View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2017_low_9 (Length: 247)

Name: NF2017_low_9
Description: NF2017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2017_low_9
NF2017_low_9
[»] chr5 (47 HSPs)
chr5 (1-247)||(34477413-34477663)
chr5 (1-247)||(31544767-31545018)
chr5 (32-247)||(15354877-15355096)
chr5 (32-247)||(10756929-10757148)
chr5 (32-247)||(23667078-23667297)
chr5 (27-216)||(31542442-31542636)
chr5 (32-217)||(15357153-15357342)
chr5 (32-216)||(10749505-10749693)
chr5 (32-216)||(23664834-23665022)
chr5 (32-216)||(23793565-23793753)
chr5 (22-216)||(38881845-38882044)
chr5 (1-217)||(34479774-34479973)
chr5 (32-159)||(31179766-31179897)
chr5 (103-247)||(659682-659829)
chr5 (73-212)||(4236374-4236517)
chr5 (135-247)||(20504370-20504483)
chr5 (103-216)||(2174680-2174797)
chr5 (103-216)||(25921874-25921992)
chr5 (103-216)||(39797849-39797966)
chr5 (103-247)||(31466379-31466527)
chr5 (103-217)||(38960487-38960605)
chr5 (19-129)||(21684798-21684909)
chr5 (22-216)||(16775897-16776096)
chr5 (170-247)||(6747013-6747090)
chr5 (152-217)||(21684905-21684970)
chr5 (135-222)||(18186505-18186593)
chr5 (170-247)||(40222383-40222460)
chr5 (37-216)||(20507817-20508001)
chr5 (22-218)||(21947768-21947966)
chr5 (32-96)||(38960437-38960501)
chr5 (197-247)||(25452115-25452165)
chr5 (135-218)||(36402763-36402847)
chr5 (170-217)||(31179887-31179934)
chr5 (85-161)||(659850-659929)
chr5 (50-127)||(4409890-4409967)
chr5 (135-217)||(12556359-12556442)
chr5 (103-216)||(2818729-2818847)
chr5 (50-127)||(39854317-39854394)
chr5 (170-216)||(1240078-1240124)
chr5 (170-216)||(10529592-10529638)
chr5 (19-61)||(39797988-39798030)
chr5 (50-127)||(1240171-1240248)
chr5 (50-127)||(6744894-6744971)
chr5 (50-127)||(6747137-6747214)
chr5 (157-216)||(661227-661286)
chr5 (50-125)||(23742180-23742256)
chr5 (51-127)||(42238047-42238123)
[»] chr8 (24 HSPs)
chr8 (1-247)||(18812637-18812887)
chr8 (37-247)||(43081691-43081905)
chr8 (1-216)||(18810483-18810702)
chr8 (37-217)||(43079346-43079530)
chr8 (22-247)||(27829062-27829292)
chr8 (1-219)||(44720614-44720837)
chr8 (22-217)||(27826781-27826981)
chr8 (22-247)||(15072475-15072705)
chr8 (73-212)||(14807552-14807695)
chr8 (22-216)||(12517366-12517565)
chr8 (22-217)||(15067776-15067976)
chr8 (82-212)||(28251988-28252122)
chr8 (103-216)||(4423835-4423952)
chr8 (194-247)||(4812996-4813049)
chr8 (194-247)||(25684265-25684318)
chr8 (169-247)||(590435-590513)
chr8 (194-247)||(3275921-3275974)
chr8 (103-195)||(3886322-3886419)
chr8 (194-247)||(28332253-28332306)
chr8 (168-247)||(16753004-16753083)
chr8 (197-247)||(28895122-28895172)
chr8 (22-96)||(4423938-4424013)
chr8 (170-216)||(9021592-9021638)
chr8 (73-117)||(28251958-28252002)
[»] chr7 (27 HSPs)
chr7 (32-247)||(1047315-1047534)
chr7 (32-247)||(22136847-22137066)
chr7 (32-247)||(40551874-40552093)
chr7 (32-217)||(22107866-22108055)
chr7 (32-217)||(40549626-40549815)
chr7 (32-216)||(9027499-9027687)
chr7 (32-216)||(2935070-2935258)
chr7 (37-247)||(44283-44498)
chr7 (73-216)||(3878322-3878469)
chr7 (22-216)||(27306569-27306767)
chr7 (103-221)||(40837144-40837266)
chr7 (73-216)||(25542281-25542427)
chr7 (103-217)||(26804344-26804462)
chr7 (22-218)||(35377-35578)
chr7 (73-216)||(18567363-18567510)
chr7 (73-216)||(31435439-31435586)
chr7 (170-247)||(30246611-30246688)
chr7 (106-216)||(1049699-1049813)
chr7 (194-247)||(7074409-7074462)
chr7 (194-247)||(25405015-25405068)
chr7 (170-247)||(25409772-25409849)
chr7 (194-247)||(3320557-3320611)
chr7 (50-127)||(40946167-40946244)
chr7 (170-222)||(7464983-7465035)
chr7 (22-96)||(1049635-1049710)
chr7 (170-216)||(48457441-48457487)
