View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20179_low_98 (Length: 202)

Name: NF20179_low_98
Description: NF20179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20179_low_98
NF20179_low_98
[»] chr3 (6 HSPs)
chr3 (33-185)||(7618275-7618426)
chr3 (51-189)||(48983489-48983628)
chr3 (72-176)||(2160087-2160192)
chr3 (72-176)||(40088705-40088810)
chr3 (58-168)||(19689639-19689750)
chr3 (51-189)||(28356601-28356740)
[»] chr5 (3 HSPs)
chr5 (51-189)||(5605387-5605526)
chr5 (51-189)||(24417425-24417564)
chr5 (72-168)||(21081150-21081247)
[»] chr2 (2 HSPs)
chr2 (51-189)||(1795771-1795910)
chr2 (52-156)||(25987505-25987609)
[»] chr8 (2 HSPs)
chr8 (67-168)||(23745624-23745726)
chr8 (86-187)||(12920422-12920524)
[»] scaffold0163 (1 HSPs)
scaffold0163 (72-150)||(20763-20842)
[»] scaffold0028 (2 HSPs)
scaffold0028 (51-189)||(99342-99481)
scaffold0028 (58-168)||(86582-86690)
[»] chr4 (2 HSPs)
chr4 (51-189)||(26817099-26817238)
chr4 (51-189)||(54694828-54694967)
[»] chr1 (2 HSPs)
chr1 (86-187)||(14277126-14277228)
chr1 (58-168)||(21756050-21756161)
[»] chr7 (2 HSPs)
chr7 (72-152)||(14639834-14639915)
chr7 (58-155)||(13934429-13934527)


Alignment Details
Target: chr3 (Bit Score: 101; Significance: 3e-50; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 33 - 185
Target Start/End: Original strand, 7618275 - 7618426
Alignment:
Q  33 gttataaatagtaatcaaaaatagtttttcccttttcaactttgtctaaatttgaggatggatgcatgagagtatgcataattttttcttcaatcatttt 132  Q
    |||| |||||||| ||||||||||||||||| |||||| |||||||||||||||| |||||||||||| |||||  ||| |||||| |||| ||||||||    
T  7618275 gttaaaaatagtattcaaaaatagtttttcc-ttttcatctttgtctaaatttgaagatggatgcatgcgagtagacatgatttttgcttcgatcatttt 7618373  T
Q  133 gtatttttgagaagatctttgatgcatatttcttgatagataaagataccatt 185  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  7618374 gtatttttgagaagatctttgatgtatatttcttgatagataaagataccatt 7618426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 51 - 189
Target Start/End: Complemental strand, 48983628 - 48983489
Alignment:
Q  51 aaatagtttttcccttttcaactttgtctaaatttgaggatggatgcatgagagtatgcataattttttcttcaatcattttgta-tttttgagaagatc 149  Q
    ||||||||||||| |||||| ||||||||||| |||| |||||||||||| ||||   ||| |||||  ||||| ||||||| || ||||||||||||||    
T  48983628 aaatagtttttccattttcatctttgtctaaacttgaagatggatgcatgggagttaccattattttagcttcattcattttatattttttgagaagatc 48983529  T
Q  150 tttgatgcatatttcttgatagataaagataccatttgat 189  Q
    ||| ||  || |||||||| | ||||| || |||||||||    
T  48983528 tttaatatatttttcttgacaaataaatattccatttgat 48983489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 176
Target Start/End: Complemental strand, 2160192 - 2160087
Alignment:
Q  72 ctttgtctaaatttgaggatggatgcatgagagtatgcataattttttcttcaatcattttgtattttt-gagaagatctttgatgcatatttcttgata 170  Q
    ||||||||||  ||||||| ||||||||| |||||  |||||||||| ||||| ||||||| ||||||| |||||||||| | ||  || |||||||| |    
T  2160192 ctttgtctaagcttgaggaaggatgcatgggagtagacataatttttgcttcattcattttatattttttgagaagatctctaatatatttttcttgaaa 2160093  T
Q  171 gataaa 176  Q
    ||||||    
T  2160092 gataaa 2160087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 176
Target Start/End: Original strand, 40088705 - 40088810
Alignment:
Q  72 ctttgtctaaatttgaggatggatgcatgagagtatgcataattttttcttcaatcattttgtatttt-tgagaagatctttgatgcatatttcttgata 170  Q
    ||||||||||  ||||||| ||||||||| |||||  ||| |||||| ||||| ||||||| |||||| ||||||||||| | ||  || |||||||| |    
T  40088705 ctttgtctaagcttgaggaaggatgcatgggagtagacatcatttttgcttcattcattttatattttttgagaagatctctaatatatttttcttgaaa 40088804  T
