View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2017_low_12 (Length: 241)
Name: NF2017_low_12
Description: NF2017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2017_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 7258060 - 7257902
Alignment:
| Q |
1 |
cagactttggaaggccaaagcatcagaacaacttggagtagtaagttgatttcattgttgattcattcatcctctttttttacacacacacnnnnnnnnn |
100 |
Q |
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| T |
7258060 |
cagactttggaaggccaaagcatcagaacaacttggagtagtaagttgatttcatt-----------catcctctttttttacacacacaaaaaaaaaaa |
7257972 |
T |
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| Q |
101 |
nnnn------ctgtcatctattaattgtggttcatgttgtactaagattgaaattctattataactgtga |
164 |
Q |
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| T |
7257971 |
aaaaaaaaaactgtcatctattaattgtggttcatgttgtactaagattgaaattctattataactgtga |
7257902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 170 - 232
Target Start/End: Complemental strand, 7257862 - 7257800
Alignment:
| Q |
170 |
ttaataatttctcttctgagaggcccttcaattcattccgagattcacctgtttatgatgatg |
232 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
7257862 |
ttaataatttctcttctgagaggcccttcagttcattccgagattcacctgtttatgatgatg |
7257800 |
T |
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