chr7 (170-214)||(40946076-40946120)
[»] chr4 (46 HSPs)
chr4 (32-247)||(16932172-16932391)
chr4 (32-247)||(22780764-22780983)
chr4 (20-247)||(11006579-11006812)
chr4 (32-216)||(22783129-22783317)
chr4 (32-247)||(9174496-9174715)
chr4 (1-216)||(9176815-9177035)
chr4 (32-216)||(16934526-16934714)
chr4 (22-247)||(36919927-36920156)
chr4 (20-247)||(3824911-3825143)
chr4 (1-217)||(18846922-18847145)
chr4 (22-247)||(22044730-22044961)
chr4 (22-217)||(38408992-38409192)
chr4 (22-219)||(51015037-51015239)
chr4 (22-216)||(5637809-5638006)
chr4 (19-212)||(37089711-37089910)
chr4 (20-212)||(24888594-24888791)
chr4 (22-216)||(31849939-31850138)
chr4 (103-216)||(7941133-7941251)
chr4 (73-214)||(22803125-22803270)
chr4 (103-216)||(11434769-11434887)
chr4 (22-216)||(36921835-36922033)
chr4 (1-134)||(11008911-11009045)
chr4 (22-217)||(48486112-48486312)
chr4 (22-213)||(5198217-5198413)
chr4 (135-239)||(22048494-22048598)
chr4 (82-216)||(9148054-9148192)
chr4 (170-247)||(4884500-4884577)
chr4 (170-247)||(15316599-15316676)
chr4 (191-247)||(24880227-24880283)
chr4 (193-247)||(4569692-4569746)
chr4 (191-247)||(16638518-16638574)
chr4 (103-193)||(22801262-22801356)
chr4 (82-211)||(52942869-52943002)
chr4 (22-133)||(22047025-22047135)
chr4 (79-214)||(40091813-40091952)
chr4 (27-115)||(52942792-52942881)
chr4 (46-116)||(619811-619882)
chr4 (170-216)||(8528918-8528964)
chr4 (207-244)||(22801354-22801391)
chr4 (50-127)||(47868288-47868365)
chr4 (170-216)||(6764654-6764700)
chr4 (37-127)||(16689290-16689380)
chr4 (170-216)||(47868195-47868241)
chr4 (51-123)||(4556422-4556494)
chr4 (170-218)||(15311992-15312040)
chr4 (217-245)||(47747342-47747370)
[»] chr1 (33 HSPs)
chr1 (1-247)||(47179397-47179647)
chr1 (1-218)||(47177076-47177296)
chr1 (22-247)||(51752073-51752304)
chr1 (1-217)||(16225886-16226105)
chr1 (27-247)||(20302167-20302393)
chr1 (22-218)||(13761575-13761776)
chr1 (22-216)||(51749778-51749978)
chr1 (22-217)||(10400170-10400370)
chr1 (82-216)||(23783238-23783376)
chr1 (22-247)||(28842202-28842432)
chr1 (22-196)||(6823643-6823823)
chr1 (103-217)||(6822774-6822893)
chr1 (22-216)||(15823286-15823485)
chr1 (22-216)||(28840418-28840617)
chr1 (1-96)||(16231444-16231539)
chr1 (147-247)||(14098441-14098541)
chr1 (103-189)||(16231368-16231458)
chr1 (185-247)||(16228205-16228267)
chr1 (115-216)||(20291280-20291386)
chr1 (27-97)||(23783382-23783452)
chr1 (170-247)||(2393766-2393843)
chr1 (194-247)||(9526086-9526139)
chr1 (71-218)||(3580010-3580161)
chr1 (22-217)||(30790736-30790936)
chr1 (135-214)||(38925916-38925996)
chr1 (22-183)||(13214854-13215020)
chr1 (195-247)||(28201926-28201978)
chr1 (22-113)||(28207408-28207500)
chr1 (76-216)||(39462258-39462402)
chr1 (135-216)||(47451405-47451487)
chr1 (50-127)||(13449919-13449996)
chr1 (103-216)||(49687301-49687418)
chr1 (170-218)||(2617278-2617326)
[»] chr6 (30 HSPs)
chr6 (32-247)||(33310923-33311142)
chr6 (32-247)||(26066423-26066642)
chr6 (32-219)||(33308682-33308873)
chr6 (37-216)||(26068699-26068882)
chr6 (32-216)||(29755091-29755279)
chr6 (22-216)||(14507515-14507716)
chr6 (27-217)||(11983374-11983567)
chr6 (75-216)||(8995255-8995400)
chr6 (75-216)||(9019702-9019847)
chr6 (27-217)||(19227753-19227949)
chr6 (22-216)||(15530462-15530661)
chr6 (1-159)||(4816586-4816749)
chr6 (194-247)||(13883097-13883150)
chr6 (194-247)||(31249221-31249274)
chr6 (194-247)||(35201833-35201886)
chr6 (194-247)||(35209068-35209121)
chr6 (193-247)||(30729323-30729377)
chr6 (193-247)||(15533197-15533251)
chr6 (135-216)||(1072313-1072395)
chr6 (22-134)||(30729168-30729281)
chr6 (207-247)||(22344783-22344823)
chr6 (170-216)||(4816739-4816786)