Q  171 gataaa 176  Q
    ||||||    
T  40088805 gataaa 40088810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 58 - 168
Target Start/End: Complemental strand, 19689750 - 19689639
Alignment:
Q  58 ttttcccttttcaactttgtctaaatttgaggatggatgcatgagagtatgcataattttttcttcaatcattttgtatttttga-gaagatctttgatg 156  Q
    |||||| |||||| ||||||| | |||||| || ||||||||  |||||  |||||||||  ||||| ||||||| ||||||| | |||||||||||||     
T  19689750 ttttccattttcatctttgtcaagatttgatgaaggatgcataggagtagtcataattttggcttcattcattttatattttttaagaagatctttgata 19689651  T
Q  157 catatttcttga 168  Q
     || ||||||||    
T  19689650 tatttttcttga 19689639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 51 - 189
Target Start/End: Original strand, 28356601 - 28356740
Alignment:
Q  51 aaatagtttttcccttttcaactttgtctaaatttgaggatggatgcatgagagtatgcataattttttcttcaatcattttgtatttt-tgagaagatc 149  Q
    |||| |||||||| |||||| | || |||||||| || | |||||||||| ||||   ||| |||||  ||||| ||||||| |||||| ||||||||||    
T  28356601 aaatggtttttccattttcatccttatctaaattagatgttggatgcatgggagttgccattattttggcttcattcattttatattttttgagaagatc 28356700  T
Q  150 tttgatgcatatttcttgatagataaagataccatttgat 189  Q
    ||| ||  || |||||||| | ||||| || |||||||||    
T  28356701 ttttatatatttttcttgacaaataaaaatgccatttgat 28356740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 51 - 189
Target Start/End: Complemental strand, 5605526 - 5605387
Alignment:
Q  51 aaatagtttttcccttttcaactttgtctaaatttgaggatggatgcatgagagtatgcataattttttcttcaatcattttgta-tttttgagaagatc 149  Q
    ||||||||||||| |||||| ||||||||||| |||| |||||||||||| ||||   ||| |||||  ||||| ||||||| || ||||||||||||||    
T  5605526 aaatagtttttccattttcatctttgtctaaacttgaagatggatgcatgggagttaccattattttagcttcattcattttatattttttgagaagatc 5605427  T
Q  150 tttgatgcatatttcttgatagataaagataccatttgat 189  Q
    ||| ||  || |||||||| | ||||| || |||||||||    
T  5605426 tttaatatatttttcttgacaaataaatattccatttgat 5605387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 51 - 189
Target Start/End: Complemental strand, 24417564 - 24417425
Alignment:
Q  51 aaatagtttttcccttttcaactttgtctaaatttgaggatggatgcatgagagtatgcataattttttcttcaatcattttgtattttt-gagaagatc 149  Q
    |||| |||||||| |||||| | || |||||||| || | |||||||||| ||||   ||| |||||  ||||| ||||||| ||||||| |||||||||    
T  24417564 aaatggtttttccattttcatccttatctaaattagatgttggatgcatgggagttgccattattttggcttcattcattttatattttttgagaagatc 24417465  T
Q  150 tttgatgcatatttcttgatagataaagataccatttgat 189  Q
    ||| ||  || |||||||| | ||||| || |||||||||    
T  24417464 ttttatatatttttcttgacaaataaaaatgccatttgat 24417425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 72 - 168
Target Start/End: Original strand, 21081150 - 21081247
Alignment:
Q  72 ctttgtctaaatttgaggatggatgcatgagagtatgcataattttttcttcaatcattttgtatttt-tgagaagatctttgatgcatatttcttga 168  Q
    ||||||||||  | ||||| |||||||||  ||||  ||||||||||  |||| |||||||||||||| ||||||||||| || || || ||||||||    
T  21081150 ctttgtctaagctcgaggaaggatgcatggaagtagacataatttttgattcattcattttgtattttgtgagaagatctctggtgtatttttcttga 21081247  T

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Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 51 - 189
Target Start/End: Complemental strand, 1795910 - 1795771
Alignment:
Q  51 aaatagtttttcccttttcaactttgtctaaatttgaggatggatgcatgagagtatgcataattttttcttcaatcattttgta-tttttgagaagatc 149  Q
    ||||||||||||| |||||| ||||||||||| |||| |||||||||||| ||||   ||| |||||  ||||| ||||||| || ||||||||||||||    
