View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2017_low_2 (Length: 431)

Name: NF2017_low_2
Description: NF2017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2017_low_2
NF2017_low_2
[»] chr7 (7 HSPs)
chr7 (182-431)||(2787119-2787366)
chr7 (19-146)||(2786983-2787109)
chr7 (66-149)||(38372525-38372608)
chr7 (94-149)||(41677369-41677424)
chr7 (95-149)||(34922927-34922981)
chr7 (90-146)||(12473197-12473253)
chr7 (104-140)||(21249161-21249197)
[»] chr5 (13 HSPs)
chr5 (303-429)||(19578230-19578356)
chr5 (64-140)||(11163314-11163390)
chr5 (62-146)||(26002960-26003044)
chr5 (80-149)||(29922225-29922294)
chr5 (72-152)||(17128251-17128331)
chr5 (72-144)||(27981953-27982025)
chr5 (62-144)||(16721990-16722072)
chr5 (74-152)||(24030190-24030268)
chr5 (108-146)||(36106778-36106816)
chr5 (104-152)||(7984110-7984158)
chr5 (80-149)||(12467245-12467314)
chr5 (81-149)||(1473338-1473406)
chr5 (66-146)||(15413959-15414039)
[»] chr3 (12 HSPs)
chr3 (66-139)||(21296733-21296806)
chr3 (62-141)||(23555447-23555526)
chr3 (80-150)||(24842142-24842212)
chr3 (90-131)||(29830824-29830865)
chr3 (66-149)||(22809229-22809313)
chr3 (66-134)||(50022007-50022075)
chr3 (102-149)||(5129851-5129898)
chr3 (65-140)||(10272088-10272163)
chr3 (90-144)||(28623275-28623329)
chr3 (90-140)||(30499957-30500007)
chr3 (106-152)||(42956212-42956258)
chr3 (68-124)||(47520426-47520482)
[»] chr8 (9 HSPs)
chr8 (62-148)||(13131393-13131479)
chr8 (102-149)||(1089016-1089063)
chr8 (62-121)||(2019713-2019772)
chr8 (85-140)||(11988183-11988238)
chr8 (80-147)||(16972395-16972462)
chr8 (67-149)||(32131408-32131490)
chr8 (103-152)||(13265488-13265537)
chr8 (82-146)||(19327850-19327914)
chr8 (64-140)||(42102072-42102148)
[»] chr4 (15 HSPs)
chr4 (64-146)||(18424316-18424398)
chr4 (103-146)||(46650275-46650318)
chr4 (66-140)||(29877606-29877680)
chr4 (71-152)||(43740108-43740189)
chr4 (96-144)||(22303093-22303141)
chr4 (64-144)||(47202791-47202871)
chr4 (64-120)||(48721942-48721998)
chr4 (66-149)||(23297405-23297488)
chr4 (66-140)||(43415334-43415408)
chr4 (90-144)||(46176019-46176073)
chr4 (64-149)||(948037-948122)
chr4 (62-131)||(10794963-10795032)
chr4 (73-146)||(29996678-29996751)
chr4 (68-129)||(31022371-31022432)
chr4 (80-148)||(8130469-8130537)
[»] chr6 (6 HSPs)
chr6 (64-144)||(32615455-32615535)
chr6 (65-142)||(21871193-21871269)
chr6 (80-140)||(28758366-28758426)
chr6 (90-140)||(4272373-4272423)
chr6 (90-140)||(22816630-22816680)
chr6 (64-149)||(21891374-21891459)
[»] chr2 (5 HSPs)
chr2 (72-149)||(33321439-33321516)
chr2 (64-149)||(4090454-4090539)
chr2 (95-140)||(12683651-12683696)
chr2 (66-123)||(17797329-17797386)
chr2 (90-146)||(34913429-34913485)
[»] chr1 (8 HSPs)
chr1 (62-131)||(16225472-16225541)
chr1 (80-152)||(26435208-26435279)
chr1 (66-149)||(1265729-1265812)
chr1 (65-140)||(35897668-35897743)
chr1 (104-151)||(41003392-41003439)
chr1 (65-146)||(15631870-15631951)
chr1 (72-149)||(35590103-35590180)
chr1 (67-152)||(39941343-39941423)
[»] scaffold0100 (1 HSPs)
scaffold0100 (90-144)||(38493-38547)
[»] scaffold0015 (1 HSPs)
scaffold0015 (63-129)||(48535-48601)


Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-122; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 182 - 431
Target Start/End: Original strand, 2787119 - 2787366
Alignment:
Q  182 gcatacaaaaaatatcataaaatattaaatcacataaacttcacattgattattttgatacaaacgtcaatggataatataatcgaccaagaaaagtaca 281  Q
    |||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  2787119 gcatacgaaaaatatcacaaaatattaaattacataaacttcacattgattattttgatacaaacgtcaatggataatataattgaccaagaaaagtaca 2787218  T
Q  282 aacaaatatacaaattaaatcaaacatatatactaaaaaattaggcagacatgcatccaattccacgccttgaagttggaaaaataagaaacaaaccgct 381  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2787219 aacaaatatacaaattaaatcaaacatat--actaaaaaattaggcagacatgcatccaattccacgccttgaagttggaaaaataagaaacaaaccgct 2787316  T
Q  382 acaaacaattccaaccatcaatggaaaactctccataacttgatccattt 431  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2787317 acaaacaattccaaccatcaatggaaaactctccataacttgatccattt 2787366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 19 - 146
Target Start/End: Original strand, 2786983 - 2787109
