View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2017_high_4 (Length: 243)
Name: NF2017_high_4
Description: NF2017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2017_high_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 9164707 - 9164481
Alignment:
| Q |
1 |
gcatttttaaatacttgcatatggcttgaactagacttcagcatctttcattaatcagcggatcaattttatttgtccaggttgatgacgaggatggtgt |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9164707 |
gcatttttaaatacttgaatatggcttgaactagacttcagcatctttcattaatcagtggatcaattttatttgtccaggttgatgacgaggatggtgt |
9164608 |
T |
|
| Q |
101 |
tcctgctataactgctacaaagcagaaggaacctaaggaagaacctattgacaacagtccttcaaaacctacagcaacaggacctgctcgtggaacacct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9164607 |
tcctgctataactgctacaaagcagaaggaacctaaggaagaacctattgacagcagtccttcaaaacctacagcaacaggacctgctcgtggaacacct |
9164508 |
T |
|
| Q |
201 |
acttcaaaggggaaaagaaaagaaaat |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
9164507 |
acttcaaaggggaaaagaaaagaaaat |
9164481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 2 - 209
Target Start/End: Complemental strand, 9151891 - 9151684
Alignment:
| Q |
2 |
catttttaaatacttgcatatggcttgaactagacttcagcatctttcattaatcagcggatcaattttatttgtccaggttgatgacgaggatggtgtt |
101 |
Q |
| |
|
||||||||||| ||||| ||| | ||| | | || |||||||| | | |||||||||||||||||||||||| || || |||| ||||| || |||||| |
|
|
| T |
9151891 |
catttttaaatccttgcctatagtttggattggatttcagcatatcttgttaatcagcggatcaattttatttttctagattgacgacgaagacggtgtt |
9151792 |
T |
|
| Q |
102 |
cctgctataactgctacaaagcagaaggaacctaaggaagaacctattgacaacagtccttcaaaacctacagcaacaggacctgctcgtggaacaccta |
201 |
Q |
| |
|
|||||| | |||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9151791 |
cctgctgtgactgctactaagcagaaggaacctaaggaagaacctgttgataacagtccttcaaaacctacagcaacaggacctgctcgtggaacaccta |
9151692 |
T |
|
| Q |
202 |
cttcaaag |
209 |
Q |
| |
|
|||||||| |
|
|
| T |
9151691 |
cttcaaag |
9151684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 112 - 222
Target Start/End: Original strand, 9190713 - 9190823
Alignment:
| Q |
112 |
ctgctacaaagcagaaggaacctaaggaagaacctattgacaacagtccttcaaaacctacagcaacaggacctgctcgtggaacacctacttcaaaggg |
211 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||||| |||| | ||||||||||||||||| |||||| ||||| |||||||||||||| ||||||||| |
|
|
| T |
9190713 |
ctgctagaaagcagaaggaacctaaagaagaacctgttgaaagtagtccttcaaaacctacggcaacatgacctactcgtggaacacctgcttcaaaggc |
9190812 |
T |
|
| Q |
212 |
gaaaagaaaag |
222 |
Q |
| |
|
||||||||||| |
|
|
| T |
9190813 |
gaaaagaaaag |
9190823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University