T  1795910 aaatagtttttccattttcatctttgtctaaacttgaagatggatgcatgggagttaccattattttagcttcattcattttatattttttgagaagatc 1795811  T
Q  150 tttgatgcatatttcttgatagataaagataccatttgat 189  Q
    ||| ||  || |||||||| | ||||| || |||||||||    
T  1795810 tttaatatatttttcttgacaaataaatattccatttgat 1795771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 156
Target Start/End: Complemental strand, 25987609 - 25987505
Alignment:
Q  52 aatagtttttcccttttcaactttgtctaaatttgaggatggatgcatgagagtatgc-ataattttttcttcaatcattttgtatttttgagaagatct 150  Q
    |||||||||||| | || | ||||||||| |||||| |||||||| |||||| | ||| || |||||  ||||| ||||||||||||||| ||| |||||    
T  25987609 aatagtttttccttctttatctttgtctagatttgacgatggatgtatgagaat-tgctatgattttggcttcattcattttgtattttttagatgatct 25987511  T
Q  151 ttgatg 156  Q
    ||||||    
T  25987510 ttgatg 25987505  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 67 - 168
Target Start/End: Original strand, 23745624 - 23745726
Alignment:
Q  67 ttcaactttgtctaaatttgaggatggatgcatgagagtatgcataattttttcttcaatcattttgtatttt-tgagaagatctttgatgcatatttct 165  Q
    |||| ||||||||||  ||||||| |||||||||  ||||  |||||||||| ||||| |||||||||||||| ||||||||||| ||||| || |||||    
T  23745624 ttcatctttgtctaagcttgaggaaggatgcatggaagtagacataatttttgcttcattcattttgtattttgtgagaagatctctgatgtatttttct 23745723  T
Q  166 tga 168  Q
    |||    
T  23745724 tga 23745726  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 86 - 187
Target Start/End: Complemental strand, 12920524 - 12920422
Alignment:
Q  86 gaggatggatgcatgagagtatgcataattttttcttcaatcattttgta-tttttgagaagatctttgatgcatatttcttgatagataaagataccat 184  Q
    ||||||||||||||| |||||  |||||||||  ||||| ||||||| || ||||||||||||||||| ||  || |||||||| | ||||| || ||||    
T  12920524 gaggatggatgcatgggagtagccataattttggcttcattcattttatattttttgagaagatctttaatatatttttcttgacaaataaatattccat 12920425  T
Q  185 ttg 187  Q
    |||    
T  12920424 ttg 12920422  T

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Target: scaffold0163 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 150
Target Start/End: Complemental strand, 20842 - 20763
Alignment:
Q  72 ctttgtctaaatttgaggatggatgcatgagagtatgcataattttttcttcaatcattttgta-tttttgagaagatct 150  Q
    ||||||||||  ||||||| ||||||||| |||||  |||||||||| ||||| ||||||| || |||||||||||||||    
T  20842 ctttgtctaagcttgaggaaggatgcatgcgagtagacataatttttgcttcattcattttataatttttgagaagatct 20763  T

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Target: scaffold0028 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 189
Target Start/End: Original strand, 99342 - 99481
Alignment:
Q  51 aaatagtttttcccttttcaactttgtctaaatttgaggatggatgcatgagagtatgcataattttttcttcaatcattttgtatttt-tgagaagatc 149  Q
    |||| |||||||| |||||| | || |||||||| || | |||||||||| ||||   ||| |||||  ||||| ||||||| |||||| ||||||||||    
T  99342 aaatggtttttccattttcatccttatctaaattagatgttggatgcatgggagttgccattattttggcttcattcattttatattttttgagaagatc 99441  T
Q  150 tttgatgcatatttcttgatagataaagataccatttgat 189  Q
    ||| ||  || |||||||| ||||||| || |||||||||    
T  99442 ttttatatatttttcttgacagataaaaatgccatttgat 99481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 58 - 168
Target Start/End: Complemental strand, 86690 - 86582
Alignment:
Q  58 ttttcccttttcaactttgtctaaatttgaggatggatgcatgagagtatgcataattttttcttcaatcattttgtatttttgagaagatctttgatgc 157  Q
    |||||| |||||| ||||||| | |||||| || ||||||||  |||||  |||||||||  ||||||||||||| |||||||   ||||||||||||      