Alignment:
Q  19 aacacgcaagttccaatcaaatccattttgtaaataagtaaccgtccgtttgaattgactaattttttagattatacaaaacattttatgcaaataaata 118  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  2786983 aacactcaagttccaatcaaatccattttgtaaataagtaaccgtccgtttgaattgacttattttttaga-tatacaaaacattttatgcaaataaata 2787081  T
Q  119 agttttcatgtatgattcataaatttgt 146  Q
    ||||||||||||||||||||||||||||    
T  2787082 agttttcatgtatgattcataaatttgt 2787109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 66 - 149
Target Start/End: Original strand, 38372525 - 38372608
Alignment:
Q  66 gtttgaattgactaattttttagattatacaaaacattttatgcaaataaataagttttcatgtatgattcataaatttgtcaa 149  Q
    ||||| ||||||| |||||| || |||| |||||||  ||||||||||||||||| | | |||||| |||||||| ||||||||    
T  38372525 gtttggattgacttatttttgagcttatgcaaaacagcttatgcaaataaataagctcttatgtattattcataagtttgtcaa 38372608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 94 - 149
Target Start/End: Original strand, 41677369 - 41677424
Alignment:
Q  94 acaaaacattttatgcaaataaataagttttcatgtatgattcataaatttgtcaa 149  Q
    ||||||||  |||||||||||||||| |||| |||||| |||||||| ||||||||    
T  41677369 acaaaacaacttatgcaaataaataaatttttatgtattattcataagtttgtcaa 41677424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 95 - 149
Target Start/End: Original strand, 34922927 - 34922981
Alignment:
Q  95 caaaacattttatgcaaataaataagttttcatgtatgattcataaatttgtcaa 149  Q
    |||||||  ||||||||||||||||| ||| |||||| |||||||| ||||||||    
T  34922927 caaaacaacttatgcaaataaataagcttttatgtattattcataagtttgtcaa 34922981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 146
Target Start/End: Original strand, 12473197 - 12473253
Alignment:
Q  90 ttatacaaaacattttatgcaaataaataagttttcatgtatgattcataaatttgt 146  Q
    |||| |||||||  ||||||||| ||||||||||| |||||| |||||||| |||||    
T  12473197 ttatgcaaaacaacttatgcaaacaaataagtttttatgtattattcataagtttgt 12473253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 104 - 140
Target Start/End: Original strand, 21249161 - 21249197
Alignment:
Q  104 ttatgcaaataaataagttttcatgtatgattcataa 140  Q
    ||||||||||||||||||||| |||||| ||||||||    
T  21249161 ttatgcaaataaataagtttttatgtattattcataa 21249197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 95; Significance: 2e-46; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 303 - 429
Target Start/End: Complemental strand, 19578356 - 19578230
Alignment:
Q  303 aaacatatatactaaaaaattaggcagacatgcatccaattccacgccttgaagttggaaaaataagaaacaaaccgctacaaacaattccaaccatcaa 402  Q
    ||||||||||||||| |||||||| ||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||  ||||||||||||||    
T  19578356 aaacatatatactaataaattaggaagacatgcatccaattccatgccttgaagtaggaaaaataaggaacaaaccgctacaaattattccaaccatcaa 19578257  T
Q  403 tggaaaactctccataacttgatccat 429  Q
     ||||||||||||||||||||||||||    
T  19578256 aggaaaactctccataacttgatccat 19578230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 64 - 140
Target Start/End: Complemental strand, 11163390 - 11163314
Alignment:
Q  64 ccgtttgaattgactaattttttagattatacaaaacattttatgcaaataaataagttttcatgtatgattcataa 140  Q
    ||||||| ||||||| ||||||||| |||| |||||||  ||||| |||| |||||||||| |||||||||||||||    
T  11163390 ccgtttggattgacttattttttagcttatgcaaaacagcttatgtaaatcaataagtttttatgtatgattcataa 11163314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 62 - 146
Target Start/End: Original strand, 26002960 - 26003044
Alignment:
Q  62 gtccgtttgaattgactaattttttagattatacaaaacattttatgcaaataaataagttttcatgtatgattcataaatttgt 146  Q
    ||||||||| ||| ||| |||||  || |||||||||||| |||||||||||||||||||||| |||||| ||| |||| |||||    
T  26002960 gtccgtttggattaacttattttagagcttatacaaaacagtttatgcaaataaataagtttttatgtattatttataagtttgt 26003044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 80 - 149
Target Start/End: Complemental strand, 29922294 - 29922225
Alignment:
Q  80 attttttagattatacaaaacattttatgcaaataaataagttttcatgtatgattcataaatttgtcaa 149  Q
    |||||| || |||| ||||||| |||||||||||||||||||||| |||||| ||||||||  |||||||    
T  29922294 atttttgagcttatgcaaaacagtttatgcaaataaataagtttttatgtattattcataagcttgtcaa 29922225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 72 - 152