chr6 (50-127)||(26084818-26084895)
chr6 (103-216)||(32279794-32279910)
chr6 (170-218)||(1230721-1230769)
chr6 (170-217)||(17695336-17695383)
chr6 (170-217)||(26064755-26064802)
chr6 (170-217)||(26084724-26084771)
chr6 (170-216)||(28241814-28241860)
chr6 (170-218)||(33215497-33215545)
[»] scaffold0140 (2 HSPs)
scaffold0140 (32-247)||(24159-24378)
scaffold0140 (32-217)||(21914-22103)
[»] chr3 (59 HSPs)
chr3 (1-247)||(6063787-6064037)
chr3 (32-216)||(50493676-50493864)
chr3 (1-216)||(53896535-53896754)
chr3 (1-244)||(5899429-5899678)
chr3 (32-217)||(38210066-38210255)
chr3 (22-218)||(18099508-18099709)
chr3 (1-218)||(5885981-5886203)
chr3 (22-218)||(22114643-22114844)
chr3 (1-159)||(25388654-25388816)
chr3 (27-215)||(5191374-5191567)
chr3 (20-247)||(10956363-10956594)
chr3 (89-247)||(18097291-18097453)
chr3 (135-247)||(7606882-7606994)
chr3 (103-216)||(35777163-35777280)
chr3 (105-247)||(11170114-11170260)
chr3 (22-216)||(1321161-1321360)
chr3 (20-217)||(26720267-26720469)
chr3 (22-218)||(5522953-5523154)
chr3 (91-212)||(10192401-10192525)
chr3 (103-228)||(11162879-11163008)
chr3 (22-216)||(32264381-32264580)
chr3 (91-212)||(10085481-10085605)
chr3 (103-216)||(38889757-38889875)
chr3 (170-247)||(4308772-4308849)
chr3 (171-247)||(43228001-43228077)
chr3 (22-118)||(3859350-3859447)
chr3 (170-247)||(10595495-10595572)
chr3 (170-247)||(35918440-35918517)
chr3 (170-247)||(47878635-47878712)
chr3 (170-247)||(54192866-54192943)
chr3 (20-127)||(10958659-10958767)
chr3 (194-247)||(10094576-10094629)
chr3 (194-247)||(10901367-10901420)
chr3 (194-247)||(16461822-16461875)
chr3 (21-97)||(6066134-6066210)
chr3 (103-216)||(6719532-6719651)
chr3 (194-247)||(10201462-10201515)
chr3 (1-96)||(6719450-6719546)
chr3 (170-217)||(25388617-25388664)
chr3 (27-216)||(24176999-24177193)
chr3 (170-221)||(3859312-3859363)
chr3 (141-218)||(32218834-32218912)
chr3 (170-216)||(6066245-6066291)
chr3 (149-216)||(48362119-48362186)
chr3 (22-100)||(10084731-10084810)
chr3 (103-158)||(6066195-6066254)
chr3 (22-99)||(10191651-10191729)
chr3 (50-127)||(4308648-4308725)
chr3 (75-127)||(45882752-45882804)
chr3 (170-217)||(5858196-5858243)
chr3 (50-97)||(9604979-9605026)
chr3 (170-216)||(27101751-27101797)
chr3 (170-216)||(43225827-43225873)
chr3 (170-216)||(51727497-51727543)
chr3 (50-127)||(27101627-27101704)
chr3 (20-61)||(35777301-35777342)
chr3 (50-127)||(35918316-35918393)
chr3 (50-123)||(43228108-43228181)
chr3 (21-61)||(38889897-38889937)
[»] chr2 (26 HSPs)
chr2 (32-247)||(36559170-36559389)
chr2 (27-245)||(19502356-19502579)
chr2 (32-216)||(45332487-45332675)
chr2 (22-217)||(27104514-27104714)
chr2 (22-217)||(24162552-24162753)
chr2 (27-216)||(19504690-19504884)
chr2 (22-247)||(6259155-6259385)
chr2 (82-216)||(36561539-36561677)
chr2 (37-219)||(21521050-21521237)
chr2 (22-216)||(42064231-42064430)
chr2 (32-117)||(36561447-36561532)
chr2 (103-218)||(43623968-43624087)
chr2 (27-128)||(13910389-13910491)
chr2 (170-247)||(17943179-17943256)
chr2 (170-247)||(20050508-20050585)
chr2 (170-247)||(22712980-22713057)
chr2 (170-247)||(30478635-30478712)
chr2 (194-247)||(2740563-2740616)
chr2 (194-247)||(39686605-39686658)
chr2 (135-217)||(40032504-40032587)
chr2 (20-216)||(22407747-22407948)
chr2 (191-247)||(28462819-28462875)
chr2 (193-247)||(30262268-30262322)
chr2 (103-211)||(6264546-6264658)
chr2 (103-218)||(18800702-18800821)
chr2 (170-216)||(45280457-45280503)
[»] scaffold0472 (1 HSPs)
scaffold0472 (1-216)||(5927-6146)
[»] scaffold0127 (1 HSPs)
scaffold0127 (37-216)||(12871-13054)
[»] scaffold0250 (1 HSPs)
scaffold0250 (22-247)||(2598-2828)
[»] scaffold0025 (2 HSPs)
