View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2017_low_3 (Length: 422)
Name: NF2017_low_3
Description: NF2017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2017_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 19 - 343
Target Start/End: Original strand, 51406929 - 51407253
Alignment:
| Q |
19 |
acctatcctactaatgtttaagaacaaacccaattacttaaaaagacgaattcaagcacgtagagattctatcgcaagttgtgaaactagatgcgaaagc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51406929 |
acctatcctactaatgtttaagaacaaacccaatcacttaaaaagacgaattcaagcacgtagagattctatcgcaagttgtgaaactagatgcgaaagt |
51407028 |
T |
|
| Q |
119 |
aatcaatcaatcttacgaaagaattaatgttccagtaaggtaaaactgttctgtaaataagcaataattctaactaacaaataaaatgaaaataacatag |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
51407029 |
aatcaatcaatcttacgaaagaattaatgttccagtaaggtaaaactgttctgtaaataagcaataattctaactaacaaataaaatgaaaataacagag |
51407128 |
T |
|
| Q |
219 |
caattggttaagctgtaaattaacaataatccacaaagacaccaaaaatcaaaagaaccataaaattagcatattgaggttgcagctacaacctaactat |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51407129 |
caattggttaagctgtaaattaacaataatccacaaagacaccaaaaatcaaaagaaccataaaattagcatattgaggttgcagctacaacctaactat |
51407228 |
T |
|
| Q |
319 |
aaagtcactggtcaccaaaacaggg |
343 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
51407229 |
aaagtcactggtcaccaaaacaggg |
51407253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 376 - 417
Target Start/End: Original strand, 51407292 - 51407333
Alignment:
| Q |
376 |
taacatataggttgcagctgatcgtctctagttcatctcact |
417 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
51407292 |
taacatataggttggagctgatcgtctctagttcatgtcact |
51407333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 187 - 223
Target Start/End: Original strand, 51756353 - 51756388
Alignment:
| Q |
187 |
tctaactaacaaataaaatgaaaataacatagcaatt |
223 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
51756353 |
tctaactaacaaataaa-tgaaaataacatagcaatt |
51756388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University