T  86690 ttttccattttcatctttgtcaagatttgatgaaggatgcataggagtagtcataattttggcttcaatcattttatattttt--taagatctttgatat 86593  T
Q  158 atatttcttga 168  Q
    || ||||||||    
T  86592 atttttcttga 86582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 189
Target Start/End: Complemental strand, 26817238 - 26817099
Alignment:
Q  51 aaatagtttttcccttttcaactttgtctaaatttgaggatggatgcatgagagtatgcataattttttcttcaatcattttgtattttt-gagaagatc 149  Q
    |||| |||||||| |||||| | || |||||||| || | |||||||||| ||||   ||| |||||  ||||| ||||||| ||||||| |||||||||    
T  26817238 aaatggtttttccattttcatccttatctaaattagatgttggatgcatgggagttgccattattttggcttcattcattttatattttttgagaagatc 26817139  T
Q  150 tttgatgcatatttcttgatagataaagataccatttgat 189  Q
    ||| ||  || |||||||| ||||||| || |||||||||    
T  26817138 ttttatatatttttcttgacagataaaaatgccatttgat 26817099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 51 - 189
Target Start/End: Original strand, 54694828 - 54694967
Alignment:
Q  51 aaatagtttttcccttttcaactttgtctaaatttgaggatggatgcatgagagtatgcataattttttcttcaatcattttgtatttt-tgagaagatc 149  Q
    |||| |||||||| |||||| | || |||||||| || | |||||||||| ||||   ||| |||||  ||||| ||||||| |||||| ||||||||||    
T  54694828 aaatggtttttccattttcatccttatctaaattagatgttggatgcatgggagttgccattattttggcttcattcattttatattttttgagaagatc 54694927  T
Q  150 tttgatgcatatttcttgatagataaagataccatttgat 189  Q
    ||| ||  || |||||||| | ||||| || |||||||||    
T  54694928 ttttatatatttttcttgacaaataaaaatgccatttgat 54694967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 86 - 187
Target Start/End: Original strand, 14277126 - 14277228
Alignment:
Q  86 gaggatggatgcatgagagtatgcataattttttcttcaatcattttgta-tttttgagaagatctttgatgcatatttcttgatagataaagataccat 184  Q
    ||||||||||||||| |||||  |||||||||  ||||| ||||||| || ||||||||||||||||| ||  || |||||||| | ||||| || ||||    
T  14277126 gaggatggatgcatgggagtagccataattttggcttcattcattttatattttttgagaagatctttaatatatttttcttgacaaataaatattccat 14277225  T
Q  185 ttg 187  Q
    |||    
T  14277226 ttg 14277228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 58 - 168
Target Start/End: Complemental strand, 21756161 - 21756050
Alignment:
Q  58 ttttcccttttcaactttgtctaaatttgaggatggatgcatgagagtatgcataattttttcttcaatcattttgta-tttttgagaagatctttgatg 156  Q
    |||||| |||||| ||||||| | ||||||  | |||||||||||||||  |||||||||  ||||| |||| || || ||||| ||||||||||||||     
T  21756161 ttttccattttcatctttgtcaagatttgataaaggatgcatgagagtagtcataattttggcttcattcatcttatattttttaagaagatctttgata 21756062  T
Q  157 catatttcttga 168  Q
     || ||||||||    
T  21756061 tatttttcttga 21756050  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 152
Target Start/End: Original strand, 14639834 - 14639915
Alignment:
Q  72 ctttgtctaaatttgaggatggatgcatgagagtatgcataattttttcttcaatcattttgtattt-ttgagaagatcttt 152  Q
    ||||||||| | | ||||||||||||||| |||||  |||||||||  ||||| ||||||| ||||| ||||||||||||||    
T  14639834 ctttgtctagactagaggatggatgcatgggagtagccataattttggcttcattcattttatatttcttgagaagatcttt 14639915  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 155
Target Start/End: Complemental strand, 13934527 - 13934429
Alignment:
Q  58 ttttcccttttcaactttgtctaaatttgaggatggatgcatgagagtatgcataattttttcttcaatcattttgta-tttttgagaagatctttgat 155  Q
    |||||| |||||| ||||||| | |||||| || ||||||||||||||   |||||||||  ||||| |||| || || ||||| ||||||||||||||    
T  13934527 ttttccattttcatctttgtcaagatttgatgagggatgcatgagagtggtcataattttggcttcattcatcttatactttttaagaagatctttgat 13934429  T

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