View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2017_low_7 (Length: 253)
Name: NF2017_low_7
Description: NF2017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2017_low_7 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 13 - 253
Target Start/End: Complemental strand, 9164962 - 9164719
Alignment:
| Q |
13 |
gatgaagaggatgatgatgatgacgatgtatgggttttattcttcctttcacttttaacttctccctt-cctttccttttacttaatgtcgatttactac |
111 |
Q |
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| T |
9164962 |
gatgaagaggatgctgatgatgacgatgtatgggttttattcttcctttcacttttaacttctccctttcctttccttttacttaatgtcgatttactac |
9164863 |
T |
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| Q |
112 |
aattgtttattgttcttctttccacttataagatgaaagataagcatagcttagtgcaaactacactccctttatgatgtgccacagatagcttttacat |
211 |
Q |
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| T |
9164862 |
aattgtttattgttcttcgttccacttataagatgaaagatgagcatagcttagtgcaaactacactccctttatgatgtgccacagatagcttttacat |
9164763 |
T |
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| Q |
212 |
ttcctgtaact--tctatcgaggaagtggctgattgattagttt |
253 |
Q |
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| T |
9164762 |
ttcctgtaactactctatcgaggaagtggctgattgattagttt |
9164719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 28 - 244
Target Start/End: Complemental strand, 9152118 - 9151909
Alignment:
| Q |
28 |
gatgatgacgatgtatgggttttattcttcctttcacttttaacttctcccttcctttccttttacttaatgtcgatttactacaattgtttattgttct |
127 |
Q |
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| T |
9152118 |
gatgacgacgatgtatgggttttattccttctttctcttttcacttctccctt----tccttttacttactttctatttactataatt-tttgttgttct |
9152024 |
T |
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| Q |
128 |
tctttccacttataagatgaaagataagcatagcttagtgcaaactacactccctttatgatgtgccacagatagcttttacatttcctgtaacttctat |
227 |
Q |
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| T |
9152023 |
ttgttccacttataagatgaaagataagcatagctcagtgcaaattatactccctttatggtgtgctacagatagc-tttacattttctgtaac-tatgt |
9151926 |
T |
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| Q |
228 |
cgaggaagtggctgatt |
244 |
Q |
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| T |
9151925 |
cgaggaagtggctgatt |
9151909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 25 - 178
Target Start/End: Original strand, 9179522 - 9179671
Alignment:
| Q |
25 |
gatgatgatgacgatgtatgggttttattcttcctttcacttttaacttctcccttcctttccttttacttaatgtcgatttactacaattgtttattgt |
124 |
Q |
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| T |
9179522 |
gatgacgatgacgacgtatgagttttattccttctttctcttttcatttctccctttcttt----ttacttactttcgatttactacaatattttgttgt |
9179617 |
T |
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| Q |
125 |
tcttctttccacttataagatgaaagataagcatagcttagtgcaaactacact |
178 |
Q |
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| T |
9179618 |
tctttgttccactaataaaatgaacgataagcatagctcaatgcaaattacact |
9179671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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