View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2017_low_15 (Length: 228)

Name: NF2017_low_15
Description: NF2017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2017_low_15
NF2017_low_15
[»] chr4 (1 HSPs)
chr4 (26-188)||(24412529-24412692)
[»] scaffold0007 (1 HSPs)
scaffold0007 (33-117)||(198913-198996)
[»] chr8 (2 HSPs)
chr8 (46-211)||(376049-376217)
chr8 (29-117)||(411824-411911)
[»] chr5 (3 HSPs)
chr5 (47-117)||(19281575-19281645)
chr5 (26-117)||(1495134-1495224)
chr5 (26-108)||(34063648-34063729)
[»] chr3 (3 HSPs)
chr3 (47-116)||(17766084-17766153)
chr3 (47-116)||(19067404-19067473)
chr3 (57-117)||(36802486-36802546)
[»] chr1 (2 HSPs)
chr1 (26-108)||(19403538-19403619)
chr1 (47-117)||(16801500-16801572)


Alignment Details
Target: chr4 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 26 - 188
Target Start/End: Original strand, 24412529 - 24412692
Alignment:
Q  26 tcgctaaactcaaagaactttaaaaaggactttaattcagtccttaactgtttttggatgatattgtttgtattatcaaaaatcagtgtaaa-aaattat 124  Q
    ||||||||| |||||||||  ||||||||||| |||||||||||||||| ||||| ||| ||||||||||||||| ||||||||| | |||| |||||      
T  24412529 tcgctaaacccaaagaactccaaaaaggacttcaattcagtccttaactattttttgattatattgtttgtattaccaaaaatcattataaataaattgg 24412628  T
Q  125 cactagaaggaggagattttccagttttagcacagatctaatgctctgtgtttgaaaagtggtg 188  Q
    | |||||| || |||||||||||||||||||  |||||||||||| ||||||||||||||||||    
T  24412629 cgctagaaagatgagattttccagttttagcgtagatctaatgctttgtgtttgaaaagtggtg 24412692  T

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Target: scaffold0007 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 33 - 117
Target Start/End: Original strand, 198913 - 198996
Alignment:
Q  33 actcaaagaactttaaaaaggactttaattcagtccttaactgtttttggatgatattgtttgtattatcaaaaatcagtgtaaa 117  Q
    |||||||||||   ||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||    
T  198913 actcaaagaaccccaaaaaggactttaattcagtccttaactg-ttttggataatattgtttgtattaccaaaaatcagtgtaaa 198996  T

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Target: chr8 (Bit Score: 55; Significance: 9e-23; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 46 - 211
Target Start/End: Original strand, 376049 - 376217
Alignment:
Q  46 taaaaaggactttaattcagtccttaactgtttttggatgatattgtttgtattatcaaaaatcagtgtaaa-aaattatcactagaagga-ggagattt 143  Q
    |||||||| ||||||||||||||||||||| |||||||| |||||||||||||   ||||||| |||||||| |||||  |  |||||||| || |||||    
T  376049 taaaaagggctttaattcagtccttaactg-ttttggataatattgtttgtatcgccaaaaattagtgtaaacaaattggcgttagaaggagggggattt 376147  T
Q  144 tccagttttagcacagatctaatgc--tctgtgtttgaaaagtggtgatttaaactctatggctaacagt 211  Q
    |||||||||||| |  |||||||||  | |||||||||||| ||||||||| | || ||||| |||||||    
T  376148 tccagttttagcccgaatctaatgctttatgtgtttgaaaaatggtgatttgatctttatggttaacagt 376217  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 117
Target Start/End: Original strand, 411824 - 411911
Alignment:
Q  29 ctaaactcaaagaactttaaaaaggactttaattcagtccttaactgtttttggatgatattgtttgtattatcaaaaatcagtgtaaa 117  Q
    |||||| ||||||||  |||||| |||||||||||| ||||||  || ||| |||| |||| |||| |||||| |||||||| ||||||    
T  411824 ctaaacccaaagaaccctaaaaaagactttaattcaatccttatatg-tttcggataatatcgtttttattataaaaaatcaatgtaaa 411911  T

