View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2017_low_6 (Length: 292)
Name: NF2017_low_6
Description: NF2017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2017_low_6 |
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| [»] scaffold0425 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 18 - 278
Target Start/End: Original strand, 7982050 - 7982310
Alignment:
| Q |
18 |
atctatgatggaaattcattactttttctcagtttgtgaatatgtttatctattaagaacctggtagtatgaaggcatgtttttctgatgttcacttgtt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7982050 |
atctatgatggaaattcattactttttctcagtttgtgaatatgtttatctattaagaacctggtagtatgaaggcatgtttttctgatgttcacttgtt |
7982149 |
T |
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| Q |
118 |
ctatttaaagttttaacctttggatatttcaatgtgaaagatctttgtgaattatctattaattgaatacatattttatgcattctttgaaagtgatact |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7982150 |
ttatttaaagttttaacctttggatatttcaatgtgaaagatctttgtgaattatctattaattgaatacatattttatgcattctttgaaagtgatact |
7982249 |
T |
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| Q |
218 |
aaatgatgattaaggtttttattannnnnnnnatcacaaaatttgaaaaacaaaatatttt |
278 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
7982250 |
aaatgatgattaaggtttttattattttttttatcacaaaatttgaaaaacaaaatatttt |
7982310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 68
Target Start/End: Original strand, 12073 - 12111
Alignment:
| Q |
30 |
aattcattactttttctcagtttgtgaatatgtttatct |
68 |
Q |
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| T |
12073 |
aattcattactttttctcagtttgtgaataagtttatct |
12111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 68
Target Start/End: Original strand, 6527387 - 6527425
Alignment:
| Q |
30 |
aattcattactttttctcagtttgtgaatatgtttatct |
68 |
Q |
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| T |
6527387 |
aattcattactttttctcagtttgtgaataagtttatct |
6527425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 68
Target Start/End: Original strand, 6848968 - 6849006
Alignment:
| Q |
30 |
aattcattactttttctcagtttgtgaatatgtttatct |
68 |
Q |
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| T |
6848968 |
aattcattactttttctcagtttgtgaataagtttatct |
6849006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 6558653 - 6558693
Alignment:
| Q |
30 |
aattcattactttttctcagtttgtgaatatgtttatctat |
70 |
Q |
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|||||| ||||||||||||||||||||||| |||||||||| |
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| T |
6558653 |
aattcaatactttttctcagtttgtgaataggtttatctat |
6558693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 70
Target Start/End: Complemental strand, 7745508 - 7745466
Alignment:
| Q |
28 |
gaaattcattactttttctcagtttgtgaatatgtttatctat |
70 |
Q |
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|||||||||||||||||| ||||||||||||| ||||| |||| |
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| T |
7745508 |
gaaattcattactttttcacagtttgtgaataggtttaactat |
7745466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 8594039 - 8594081
Alignment:
| Q |
17 |
aatctatgatggaaattcattactttttctcagtttgtgaata |
59 |
Q |
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||||| |||| ||||||||||| |||||||||||||||||||| |
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| T |
8594039 |
aatctttgattgaaattcattattttttctcagtttgtgaata |
8594081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 6789209 - 6789250
Alignment:
| Q |
30 |
aattcattactttttctcagtttgtgaatatgtttatctatt |
71 |
Q |
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||||||||| ||| ||||||||||||||||| |||||||||| |
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| T |
6789209 |
aattcattaatttctctcagtttgtgaatatttttatctatt |
6789250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 8451780 - 8451728
Alignment:
| Q |
17 |
aatctatgatggaaattcattactttttctcagtttgtgaatatgtttatctat |
70 |
Q |
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||||| |||| |||||||||||||||| ||||||||||||||| || ||||||| |
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| T |
8451780 |
aatctttgatcgaaattcattactttt-ctcagtttgtgaataggtctatctat |
8451728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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