
ataattttttacaaaaacatcacaaccgcaattgactac |
593 |
Q |
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| T |
2928709 |
ataattttttacaaaaacatcacaaccgcaattgactac |
2928747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 496 - 593
Target Start/End: Complemental strand, 2310397 - 2310290
Alignment:
| Q |
496 |
gagacctatacatattaaatcctagagttaaattacggtccacaactgcaagtgcggtc----------ataattttttacaaaaacatcacaaccgcaa |
585 |
Q |
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||||||||| ||||||||||| |||| ||||||| ||||||||||||| || ||| ||| | |||||| ||||||||| |||||||||||| |
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| T |
2310397 |
gagacctatccatattaaatcatagaattaaattgcggtccacaactggaaatgcagtcacaatatattaaaattttctacaaaaacgtcacaaccgcaa |
2310298 |
T |
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| Q |
586 |
ttgactac |
593 |
Q |
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|||||||| |
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| T |
2310297 |
ttgactac |
2310290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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