Target Start/End: Original strand, 17128251 - 17128331
Alignment:
Q  72 attgactaattttttagattatacaaaacattttatgcaaataaataagttttcatgtatgattcataaatttgtcaaagt 152  Q
    ||||||| |||||| || |||| |||||||  ||||||||||||||||| ||| |||||| ||||||||| || |||||||    
T  17128251 attgacttatttttgagcttatgcaaaacagcttatgcaaataaataagcttttatgtattattcataaacttatcaaagt 17128331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 72 - 144
Target Start/End: Complemental strand, 27982025 - 27981953
Alignment:
Q  72 attgactaattttttagattatacaaaacattttatgcaaataaataagttttcatgtatgattcataaattt 144  Q
    ||||||| |||||| |  ||||||||||||| ||||| |||||||||| |||| |||||| ||||||||||||    
T  27982025 attgacttatttttgaacttatacaaaacatcttatgaaaataaataaatttttatgtattattcataaattt 27981953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 62 - 144
Target Start/End: Original strand, 16721990 - 16722072
Alignment:
Q  62 gtccgtttgaattgactaattttttagattatacaaaacattttatgcaaataaataagttttcatgtatgattcataaattt 144  Q
    |||||||||||||  || |||||  || ||||| |||| | |||||||||||||||||||||| |||||| ||| ||||||||    
T  16721990 gtccgtttgaattagcttattttaaagcttatagaaaataatttatgcaaataaataagtttttatgtattatttataaattt 16722072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 74 - 152
Target Start/End: Original strand, 24030190 - 24030268
Alignment:
Q  74 tgactaattttttagattatacaaaacattttatgcaaataaataagttttcatgtatgattcataaatttgtcaaagt 152  Q
    ||||| |||||| || ||||||||||||  |||| |||||||||||| ||| |||||| ||||||||  ||||||||||    
T  24030190 tgacttatttttaagcttatacaaaacagcttatccaaataaataagcttttatgtattattcataagcttgtcaaagt 24030268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 108 - 146
Target Start/End: Complemental strand, 36106816 - 36106778
Alignment:
Q  108 gcaaataaataagttttcatgtatgattcataaatttgt 146  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  36106816 gcaaataaataagtttttatgtatgattcataaatttgt 36106778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 152
Target Start/End: Original strand, 7984110 - 7984158
Alignment:
Q  104 ttatgcaaataaataagttttcatgtatgattcataaatttgtcaaagt 152  Q
    |||||||||||| |||||||| |||||| |||||||| |||||||||||    
T  7984110 ttatgcaaataactaagtttttatgtattattcataagtttgtcaaagt 7984158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 149
Target Start/End: Original strand, 12467245 - 12467314
Alignment:
Q  80 attttttagattatacaaaacattttatgcaaataaataagttttcatgtatgattcataaatttgtcaa 149  Q
    |||||| || |||| ||||| || ||||||||||||||||| ||| |||||| ||||||||  |||||||    
T  12467245 atttttgagtttattcaaaaaatgttatgcaaataaataagcttttatgtattattcataagcttgtcaa 12467314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 81 - 149
Target Start/End: Original strand, 1473338 - 1473406
Alignment:
Q  81 ttttttagattatacaaaacattttatgcaaataaataagttttcatgtatgattcataaatttgtcaa 149  Q
    ||||| || ||||||| ||||  ||||||||||||||||| ||| |||||| ||||||||  |||||||    
T  1473338 tttttgagcttatacagaacaacttatgcaaataaataagcttttatgtattattcataagcttgtcaa 1473406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 66 - 146
Target Start/End: Original strand, 15413959 - 15414039
Alignment:
Q  66 gtttgaattgactaattttttagattatacaaaacattttatgcaaataaataagttttcatgtatgattcataaatttgt 146  Q
    ||||| ||||||| |||||  || |||| |||||||  |||||||||||||||||| || |||||| ||| |||| |||||    
T  15413959 gtttggattgacttattttagagcttatgcaaaacagcttatgcaaataaataagtattaatgtattattgataagtttgt 15414039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 66 - 139
Target Start/End: Original strand, 21296733 - 21296806
Alignment:
Q  66 gtttgaattgactaattttttagattatacaaaacattttatgcaaataaataagttttcatgtatgattcata 139  Q
    ||||| ||||||| |||||| ||||||| ||||||| |||||||||||||||||||||| || ||| |||||||    
T  21296733 gtttggattgacttatttttgagattatgcaaaacaatttatgcaaataaataagtttttatctattattcata 21296806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 62 - 141
Target Start/End: Original strand, 23555447 - 23555526
Alignment:
Q  62 gtccgtttgaattgactaattttttagattatacaaaacattttatgcaaataaataagttttcatgtatgattcataaa 141  Q
    ||||||||| |||| || |||||| || |||||| ||||| |||||||||||||||||| ||| |||||| |||| ||||    
T  23555447 gtccgtttggattggcttatttttgagcttatacgaaacagtttatgcaaataaataagcttttatgtattattcgtaaa 23555526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 150
