View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20179_low_96 (Length: 203)
Name: NF20179_low_96
Description: NF20179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20179_low_96 |
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Alignment Details
Target: chr7 (Bit Score: 156; Significance: 4e-83; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 20 - 191
Target Start/End: Complemental strand, 27093186 - 27093015
Alignment:
| Q |
20 |
gaaccaagtcaaacttggtgatgtttgtcattcaccagatcaacttcaacgactttattccgaggttcatctccttaagcaccttgaccataaatccatg |
119 |
Q |
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| T |
27093186 |
gaaccaagtcaaacttggtgatgtttgtcattcaccagatcaacttcaacgactttattcagaggttcatctccttaagcacctcgaccataaatccatg |
27093087 |
T |
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| Q |
120 |
atgatcttctatggttcatggattgatatcaatggcaaaaccttcaacttcatcactgaattgttcatctca |
191 |
Q |
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| T |
27093086 |
atgatcttctatggttcttggattgatatcaatggcaaaaccttcaacttcatcactgaattgttcacctca |
27093015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 20 - 191
Target Start/End: Original strand, 27185115 - 27185286
Alignment:
| Q |
20 |
gaaccaagtcaaacttggtgatgtttgtcattcaccagatcaacttcaacgactttattccgaggttcatctccttaagcaccttgaccataaatccatg |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
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| T |
27185115 |
gaaccaagtcaaacttggtgatgtttgtcattcaccagatcaacttcaacgactttattcagaggttcatctccttaagcacctcgaccataaatccatg |
27185214 |
T |
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| Q |
120 |
atgatcttctatggttcatggattgatatcaatggcaaaaccttcaacttcatcactgaattgttcatctca |
191 |
Q |
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| T |
27185215 |
atgatcttctatggttcttggattgatatcaatggcaaaaccttcaacttcatcactgaattgttcacctca |
27185286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 3e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 20 - 186
Target Start/End: Original strand, 9906999 - 9907165
Alignment:
| Q |
20 |
gaaccaagtcaaacttggtgatgtttgtcattcaccagatcaacttcaacgactttattccgaggttcatctccttaagcaccttgaccataaatccatg |
119 |
Q |
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||||||| |||| |||| |||||||| |||||||||||||||||||||||| || ||||| |||||||||||||| || || | || ||| | || || |
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| T |
9906999 |
gaaccaaatcaagcttgatgatgtttttcattcaccagatcaacttcaacgtctctattcagaggttcatctcctaaaaaacttggatcatgactctatc |
9907098 |
T |
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| Q |
120 |
atgatcttctatggttcatggattgatatcaatggcaaaaccttcaacttcatcactgaattgttca |
186 |
Q |
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|||| ||| ||||| | ||||||||| |||| | | ||||||||||||||||||||||||||||| |
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| T |
9907099 |
atgactttccatggtacttggattgatgccaattgtagaaccttcaacttcatcactgaattgttca |
9907165 |
T |
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