scaffold0025 (22-247)||(69635-69864)
scaffold0025 (103-218)||(73427-73546)
[»] scaffold0068 (2 HSPs)
scaffold0068 (19-129)||(29001-29112)
scaffold0068 (152-217)||(28940-29005)
[»] scaffold0131 (1 HSPs)
scaffold0131 (22-215)||(14768-14967)
[»] scaffold1764 (1 HSPs)
scaffold1764 (170-247)||(1077-1154)
[»] scaffold0552 (1 HSPs)
scaffold0552 (170-216)||(1303-1349)
[»] scaffold0038 (1 HSPs)
scaffold0038 (170-216)||(41976-42022)


Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 47)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 34477413 - 34477663
Alignment:
Q  1 cttaaaatctttaacatatttgctttaaatttgtaccaaatctgcacccaaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatgaga 100  Q
    |||||||||| ||||| || ||||  |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  34477413 cttaaaatctgtaacaaatctgctcaaaatctgtaacaaatctgcacccaaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatgcga 34477512  T
Q  101 ccccatcgtgccacgatttttccagtgccttgcc----aaactaaaacctccatcgtgccacgttgcccagctatcgtgccacgattctgcagaaacctg 196  Q
    ||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||    
T  34477513 ccccatcgtgccacgatttttccagtgccttgcctaaaaaactaaaacctccatcgtgccacgttgcccagccatcgtgccacgattctgcagaaacttg 34477612  T
Q  197 attttaagttaactctcacaattctccaccttgacttcaaatcagtgatga 247  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34477613 attttaagttaactctcacaattctccaccttgacttcaaatcagtgatga 34477663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 31545018 - 31544767
Alignment:
Q  1 cttaaaatctttaacatatttgctttaaatttgtaccaaatctgcacccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgag 99  Q
    |||||||||| ||||| || ||||| |||| ||||  |||||||||||||||||||||||| | |||||||||||||||||||||||||| | |||||||    
T  31545018 cttaaaatctgtaacaaatctgcttaaaatctgtaataaatctgcacccaaaaatatgtttctgtttttatccgccagcgcaccatcgtgtctcgatgag 31544919  T
Q  100 accccatcgtgccacgatttttccagtgccttgcc----aaactaaaacctccatcgtgccacgttgcccagctatcgtgccacgattctgcagaaacct 195  Q
    |||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  31544918 accccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccacgttgcccagctatcgtgccacgattttgcagaaacct 31544819  T
Q  196 gattttaagttaactctcacaattctccaccttgacttcaaatcagtgatga 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31544818 gattttaagttaactctcacaattctccaccttgacttcaaatcagtgatga 31544767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 32 - 247
Target Start/End: Original strand, 15354877 - 15355096
Alignment:
Q  32 tgtaccaaatctgcacccaaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgcctt 131  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  15354877 tgtaacaaatctgctcccaaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgcctt 15354976  T
Q  132 gcc----aaactaaaacctccatcgtgccacgttgcccagctatcgtgccacgattctgcagaaacctgattttaagttaactctcacaattctccacct 227  Q
    |||    |||||||||||||||||||||| ||  |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  15354977 gcccaaaaaactaaaacctccatcgtgccgcgaagcccagctgtcgtgccacgattgtgcagaaacctgattttaagttaactctcacaattctccacct 15355076  T
Q  228 tgacttcaaatcagtgatga 247  Q
    ||||||||||||||||||||    
T  15355077 tgacttcaaatcagtgatga 15355096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 32 - 247
Target Start/End: Complemental strand, 10757148 - 10756929
Alignment:
Q  32 tgtaccaaatctgcacccaaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgcctt 131  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  10757148 tgtaacaaatctgctcccaaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgcctt 10757049  T
Q  132 gcc----aaactaaaacctccatcgtgccacgttgcccagctatcgtgccacgattctgcagaaacctgattttaagttaactctcacaattctccacct 227  Q