Target Start/End: Complemental strand, 24842212 - 24842142
Alignment:
Q  80 attttttagattatacaaaacattttatgcaaataaataagttttcatgtatgattcataaatttgtcaaa 150  Q
    |||||| || ||||| ||||||  |||||||||||||||| |||| |||||| |||||||| |||||||||    
T  24842212 atttttaaggttataaaaaacaacttatgcaaataaataaatttttatgtattattcataagtttgtcaaa 24842142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 90 - 131
Target Start/End: Complemental strand, 29830865 - 29830824
Alignment:
Q  90 ttatacaaaacattttatgcaaataaataagttttcatgtat 131  Q
    |||||||||||| |||||||||||||||||||||| ||||||    
T  29830865 ttatacaaaacagtttatgcaaataaataagtttttatgtat 29830824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 149
Target Start/End: Complemental strand, 22809313 - 22809229
Alignment:
Q  66 gtttgaattgactaattttttagattatacaaaacattttatgcaaataaataag-ttttcatgtatgattcataaatttgtcaa 149  Q
    ||||||||||||| |||||| || |||| |||||||  ||||||||||||||||| |||| || ||| ||||||||  |||||||    
T  22809313 gtttgaattgacttatttttgaggttatgcaaaacagcttatgcaaataaataagctttttatatattattcataagcttgtcaa 22809229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 134
Target Start/End: Complemental strand, 50022075 - 50022007
Alignment:
Q  66 gtttgaattgactaattttttagattatacaaaacattttatgcaaataaataagttttcatgtatgat 134  Q
    ||||| |||| || |||||  ||||||| ||||||| |||||||||||||||||| ||| |||||||||    
T  50022075 gtttggattggcttattttagagattatgcaaaacagtttatgcaaataaataagctttgatgtatgat 50022007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 149
Target Start/End: Complemental strand, 5129898 - 5129851
Alignment:
Q  102 ttttatgcaaataaataagttttcatgtatgattcataaatttgtcaa 149  Q
    ||||||||||||||||||||||| |||||| ||||||||  |||||||    
T  5129898 ttttatgcaaataaataagttttaatgtattattcataagcttgtcaa 5129851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 140
Target Start/End: Original strand, 10272088 - 10272163
Alignment:
Q  65 cgtttgaattgactaattttttagattatacaaaacattttatgcaaataaataagttttcatgtatgattcataa 140  Q
    |||||| ||||||| ||||||||| |||| |||||||  | ||||||||||||||  ||| |||||| ||||||||    
T  10272088 cgtttggattgacttattttttagcttatgcaaaacaactcatgcaaataaataaacttttatgtattattcataa 10272163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 90 - 144
Target Start/End: Complemental strand, 28623329 - 28623275
Alignment:
Q  90 ttatacaaaacattttatgcaaataaataagttttcatgtatgattcataaattt 144  Q
    ||||| ||||||  ||||||||||||||||||||| |||||| ||| ||||||||    
T  28623329 ttatagaaaacaacttatgcaaataaataagtttttatgtattatttataaattt 28623275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 90 - 140
Target Start/End: Original strand, 30499957 - 30500007
Alignment:
Q  90 ttatacaaaacattttatgcaaataaataagttttcatgtatgattcataa 140  Q
    |||||||||||| ||||||||||||||||| |||| |||||| ||| ||||    
T  30499957 ttatacaaaacagtttatgcaaataaataaatttttatgtattatttataa 30500007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 152
Target Start/End: Complemental strand, 42956258 - 42956212
Alignment:
Q  106 atgcaaataaataagttttcatgtatgattcataaatttgtcaaagt 152  Q
    ||||||||||||||||||| |||||| ||||||||| ||||| ||||    
T  42956258 atgcaaataaataagtttttatgtattattcataaacttgtcgaagt 42956212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 124
Target Start/End: Original strand, 47520426 - 47520482
Alignment:
Q  68 ttgaattgactaattttttagattatacaaaacattttatgcaaataaataagtttt 124  Q
    ||||||||||| |||||| || ||||| |||| | |||||||| |||||||||||||    
T  47520426 ttgaattgacttatttttgagtttataaaaaataatttatgcatataaataagtttt 47520482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 62 - 148
Target Start/End: Original strand, 13131393 - 13131479
Alignment:
Q  62 gtccgtttgaattgactaattttttagattatacaaaacattttatgcaaataaataagttttcatgtatgattcataaatttgtca 148  Q
    ||||||||| |||  || ||||||||| |||| |||||||  ||||||||||||||||| ||| |||||| |||||||| |||||||    
T  13131393 gtccgtttggatttgcttattttttagcttatgcaaaacaaattatgcaaataaataagcttttatgtattattcataagtttgtca 13131479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 149
Target Start/End: Original strand, 1089016 - 1089063
Alignment:
Q  102 ttttatgcaaataaataagttttcatgtatgattcataaatttgtcaa 149  Q
