View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20179_low_92 (Length: 212)

Name: NF20179_low_92
Description: NF20179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20179_low_92
NF20179_low_92
[»] chr4 (4 HSPs)
chr4 (13-80)||(54159791-54159858)
chr4 (77-151)||(54159908-54159982)
chr4 (14-71)||(53867464-53867521)
chr4 (154-194)||(54160114-54160154)
[»] chr5 (1 HSPs)
chr5 (14-71)||(14774579-14774636)


Alignment Details
Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 54159791 - 54159858
Alignment:
Q  13 cagagaccaaggtaaaagacttgagcacctttgacaaaaatgcatcaagtgatagtcctgtaattcca 80  Q
    ||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  54159791 cagagaccaaggtgaaaggcttgagcacctttgacaaaaatgcttcaagtgatagtcctgtaattcca 54159858  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 77 - 151
Target Start/End: Original strand, 54159908 - 54159982
Alignment:
Q  77 tccagggactgaaattaaaaatcataaaatattaatatgtctaaggtcctcacagacatccagattcaggaaagg 151  Q
    |||||||||||||||||||||||||||||||| |||||| |||  |||||||| |||||| ||||||||||||||    
T  54159908 tccagggactgaaattaaaaatcataaaatatcaatatggctagagtcctcactgacatcaagattcaggaaagg 54159982  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 53867521 - 53867464
Alignment:
Q  14 agagaccaaggtaaaagacttgagcacctttgacaaaaatgcatcaagtgatagtcct 71  Q
    |||||| |||| |||| ||| |||||||||||||||||||||||||||||||||||||    
T  53867521 agagactaaggaaaaaaactcgagcacctttgacaaaaatgcatcaagtgatagtcct 53867464  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 194
Target Start/End: Original strand, 54160114 - 54160154
Alignment:
Q  154 tcaaactgccccactaccaaattaagaattcaaactaatcc 194  Q
    ||||||||||||| ||||||| |||||||||||||||||||    
T  54160114 tcaaactgccccattaccaaagtaagaattcaaactaatcc 54160154  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 14774579 - 14774636
Alignment:
Q  14 agagaccaaggtaaaagacttgagcacctttgacaaaaatgcatcaagtgatagtcct 71  Q
    |||||| ||| ||||||||||| |||||| ||||||||||||||||||||||||||||    
T  14774579 agagacaaagataaaagacttgtgcacctctgacaaaaatgcatcaagtgatagtcct 14774636  T

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