View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20179_low_94 (Length: 207)
Name: NF20179_low_94
Description: NF20179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20179_low_94 |
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Alignment Details
Target: chr4 (Bit Score: 168; Significance: 3e-90; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 18 - 193
Target Start/End: Complemental strand, 48790266 - 48790091
Alignment:
| Q |
18 |
aagacatttttcgattctggtgagtttggatttggtctatcgactgtgtctttgatacccaaccgtgattgtccaccacatgctcaattcattgatacat |
117 |
Q |
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| T |
48790266 |
aagacatttttcgattctggtgagtttggatttggtctatcgactgtgtctttgatacccaaccgtgattgtccaccacatgcccaattcattgatacat |
48790167 |
T |
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| Q |
118 |
acattcactctgatgatggtaccccaagcatcttgaagaatgcaatctgtgttttcgaacaatatgatagtattat |
193 |
Q |
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| T |
48790166 |
acattcactctgatgatggtaccccaagcatcttgaagaatgcaatttgtgttttcgaacaatatgatagtattat |
48790091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 18 - 193
Target Start/End: Complemental strand, 15825797 - 15825622
Alignment:
| Q |
18 |
aagacatttttcgattctggtgagtttggatttggtctatcgactgtgtctttgatacccaaccgtgattgtccaccacatgctcaattcattgatacat |
117 |
Q |
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| T |
15825797 |
aagacatttttcgatgctggagagtatggatttggtcgatctactgtttctttgatacctaatcgtgactgtccaccacactctcatttcattgatacat |
15825698 |
T |
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| Q |
118 |
acattcactctgatgatggtaccccaagcatcttgaagaatgcaatctgtgttttcgaacaatatgatagtattat |
193 |
Q |
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| T |
15825697 |
acattcactctgtagatggtacaccaagcctcttgaagaatgcaatttgtgtttttgaacaatatggtagtattat |
15825622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 30 - 183
Target Start/End: Complemental strand, 48816555 - 48816402
Alignment:
| Q |
30 |
gattctggtgagtttggatttggtctatcgactgtgtctttgatacccaaccgtgattgtccaccacatgctcaattcattgatacatacattcactctg |
129 |
Q |
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| T |
48816555 |
gattctggagagtttggatttggtctgtcaacggtgtctttgatacctaatcgtgattgtccaccacatgctcagttcattgatacatacattcactcgg |
48816456 |
T |
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| Q |
130 |
atgatggtaccccaagcatcttgaagaatgcaatctgtgttttcgaacaatatg |
183 |
Q |
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| T |
48816455 |
ctgatggtacaccaagcctattgaagaatgcaatttgtgtgtttgaacaatatg |
48816402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 30 - 183
Target Start/End: Complemental strand, 48807996 - 48807839
Alignment:
| Q |
30 |
gattctggtgagtttggatttggtctatcgactgtgtctttgatacccaaccgtgattgtccaccacatgctca----attcattgatacatacattcac |
125 |
Q |
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| T |
48807996 |
gattctggagagtttggatttgccctgtcaacggtgtctttgatacctaatcgtgattgtccaccacatgctcagttcattcatacatacatacattcac |
48807897 |
T |
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| Q |
126 |
tctgatgatggtaccccaagcatcttgaagaatgcaatctgtgttttcgaacaatatg |
183 |
Q |
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| T |
48807896 |
tcggctgatggtacaccaagcctattgaagaatgcaatttgtctgtttgaacaatatg |
48807839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 182
Target Start/End: Original strand, 48833947 - 48834095
Alignment:
| Q |
34 |
ctggtgagtttggatttggtctatcgactgtgtctttgatacccaaccgtgattgtccaccacatgctcaattcattgatacatacattcactctgatga |
133 |
Q |
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|||| ||||||| ||||||| | || || |||||||||||||| || | ||||||||||||| |||| | |||||||||||||||| |||||| | || |
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| T |
48833947 |
ctggagagtttgaatttggtttgtcaacggtgtctttgatacctaatcctgattgtccaccaaatgccgagttcattgatacatacactcactcagcaga |
48834046 |
T |
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| Q |
134 |
tggtaccccaagcatcttgaagaatgcaatctgtgttttcgaacaatat |
182 |
Q |
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| T |
48834047 |
gggtgcaccaatccccttgaagaatgcagtttgtatttttgaacaatat |
48834095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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