View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2017_high_5 (Length: 242)
Name: NF2017_high_5
Description: NF2017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2017_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 149; Significance: 8e-79; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 17 - 169
Target Start/End: Original strand, 45071323 - 45071475
Alignment:
| Q |
17 |
actagaaacaattagtatgcgcttgcactttgttattgctttactaaatgttgttcattattagagaaattcattattgcttctatacattatgtagatt |
116 |
Q |
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| T |
45071323 |
actagaaacaattagtatgcgcttgcactttgttattgctttactaaatgttgttcattattagagaaattcattattgcttctatacattatgtagatt |
45071422 |
T |
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| Q |
117 |
cgaaaacaaagtgatcttaattaacactaagtatagagaaaagtgaggattga |
169 |
Q |
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| T |
45071423 |
cgaaaacaaagtgatcttaattaacattaagtatagagaaaagtgaggattga |
45071475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 196 - 242
Target Start/End: Original strand, 45071474 - 45071520
Alignment:
| Q |
196 |
gagttgttggaatgcacaaccaatattatagtacaagaaatgaaatc |
242 |
Q |
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| T |
45071474 |
gagttgttggaatgcacaaccaatattatagtacaagaaatgaaatc |
45071520 |
T |
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