    |||    |||||||||||||||||||||| ||  |||||||  |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  10757048 gcccaaaaaactaaaacctccatcgtgccgcgaagcccagccgtcgtgctacgattgtgcagaaacctgattttaagttaactctcacaattctccacct 10756949  T
Q  228 tgacttcaaatcagtgatga 247  Q
    ||||||||||||||||||||    
T  10756948 tgacttcaaatcagtgatga 10756929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 32 - 247
Target Start/End: Complemental strand, 23667297 - 23667078
Alignment:
Q  32 tgtaccaaatctgcacccaaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgcctt 131  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||    
T  23667297 tgtaacaaatctgctcccaaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatgcgatcccatcgtgccacgatttttccagtgcctt 23667198  T
Q  132 gcc----aaactaaaacctccatcgtgccacgttgcccagctatcgtgccacgattctgcagaaacctgattttaagttaactctcacaattctccacct 227  Q
     ||    ||| ||||| |||||||||||| ||  |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  23667197 tcccaaaaaaataaaaactccatcgtgccgcgaagcccagctgtcgtgccacgattgtgcagaaacctgattttaagttaactctcacaattctccacct 23667098  T
Q  228 tgacttcaaatcagtgatga 247  Q
    ||||||||||||||||||||    
T  23667097 tgacttcaaatcagtgatga 23667078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 27 - 216
Target Start/End: Complemental strand, 31542636 - 31542442
Alignment:
Q  27 aaatttgtaccaaatctgcacccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccag 125  Q
    |||| |||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||    
T  31542636 aaatctgtaacaaatctgcacccaaaaatatgtttctgtttttatccgccagcgcaccatcgtgtctcgatgagaccccatcgtgccacgatttttccag 31542537  T
Q  126 tgccttgcc----aaactaaaacctccatcgtgccacgttgcccagctatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 216  Q
    |||||||||    ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  31542536 tgccttgcccaaaaaactaaaacctccatcgtgccacgttgcccagctatcgtgtcacgattttgcagaaacctgattttaagttaactctcaca 31542442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 32 - 217
Target Start/End: Original strand, 15357153 - 15357342
Alignment:
Q  32 tgtaccaaatctgcacccaaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgcctt 131  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  15357153 tgtaacaaatctgctcccaaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgcctt 15357252  T
Q  132 gcc----aaactaaaacctccatcgtgccacgttgcccagctatcgtgccacgattctgcagaaacctgattttaagttaactctcacaa 217  Q
    |||    |||||||||||||||||||||| ||  |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||    
T  15357253 gcccaaaaaactaaaacctccatcgtgccgcgaagcccagctgtcgtgccacgattgtgcagaaacctgattttaagttaactctcacaa 15357342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 32 - 216
Target Start/End: Complemental strand, 10749693 - 10749505
Alignment:
Q  32 tgtaccaaatctgcacccaaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgcctt 131  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  10749693 tgtaacaaatctgctcccaaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgcctt 10749594  T
Q  132 gcc----aaactaaaacctccatcgtgccacgttgcccagctatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 216  Q
    |||    |||||||||||||||||||||| ||  |||||||  ||||||||||||| ||||||||||||||||||||||||||||||||    
T  10749593 gcccaaaaaactaaaacctccatcgtgccgcgaagcccagccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 10749505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 32 - 216
Target Start/End: Complemental strand, 23665022 - 23664834
Alignment:
Q  32 tgtaccaaatctgcacccaaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgcctt 131  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||    
T  23665022 tgtaacaaatctgctcccaaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatgcgatcccatcgtgccacgatttttccagtgcctt 23664923  T
Q  132 gcc----aaactaaaacctccatcgtgccacgttgcccagctatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 216  Q
     ||    ||| ||||| |||||||||||| ||  |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  23664922 tcccaaaaaaataaaaactccatcgtgccgcgaagcccagctgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 23664834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 32 - 216
Target Start/End: Original strand, 23793565 - 23793753
Alignment:
Q  32 tgtaccaaatctgcacccaaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgcctt 131  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||    
T  23793565 tgtaacaaatctgctcccaaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatgcgatcccatcgtgccacgatttttccagtgcctt 23793664  T
Q  132 gcc----aaactaaaacctccatcgtgccacgttgcccagctatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 216  Q
     ||    ||| ||||| |||||||||||| ||  |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  23793665 tcccaaaaaaataaaaactccatcgtgccgcgaagcccagctgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 23793753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 22 - 216
Target Start/End: Complemental strand, 38882044 - 38881845
Alignment:
Q  22 gctttaaatttgtaccaaatctgcacccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttt 120  Q
    |||| ||||||| | |||||||||||||||||||| |||| | || ||  ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  38882044 gcttaaaatttggaacaaatctgcacccaaaaatacgtttctgttattcgccgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttt 38881945  T
Q  121 tccagtgccttgcc----aaactaaaacctccatcgtgccacgttgcccagctatcgtgccacgatt-ctgcagaaacctgattttaagttaactctcac 215  Q
    ||||||||||||||    |||||||||||||||||||||||||||||||||| |||||||||||||| |||||| | | |||||||||||||||||||||    
T  38881944 tccagtgccttgcctcaaaaactaaaacctccatcgtgccacgttgcccagcaatcgtgccacgattcctgcag-atcttgattttaagttaactctcac 38881846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 34479774 - 34479973
Alignment:
Q  1 cttaaaatctttaacatatttgctttaaatttgtaccaaatctgcacccaaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatgaga 100  Q
    |||||||||| ||||| || ||||  |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||                    
T  34479774 cttaaaatctgtaacaaatctgctcaaaatctgtaacaaatctgcacccaaaaatatgttttatttttatccgccagcgcacca---------------- 34479857  T
Q  101 ccccatcgtgccacgatttttccagtgccttgcc----aaactaaaacctccatcgtgccacgttgcccagctatcgtgccacgattctgcagaaacctg 196  Q
         |||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  34479858 -----tcgtgccacgatttttccagtgccttgcctaaaaaactaaaacctccatcgtgccacgttgcccagccatcgtgccacgattctgcagaaacctg 34479952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 32 - 159
Target Start/End: Original strand, 31179766 - 31179897
Alignment:
Q  32 tgtaccaaatctgcacccaaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgcctt 131  Q
    |||| ||||||||| |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  31179766 tgtaacaaatctgctcccaaaaatacgttttatttttacccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgtctt 31179865  T
Q  132 gcc----aaactaaaacctccatcgtgccacg 159  Q
    |||    |||||||||||||||||||||||||    
T  31179866 gcccaaaaaactaaaacctccatcgtgccacg 31179897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 103 - 247
Target Start/End: Complemental strand, 659829 - 659682
Alignment:
Q  103 ccatcgtgccacgatttttccagtgccttgcc--aaactaaaacctcca-tcgtgccacgttgcccagctatcgtgccacgatt-ctgcagaaacctgat 198  Q