    ||||||||||||||||||||||| |||||| ||||||||  |||||||    
T  1089016 ttttatgcaaataaataagttttaatgtattattcataagcttgtcaa 1089063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 62 - 121
Target Start/End: Complemental strand, 2019772 - 2019713
Alignment:
Q  62 gtccgtttgaattgactaattttttagattatacaaaacattttatgcaaataaataagt 121  Q
    ||||||||| ||||||| |||||  || |||| |||||||| ||||||||||||||||||    
T  2019772 gtccgtttggattgacttattttagagcttatgcaaaacatcttatgcaaataaataagt 2019713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 85 - 140
Target Start/End: Original strand, 11988183 - 11988238
Alignment:
Q  85 ttagattatacaaaacattttatgcaaataaataagttttcatgtatgattcataa 140  Q
    |||| ||||| |||||| |||||||||||||||||||||| |||||| ||| ||||    
T  11988183 ttagcttatataaaacaatttatgcaaataaataagtttttatgtattatttataa 11988238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 80 - 147
Target Start/End: Complemental strand, 16972462 - 16972395
Alignment:
Q  80 attttttagattatacaaaacattttatgcaaataaataagttttcatgtatgattcataaatttgtc 147  Q
    ||||||||| |||| ||||||| ||| |||||||||||||| ||  |||||| |||||||| ||||||    
T  16972462 attttttagcttatgcaaaacaatttttgcaaataaataagcttgtatgtattattcataagtttgtc 16972395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 67 - 149
Target Start/End: Original strand, 32131408 - 32131490
Alignment:
Q  67 tttgaattgactaattttttagattatacaaaacattttatgcaaataaataagttttcatgtatgattcataaatttgtcaa 149  Q
    |||| ||||||| |||||| || |||| |||||||  ||||||||||||||||| ||| ||| || |||| ||| ||||||||    
T  32131408 tttggattgacttatttttgagcttatgcaaaacagcttatgcaaataaataagcttttatgcattattcctaagtttgtcaa 32131490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 152
Target Start/End: Original strand, 13265488 - 13265537
Alignment:
Q  103 tttatgcaaataaataagttttcatgtatgattcataaatttgtcaaagt 152  Q
    |||||||||||||||||| ||| |||||| ||||||||  ||||||||||    
T  13265488 tttatgcaaataaataagcttttatgtattattcataagcttgtcaaagt 13265537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 82 - 146
Target Start/End: Original strand, 19327850 - 19327914
Alignment:
Q  82 tttttagattatacaaaacattttatgcaaataaataagttttcatgtatgattcataaatttgt 146  Q
    ||||||| |||| |||||||  ||||||||||||||||  ||| |||||| |||||||| |||||    
T  19327850 tttttagcttatgcaaaacaacttatgcaaataaataaacttttatgtattattcataagtttgt 19327914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 140
Target Start/End: Original strand, 42102072 - 42102148
Alignment:
Q  64 ccgtttgaattgactaattttttagattatacaaaacattttatgcaaataaataagttttcatgtatgattcataa 140  Q
    ||||||| ||| ||| |||||  || ||||| ||||||  ||||||||||||||||||||| |||||| ||| ||||    
T  42102072 ccgtttggattaacttattttagagcttatataaaacagcttatgcaaataaataagtttttatgtattatttataa 42102148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 64 - 146
Target Start/End: Complemental strand, 18424398 - 18424316
Alignment:
Q  64 ccgtttgaattgactaattttttagattatacaaaacattttatgcaaataaataagttttcatgtatgattcataaatttgt 146  Q
    ||||||||||||||  |||||| || |||| ||||||| ||||| |||||||||||| ||| |||||| ||||||||| ||||    
T  18424398 ccgtttgaattgacatatttttgagcttatgcaaaacaatttatacaaataaataagcttttatgtattattcataaacttgt 18424316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 103 - 146
Target Start/End: Original strand, 46650275 - 46650318
Alignment:
Q  103 tttatgcaaataaataagttttcatgtatgattcataaatttgt 146  Q
    |||||||||||||||||| |||||||||| ||||||||||||||    
T  46650275 tttatgcaaataaataagctttcatgtattattcataaatttgt 46650318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 66 - 140
Target Start/End: Original strand, 29877606 - 29877680
Alignment:
Q  66 gtttgaattgactaattttttagattatacaaaacattttatgcaaataaataagttttcatgtatgattcataa 140  Q
    ||||| |||| || |||||| || |||| ||||||| |||||||||||||||||| ||| |||||| ||||||||    
T  29877606 gtttggattggcttatttttgagcttatgcaaaacaatttatgcaaataaataagcttttatgtattattcataa 29877680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 71 - 152
Target Start/End: Complemental strand, 43740189 - 43740108
Alignment:
Q  71 aattgactaattttttagattatacaaaacattttatgcaaataaataagttttcatgtatgattcataaatttgtcaaagt 152  Q
    |||||||| |||||| |  |||||||||||| |||||| ||||||||||||||| |  ||| ||||||||| ||||| ||||    
