View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2017_low_14 (Length: 237)
Name: NF2017_low_14
Description: NF2017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2017_low_14 |
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| [»] chr8 (9 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 14 - 237
Target Start/End: Complemental strand, 2005589 - 2005366
Alignment:
| Q |
14 |
tgtgaacttgaccacaagtttccatggagaaaacaattcatattgcagttgttccaggtgttggatatagccatttggtctctattcttcaattctccaa |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2005589 |
tgtgaacttgaccacaagtttccatggagaaaacaattcatattgcagttgttccaggtgttggatatagccatttggtctctattcttcaattctccaa |
2005490 |
T |
|
| Q |
114 |
gagacttgttcaacttcatccaaactttcatgtcacatgtttcattccctcacttggatctccctcaactaccacaacatctatccttcaatctcttcca |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |
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| T |
2005489 |
gagacttgttcaacttcatccaaactttcatgtcacatgtttcattccctcacttggatctccctcaactaccacaaaatctatccttcaaactcttcca |
2005390 |
T |
|
| Q |
214 |
tcacacatcaaccatacttttctt |
237 |
Q |
| |
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||| |||||||||||||||||||| |
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| T |
2005389 |
tcaaacatcaaccatacttttctt |
2005366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 11 - 237
Target Start/End: Original strand, 1968043 - 1968269
Alignment:
| Q |
11 |
cattgtgaacttgaccacaagtttccatggagaaaacaattcatattgcagttgttccaggtgttggatatagccatttggtctctattcttcaattctc |
110 |
Q |
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|||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |
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| T |
1968043 |
cattgtgaacttgacctcaaatttccatggagaaaacagttcatattgcagttgttccaggtgttggatatagtcatttggtccctattcttcaattctc |
1968142 |
T |
|
| Q |
111 |
caagagacttgttcaacttcatccaaactttcatgtcacatgtttcattccctcacttggatctccctcaactaccacaacatctatccttcaatctctt |
210 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| | |||||| ||||||||||||| ||||| |
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| T |
1968143 |
caagagacttgttcaacttcatccagactttcatgtcacatgtttcattcccacacttggatctccctcaaatgccacaaaatctatccttcaaactctt |
1968242 |
T |
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| Q |
211 |
ccatcacacatcaaccatacttttctt |
237 |
Q |
| |
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|||||| |||||||||| ||||||||| |
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| T |
1968243 |
ccatcaaacatcaaccacacttttctt |
1968269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 11 - 237
Target Start/End: Complemental strand, 2008972 - 2008746
Alignment:
| Q |
11 |
cattgtgaacttgaccacaagtttccatggagaaaacaattcatattgcagttgttccaggtgttggatatagccatttggtctctattcttcaattctc |
110 |
Q |
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||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
2008972 |
cattgtgaacttgacttcaaatttccatggagaaaacagttcatattgcagttgttccaggtgttggatatagccatttggtccctattcttcaattctc |
2008873 |
T |
|
| Q |
111 |
caagagacttgttcaacttcatccaaactttcatgtcacatgtttcattccctcacttggatctccctcaactaccacaacatctatccttcaatctctt |
210 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||| | |||||| ||||||||||||| ||||| |
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| T |
2008872 |
caagagacttgttcagcttcatccaaactttcatgtcacatgtttcattcccacgcttggatctccctcaaatgccacaaaatctatccttcaaactctt |
2008773 |
T |
|
| Q |
211 |
ccatcacacatcaaccatacttttctt |
237 |
Q |
| |
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|||||| |||||||||| ||||||||| |
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| T |
2008772 |
ccatcaaacatcaaccacacttttctt |
2008746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 37 - 237
Target Start/End: Complemental strand, 2015960 - 2015760
Alignment:
| Q |
37 |
atggagaaaacaattcatattgcagttgttccaggtgttggatatagccatttggtctctattcttcaattctccaagagacttgttcaacttcatccaa |
136 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
2015960 |
atggagaaaacaattcatattgcagttgttccaggtgttggatatagccatttggtctctattcttcaattctccaagagacttgttcagcttcatccaa |
2015861 |
T |
|
| Q |
137 |
actttcatgtcacatgtttcattccctcacttggatctccctcaactaccacaacatctatccttcaatctcttccatcacacatcaaccatacttttct |
236 |
Q |
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|||||||||||||||| ||||||||||||||||| |||| | ||||| ||| | | ||||||||| ||||||||||| |||||| | ||||||||| |
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| T |
2015860 |
actttcatgtcacatgcttcattccctcacttggttctctcccaactgattcaaaaacaatccttcaaactcttccatcaaacatcagctgtacttttct |
2015761 |
T |
|
| Q |
237 |
t |
237 |
Q |
| |
|
| |
|
|
| T |
2015760 |
t |
2015760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 36 - 165
Target Start/End: Complemental strand, 2019344 - 2019215
Alignment:
| Q |
36 |
catggagaaaacaattcatattgcagttgttccaggtgttggatatagccatttggtctctattcttcaattctccaagagacttgttcaacttcatcca |
135 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||| |||| || || | |||||||||||||||||| ||||||||| ||||||||| |
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| T |
2019344 |
catggagaaaacagttcatattgcagttgttccaggtgttggatatggccacttattcccgattcttcaattctccaagctacttgttcagcttcatcca |
2019245 |
T |
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| Q |
136 |
aactttcatgtcacatgtttcattccctca |