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Target: chr5 (Bit Score: 55; Significance: 9e-23; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 47 - 117
Target Start/End: Complemental strand, 19281645 - 19281575
Alignment:
Q  47 aaaaaggactttaattcagtccttaactgtttttggatgatattgtttgtattatcaaaaatcagtgtaaa 117  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| || |||||||||    
T  19281645 aaaaaggactttaattcagtccttaactgtttttggataatattgtttgtattaccaataaccagtgtaaa 19281575  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 26 - 117
Target Start/End: Original strand, 1495134 - 1495224
Alignment:
Q  26 tcgctaaactcaaagaactttaaaaaggactttaattcagtccttaactgtttttggatgatattgtttgtattatcaaaaatcagtgtaaa 117  Q
    |||||||||||||||||| | ||||||||||||||||| || |||||| | |||||||| ||||  |||||||| |||||||||||||||||    
T  1495134 tcgctaaactcaaagaacctcaaaaaggactttaattcggttcttaacag-ttttggataatatcatttgtattgtcaaaaatcagtgtaaa 1495224  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 108
Target Start/End: Original strand, 34063648 - 34063729
Alignment:
Q  26 tcgctaaactcaaagaactttaaaaaggactttaattcagtccttaactgtttttggatgatattgtttgtattatcaaaaat 108  Q
    ||||||||| ||||||||   ||||| ||||||||||||| ||||||||| |||||||| |||| |||||||||| |||||||    
T  34063648 tcgctaaacccaaagaaccccaaaaatgactttaattcagcccttaactg-ttttggataatatcgtttgtattaccaaaaat 34063729  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 47 - 116
Target Start/End: Complemental strand, 17766153 - 17766084
Alignment:
Q  47 aaaaaggactttaattcagtccttaa-ctgtttttggatgatattgtttgtattatcaaaaatcagtgtaa 116  Q
    |||||||||||||||||||||||||| ||||||| |||| ||||||||||||||| |||||||| ||||||    
T  17766153 aaaaaggactttaattcagtccttaaactgtttt-ggataatattgtttgtattaccaaaaatccgtgtaa 17766084  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 47 - 116
Target Start/End: Complemental strand, 19067473 - 19067404
Alignment:
Q  47 aaaaaggactttaattcagtccttaa-ctgtttttggatgatattgtttgtattatcaaaaatcagtgtaa 116  Q
    |||||||||||||||||||||||||| ||||||| |||| ||||||||||||||| |||||||| ||||||    
T  19067473 aaaaaggactttaattcagtccttaaactgtttt-ggataatattgtttgtattaccaaaaatccgtgtaa 19067404  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 117
Target Start/End: Original strand, 36802486 - 36802546
Alignment:
Q  57 ttaattcagtccttaactgtttttggatgatattgtttgtattatcaaaaatcagtgtaaa 117  Q
    |||||||| || ||||||||||||  || ||||||||||||||| ||||||| ||||||||    
T  36802486 ttaattcaatcgttaactgtttttaaataatattgtttgtattaccaaaaattagtgtaaa 36802546  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 108
Target Start/End: Complemental strand, 19403619 - 19403538
Alignment:
Q  26 tcgctaaactcaaagaactttaaaaaggactttaattcagtccttaactgtttttggatgatattgtttgtattatcaaaaat 108  Q
    ||||||||| ||||||||   ||||| ||||||||||||| ||||||||| |||||||| |||| |||||||||| |||||||    
T  19403619 tcgctaaacccaaagaaccccaaaaatgactttaattcagcccttaactg-ttttggataatatcgtttgtattaccaaaaat 19403538  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 117
Target Start/End: Complemental strand, 16801572 - 16801500
Alignment:
Q  47 aaaaaggactttaattcagtccttaac--tgtttttggatgatattgtttgtattatcaaaaatcagtgtaaa 117  Q
    |||||||||||||||||||||||||||  | | || |||| |||||||||||||||  |||||||||||||||    
T  16801572 aaaaaggactttaattcagtccttaactatatattcggataatattgtttgtattactaaaaatcagtgtaaa 16801500  T

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