T  43740189 aattgacttatttttaaatttatacaaaacaatttatgaaaataaataagtttttacatattattcataaacttgtctaagt 43740108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 144
Target Start/End: Original strand, 22303093 - 22303141
Alignment:
Q  96 aaaacattttatgcaaataaataagttttcatgtatgattcataaattt 144  Q
    |||||| |||||||||||||||||||||| |||||| ||| ||||||||    
T  22303093 aaaacagtttatgcaaataaataagtttttatgtattatttataaattt 22303141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 144
Target Start/End: Original strand, 47202791 - 47202871
Alignment:
Q  64 ccgtttgaattgactaattttttagattatacaaaacattttatgcaaataaataagttttcatgtatgattcataaattt 144  Q
    ||||||| ||| ||| ||||| ||| ||||| ||||||  ||||||||||||||||||||| |||||| | | ||||||||    
T  47202791 ccgtttggattaacttattttatagcttatataaaacagcttatgcaaataaataagtttttatgtattacttataaattt 47202871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 120
Target Start/End: Complemental strand, 48721998 - 48721942
Alignment:
Q  64 ccgtttgaattgactaattttttagattatacaaaacattttatgcaaataaataag 120  Q
    ||||||||||||||| ||||||||| ||||| |||| | ||||| ||||||||||||    
T  48721998 ccgtttgaattgacttattttttagcttataaaaaataatttatacaaataaataag 48721942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 66 - 149
Target Start/End: Original strand, 23297405 - 23297488
Alignment:
Q  66 gtttgaattgactaattttttagattatacaaaacattttatgcaaataaataagttttcatgtatgattcataaatttgtcaa 149  Q
    ||||| |||| || |||||| || |||| ||||| |  ||||||||||||||||| ||| |||||| |||||||| ||||||||    
T  23297405 gtttggattggcttatttttgagcttatgcaaaatagcttatgcaaataaataagcttttatgtattattcataagtttgtcaa 23297488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 140
Target Start/End: Complemental strand, 43415408 - 43415334
Alignment:
Q  66 gtttgaattgactaattttttagattatacaaaacattttatgcaaataaataagttttcatgtatgattcataa 140  Q
    ||||||||||||| |||||| || |||   ||||||  || |||||||||||||||||| |||||| ||||||||    
T  43415408 gtttgaattgacttatttttgagcttaagtaaaacaacttctgcaaataaataagtttttatgtattattcataa 43415334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 90 - 144
Target Start/End: Complemental strand, 46176073 - 46176019
Alignment:
Q  90 ttatacaaaacattttatgcaaataaataagttttcatgtatgattcataaattt 144  Q
    ||||| ||||||  ||||||||||||||||||||| |||||| ||| ||||||||    
T  46176073 ttatataaaacagcttatgcaaataaataagtttttatgtattatttataaattt 46176019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 149
Target Start/End: Original strand, 948037 - 948122
Alignment:
Q  64 ccgtttgaattgactaattttttagattatacaaaacattttatgcaaataaataagttttcatgtatgattcataaatttgtcaa 149  Q
    ||||||| | ||||| | ||||||| |||| ||||| |  ||||| ||||||||||| ||| |||||| |||||||| ||||||||    
T  948037 ccgtttggaatgacttactttttagcttatgcaaaatagcttatgaaaataaataagcttttatgtattattcataactttgtcaa 948122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 131
Target Start/End: Complemental strand, 10795032 - 10794963
Alignment:
Q  62 gtccgtttgaattgactaattttttagattatacaaaacattttatgcaaataaataagttttcatgtat 131  Q
    ||||||||||||||||| |||||  || |||| |||||||  || || ||||||||||||||| ||||||    
T  10795032 gtccgtttgaattgacttattttagagcttatgcaaaacagcttgtgtaaataaataagtttttatgtat 10794963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 146
Target Start/End: Complemental strand, 29996751 - 29996678
Alignment:
Q  73 ttgactaattttttagattatacaaaacattttatgcaaataaataagttttcatgtatgattcataaatttgt 146  Q
    |||||| |||||| || || | ||||||| |||||||||||||||||| ||| || ||| |||||||| |||||    
T  29996751 ttgacttatttttgagtttttgcaaaacaatttatgcaaataaataagcttttatatattattcataagtttgt 29996678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 129
Target Start/End: Original strand, 31022371 - 31022432
Alignment:
Q  68 ttgaattgactaattttttagattatacaaaacattttatgcaaataaataagttttcatgt 129  Q
    |||||||| || |||||| || |||| |||||||| | ||||||||||||||||||| ||||    
T  31022371 ttgaattgtcttatttttgagcttatgcaaaacatctcatgcaaataaataagtttttatgt 31022432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 148
Target Start/End: Original strand, 8130469 - 8130537
Alignment:
Q  80 attttttagattatacaaaacattttatgcaaataaataagttttcatgtatgattcataaatttgtca 148  Q
    |||||||||  ||| |||||||  ||||||||||||||||| ||| ||| || |||||||| |||||||    