165 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
2019244 |
tactttcatgtcacatgtttcattccctca |
2019215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 27 - 175
Target Start/End: Original strand, 1962459 - 1962607
Alignment:
| Q |
27 |
acaagtttccatggagaaaacaattcatattgcagttgttccaggtgttggatatagccatttggtctctattcttcaattctccaagagacttgttcaa |
126 |
Q |
| |
|
|||| ||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||| || || | ||||||||||||||||| ||||||||| |
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| T |
1962459 |
acaaattttcatggagaaaacagttcatattgcagttgttcctggtgttggatatagccacttattcccaattcttcaattctccaaactacttgttcag |
1962558 |
T |
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| Q |
127 |
cttcatccaaactttcatgtcacatgtttcattccctcacttggatctc |
175 |
Q |
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||||||||| |||||||||||||||| ||||||||||||||||| |||| |
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| T |
1962559 |
cttcatccatactttcatgtcacatgcttcattccctcacttggttctc |
1962607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 27 - 153
Target Start/End: Complemental strand, 2013503 - 2013377
Alignment:
| Q |
27 |
acaagtttccatggagaaaacaattcatattgcagttgttccaggtgttggatatagccatttggtctctattcttcaattctccaagagacttgttcaa |
126 |
Q |
| |
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|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| || || || | ||||||||||| || ||| ||||||||| |
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| T |
2013503 |
acaaatttccatggagaaaaaaattcatattgcagttgttccaggtgttggatatagtcacttattcccaattcttcaattttcgaagctacttgttcag |
2013404 |
T |
|
| Q |
127 |
cttcatccaaactttcatgtcacatgt |
153 |
Q |
| |
|
||||||||| ||||||||||||||||| |
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| T |
2013403 |
cttcatccatactttcatgtcacatgt |
2013377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 32 - 109
Target Start/End: Original strand, 1964502 - 1964581
Alignment:
| Q |
32 |
tttccatggagaaaacaattcatattgcagttgttccaggtgttgg--atatagccatttggtctctattcttcaattct |
109 |
Q |
| |
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|||||||||||||||| ||||| ||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||| |
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| T |
1964502 |
tttccatggagaaaaccattcacattgcagttgttccaggtgttgggtatatatccatttagtctctattcttcaattct |
1964581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 36 - 177
Target Start/End: Complemental strand, 2012562 - 2012421
Alignment:
| Q |
36 |
catggagaaaacaattcatattgcagttgttccaggtgttggatatagccatttggtctctattcttcaattctccaagagacttgttcaacttcatcca |
135 |
Q |
| |
|
|||||| ||||||||||| ||||| |||||||||||||| || ||| | || || ||| |||||||||| ||||| ||| |||| | || |||||||| |
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| T |
2012562 |
catggataaaacaattcacattgccgttgttccaggtgtcgggtatggacacttagtccctattcttcatttctcaaagttacttatccagcttcatccg |
2012463 |
T |
|
| Q |
136 |
aactttcatgtcacatgtttcattccctcacttggatctccc |
177 |
Q |
| |
|
|| |||||||||||||| |||||||| ||||||| |||||| |
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| T |
2012462 |
gacattcatgtcacatgtatcattcccacacttggttctccc |
2012421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 14 - 221
Target Start/End: Original strand, 5901625 - 5901832
Alignment:
| Q |
14 |
tgtgaacttgaccacaagtttccatggagaaaacaattcatattgcagttgttccaggtgttggatatagccatttggtctctattcttcaattctccaa |
113 |
Q |
| |
|
||||||||| ||||||| ||| |||||||||||||||||| ||||| ||| ||||||||| | | ||||||||||| |||||||||||| |||||||||| |
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| T |
5901625 |
tgtgaacttaaccacaaattttcatggagaaaacaattcacattgctgttattccaggtgcttggtatagccatttagtctctattcttgaattctccaa |
5901724 |
T |
|
| Q |
114 |
gagacttgttcaacttcatccaaactttcatgtcacatgtttcattccctcacttggatctccctcaactaccacaacatctatccttcaatctcttcca |
213 |
Q |
| |
|
| ||||||||| || |||||| ||||||||||||| || |||||||| |||||||||| ||||||| | || ||| || |||||||| |||||||| |
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| T |
5901725 |
gctacttgttcagctccatccagactttcatgtcacttgcttcattcctacacttggatcaccctcaagtgcctcaaagtcattccttcaaactcttcca |
5901824 |
T |
|
| Q |
214 |
tcacacat |
221 |
Q |
| |
|
||| |||| |
|
|
| T |
5901825 |
tcaaacat |
5901832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 32 - 227
Target Start/End: Original strand, 18189429 - 18189624
Alignment:
| Q |
32 |
tttccatggagaaaacaattcatattgcagttgttccaggtgttggatatagccatttggtctctattcttcaattctccaagagacttgttcaacttca |
131 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||||||||||||| ||| | || || ||| |||||||||||||||| ||| |||| | || ||||| |
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|
| T |
18189429 |
tttccatggataaaacaattcacattgcagttgttccaggtgttgggtatggacacttagtccctattcttcaattctcaaagttacttatccatcttca |
18189528 |
T |
|
| Q |
132 |
tccaaactttcatgtcacatgtttcattccctcacttggatctccctcaactaccacaacatctatccttcaatctcttccatcacacatcaacca |
227 |
Q |
| |
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|||| || |||||| ||||||| |||||| | ||||||| |||||| ||| | || || | | ||||||||| ||||||||||| | |||||||| |
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|
| T |
18189529 |
tccagacattcatgccacatgtatcattcgcacacttggttctcccccaagttcctcagaacccatccttcaaactcttccatcaaatatcaacca |
18189624 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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