View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2017_low_8 (Length: 248)
Name: NF2017_low_8
Description: NF2017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2017_low_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 102; Significance: 9e-51; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 21551783 - 21551916
Alignment:
| Q |
1 |
gggttcgaactctagccaccacaaaaatatatatatttatgtttgattttcaacatattccgtaaatgaggtaatattttaaaggtgtgtctaatatgaa |
100 |
Q |
| |
|
||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||| | |
|
|
| T |
21551783 |
gggttcgaactttaaccaccataaaaatatatatatttatgtttgattttcaacatattccgtaaatgaggtaatattttaagggtatttctaatatgca |
21551882 |
T |
|
| Q |
101 |
cctcttagaaatggtctaaaggtggaccattgtc |
134 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |
|
|
| T |
21551883 |
cctcttagagatggtctaaaggtggaccattgtc |
21551916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 237
Target Start/End: Original strand, 21551979 - 21552009
Alignment:
| Q |
207 |
cttataaggttcacctttggacttagttcat |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
21551979 |
cttataaggttcacctttggacttagttcat |
21552009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 128
Target Start/End: Original strand, 27524982 - 27525026
Alignment:
| Q |
84 |
ggtgtgtctaatatgaacctcttagaaatggtctaaaggtggacc |
128 |
Q |
| |
|
|||||||||||||||||| ||| | ||||||||||||| |||||| |
|
|
| T |
27524982 |
ggtgtgtctaatatgaacatctaaaaaatggtctaaagttggacc |
27525026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University