T  8130469 attttttagcatatgcaaaacagcttatgcaaataaataagcttttatgcattattcataagtttgtca 8130537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 64 - 144
Target Start/End: Complemental strand, 32615535 - 32615455
Alignment:
Q  64 ccgtttgaattgactaattttttagattatacaaaacattttatgcaaataaataagttttcatgtatgattcataaattt 144  Q
    ||||||| ||| ||| ||||| ||| ||||| ||||||  ||||||||||||||||||||| |||||| ||| ||||||||    
T  32615535 ccgtttggattaacttattttatagcttatataaaacagcttatgcaaataaataagtttttatgtattatttataaattt 32615455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 65 - 142
Target Start/End: Original strand, 21871193 - 21871269
Alignment:
Q  65 cgtttgaattgactaattttttagattatacaaaacattttatgcaaataaataagttttcatgtatgattcataaat 142  Q
    |||||| ||||||| ||||||||| ||||  |||| | ||||| |||||||||||||||| |||| ||||||||||||    
T  21871193 cgtttggattgacttattttttagcttatgaaaaatagtttatacaaataaataagtttttatgt-tgattcataaat 21871269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 140
Target Start/End: Complemental strand, 28758426 - 28758366
Alignment:
Q  80 attttttagattatacaaaacattttatgcaaataaataagttttcatgtatgattcataa 140  Q
    |||||||||  |||||| |||| ||||||||||||||||| |||| |||||| ||||||||    
T  28758426 attttttagtctatacagaacagtttatgcaaataaataaatttttatgtattattcataa 28758366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 90 - 140
Target Start/End: Original strand, 4272373 - 4272423
Alignment:
Q  90 ttatacaaaacattttatgcaaataaataagttttcatgtatgattcataa 140  Q
    |||||||||||| ||||||||||||||||| |||| |||||| || |||||    
T  4272373 ttatacaaaacaatttatgcaaataaataactttttatgtattatacataa 4272423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 90 - 140
Target Start/End: Complemental strand, 22816680 - 22816630
Alignment:
Q  90 ttatacaaaacattttatgcaaataaataagttttcatgtatgattcataa 140  Q
    ||||| |||||| |||||||||||||||||||||| |||||  ||||||||    
T  22816680 ttataaaaaacaatttatgcaaataaataagtttttatgtaatattcataa 22816630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 149
Target Start/End: Complemental strand, 21891459 - 21891374
Alignment:
Q  64 ccgtttgaattgactaattttttagattatacaaaacattttatgcaaataaataagttttcatgtatgattcataaatttgtcaa 149  Q
    ||||||| ||||| |||||||| || |||| || || |  ||||||||||||||||||||| || ||| ||||||||  |||||||    
T  21891459 ccgtttggattgattaatttttgagcttatgcagaatagcttatgcaaataaataagttttgatatattattcataagcttgtcaa 21891374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 72 - 149
Target Start/End: Complemental strand, 33321516 - 33321439
Alignment:
Q  72 attgactaattttttagattatacaaaacattttatgcaaataaataagttttcatgtatgattcataaatttgtcaa 149  Q
    ||||||| ||||||||| |||| |||||||  |||||||||||| |||||||| |||||| | ||||||  |||||||    
T  33321516 attgacttattttttagcttatgcaaaacaacttatgcaaataattaagtttttatgtattactcataagcttgtcaa 33321439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 149
Target Start/End: Original strand, 4090454 - 4090539
Alignment:
Q  64 ccgtttgaattgactaattttttagattatacaaaacattttatgcaaataaataagttttcatgtatgattcataaatttgtcaa 149  Q
    |||| ||||||| || |||||| || |||| |||||||  ||||||||||||||||  ||| |||||| ||||||||  |||||||    
T  4090454 ccgtctgaattggcttatttttgagcttatgcaaaacagcttatgcaaataaataaactttgatgtattattcataatcttgtcaa 4090539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 140
Target Start/End: Complemental strand, 12683696 - 12683651
Alignment:
Q  95 caaaacattttatgcaaataaataagttttcatgtatgattcataa 140  Q
    |||||||  ||||||||||||||||||||| |||||| ||||||||    
T  12683696 caaaacagattatgcaaataaataagttttaatgtattattcataa 12683651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 123
Target Start/End: Complemental strand, 17797386 - 17797329
Alignment:
Q  66 gtttgaattgactaattttttagattatacaaaacattttatgcaaataaataagttt 123  Q
    ||||| ||||| | ||||||||  |||| ||||||| |||||||||||||||||||||    
T  17797386 gtttggattgatttattttttaacttatgcaaaacagtttatgcaaataaataagttt 17797329  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 146
Target Start/End: Complemental strand, 34913485 - 34913429
Alignment:
Q  90 ttatacaaaacattttatgcaaataaataagttttcatgtatgattcataaatttgt 146  Q
    |||| |||||||  ||||||||||||||||| ||| |||||| |||||||| |||||    
T  34913485 ttatgcaaaacagcttatgcaaataaataagcttttatgtattattcataagtttgt 34913429  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 62 - 131
Target Start/End: Original strand, 16225472 - 16225541
Alignment:
Q  62 gtccgtttgaattgactaattttttagattatacaaaacattttatgcaaataaataagttttcatgtat 131  Q
    ||||||||| ||||||| |||||  || |||| ||||||| |||||| ||||||||||||||| ||||||    
T  16225472 gtccgtttggattgacttattttagagcttatgcaaaacagtttatgtaaataaataagtttttatgtat 16225541  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 152
Target Start/End: Complemental strand, 26435279 - 26435208
Alignment:
Q  80 attttttagattatacaaaacattttatgcaaataaataagttttcatgtatgattcataaatttgtcaaagt 152  Q
    |||||| || ||||||||||||  ||||||||||||||||||||| |||||| |||  ||| |||||||||||    
T  26435279 atttttgagcttatacaaaacagcttatgcaaataaataagtttt-atgtattatttttaagtttgtcaaagt 26435208  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 66 - 149
Target Start/End: Complemental strand, 1265812 - 1265729
Alignment:
Q  66 gtttgaattgactaattttttagattatacaaaacattttatgcaaataaataagttttcatgtatgattcataaatttgtcaa 149  Q
    ||||||||||||| |||||| || |||| |||||||  |||| |||| | ||||| ||| |||||| |||||||| ||||||||    
T  1265812 gtttgaattgacttatttttgagcttatgcaaaacaacttatacaaacagataagattttatgtattattcataattttgtcaa 1265729  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 140
Target Start/End: Complemental strand, 35897743 - 35897668
Alignment:
Q  65 cgtttgaattgactaattttttagattatacaaaacattttatgcaaataaataagttttcatgtatgattcataa 140  Q
    |||||| ||||| | |||||| || |||| |||||||  ||||||||||||||||||||| || ||| ||||||||    
T  35897743 cgtttggattgatttatttttaaggttatgcaaaacaacttatgcaaataaataagtttttatttattattcataa 35897668  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 151
Target Start/End: Original strand, 41003392 - 41003439
Alignment:
Q  104 ttatgcaaataaataagttttcatgtatgattcataaatttgtcaaag 151  Q
    ||||||||||||||||||||| |||||| ||| |||| ||||||||||    
T  41003392 ttatgcaaataaataagtttttatgtattatttataagtttgtcaaag 41003439  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 146
Target Start/End: Original strand, 15631870 - 15631951
Alignment:
Q  65 cgtttgaattgactaattttttagattatacaaaacattttatgcaaataaataagttttcatgtatgattcataaatttgt 146  Q
    |||||||||| | | |||||  || ||||||||||||  |||| |||||||||||||||| |||||| ||| |||| |||||    
T  15631870 cgtttgaattaatttattttagagcttatacaaaacaacttatacaaataaataagtttttatgtattatttataagtttgt 15631951  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 149
Target Start/End: Original strand, 35590103 - 35590180
Alignment:
Q  72 attgactaattttttagattatacaaaacattttatgcaaataaataagttttcatgtatgattcataaatttgtcaa 149  Q
    ||||||| ||||||||| ||||  ||||||  ||||||||||||||||| ||| ||||||  |||||||  |||||||    
T  35590103 attgacttattttttagcttatgtaaaacaacttatgcaaataaataagcttttatgtatagttcataagcttgtcaa 35590180  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 152
Target Start/End: Original strand, 39941343 - 39941423
Alignment:
Q  67 tttgaattgactaattttttagattatacaaaacattttatgcaaataaataagttttcatgtatgattcataaatttgtcaaagt 152  Q
    |||||||||||| |||||| || ||| |||||||||     |||||||||| |||||| |||||| ||||||||  ||||||||||    
T  39941343 tttgaattgacttatttttcagcttaaacaaaacat-----gcaaataaatgagtttttatgtattattcataagcttgtcaaagt 39941423  T

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Target: scaffold0100 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 90 - 144
Target Start/End: Complemental strand, 38547 - 38493
Alignment:
Q  90 ttatacaaaacattttatgcaaataaataagttttcatgtatgattcataaattt 144  Q
    ||||| |||| | |||||||||||||||||||||| |||||| ||| ||||||||    
T  38547 ttatataaaatagtttatgcaaataaataagtttttatgtattatttataaattt 38493  T

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Target: scaffold0015 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 63 - 129
Target Start/End: Original strand, 48535 - 48601
Alignment:
Q  63 tccgtttgaattgactaattttttagattatacaaaacattttatgcaaataaataagttttcatgt 129  Q
    |||||||  ||||||| ||||||||| |||||||||| |  ||||||||||||||||| ||| ||||    
T  48535 tccgttttgattgacttattttttagcttatacaaaatagcttatgcaaataaataagcttttatgt 48601  T

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