    ||||||||||||||||||||||||| ||||||  ||||| ||||||||| ||||||||||||||| ||| |||||||||||||| |||||||| ||||||    
T  659829 ccatcgtgccacgatttttccagtgacttgcctcaaactgaaacctccaatcgtgccacgttgcctagccatcgtgccacgatttctgcagaa-cctgat 659731  T
Q  199 tttaagttaactctcacaattctccaccttgacttcaaatcagtgatga 247  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  659730 tttaagttaactctcacaattctccaccttgacttcaaatcagggatga 659682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 73 - 212
Target Start/End: Complemental strand, 4236517 - 4236374
Alignment:
Q  73 gccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgccttgcc---aaactaaaacctcca-tcgtgccacgttgcccagc 168  Q
    ||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||   ||||| ||||||||| |||||||||||||||||||    
T  4236517 gccagcgcaccatcgtgccacgatgcgatcccattgtgccacgatttttccagtgccttgccttaaaactgaaacctccaatcgtgccacgttgcccagc 4236418  T
Q  169 tatcgtgccacgattctgcagaaacctgattttaagttaactct 212  Q
     |||||||||| |||||||||||| |||||||||||||||||||    
T  4236417 catcgtgccacaattctgcagaaatctgattttaagttaactct 4236374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 135 - 247
Target Start/End: Original strand, 20504370 - 20504483
Alignment:
Q  135 aaactaaaacctcca-tcgtgccacgttgcccagctatcgtgccacgatt-ctgcagaaacctgattttaagttaactctcacaattctccaccttgact 232  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  20504370 aaactaaaacctccaatcgtgccacgttgcccagctatcgtgccacgatttctgcagaa-cctgattttaagttaactctcacaattctccacattgact 20504468  T
Q  233 tcaaatcagtgatga 247  Q
    |||||||||||||||    
T  20504469 tcaaatcagtgatga 20504483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 103 - 216
Target Start/End: Complemental strand, 2174797 - 2174680
Alignment:
Q  103 ccatcgtgccacgatttttccagtgccttgcc----aaactaaaacctccatcgtgccacgttgcccagctatcgtgccacgattctgcagaaacctgat 198  Q
    ||||||||||||||||||||||||||||||||    ||||| ||||||||||||||||||||||||  || |||||||||||||||||||||||||||||    
T  2174797 ccatcgtgccacgatttttccagtgccttgcctaaaaaactgaaacctccatcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgat 2174698  T
Q  199 tttaagttaactctcaca 216  Q
    ||||||||||||||||||    
T  2174697 tttaagttaactctcaca 2174680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 103 - 216
Target Start/End: Original strand, 25921874 - 25921992
Alignment:
Q  103 ccatcgtgccacgatttttccagtgccttgcc-----aaactaaaacctccatcgtgccacgttgcccagctatcgtgccacgattctgcagaaacctga 197  Q
    ||||||||||||||||||||||||||||||||     ||||| |||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||    
T  25921874 ccatcgtgccacgatttttccagtgccttgcctcaaaaaactgaaacctccatcgtgccacgttgtccaaccatcgtgccacgattctgcagaaacctga 25921973  T
Q  198 ttttaagttaactctcaca 216  Q
    |||||||||||||||||||    
T  25921974 ttttaagttaactctcaca 25921992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 103 - 216
Target Start/End: Complemental strand, 39797966 - 39797849
Alignment:
Q  103 ccatcgtgccacgatttttccagtgccttgcc----aaactaaaacctccatcgtgccacgttgcccagctatcgtgccacgattctgcagaaacctgat 198  Q
    ||||||||||| ||||||||| ||||||||||    ||||| ||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||    
T  39797966 ccatcgtgccatgatttttccggtgccttgcctcaaaaactgaaacctccatcatgccacgttgcccagccatcgtgccacgattatgcagaaacctgat 39797867  T
Q  199 tttaagttaactctcaca 216  Q
    ||||||||||||||||||    
T  39797866 tttaagttaactctcaca 39797849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 103 - 247
Target Start/End: Original strand, 31466379 - 31466527
Alignment:
Q  103 ccatcgtgccacgatttttccagtgccttgcca---aactaaaacctc-catcgtgccacgttgcccagctatcgtgccacgattc-tgcagaaacctga 197  Q
    ||||||||||| ||||||||||||| ||||||    |||| |||| || ||||||||||||||||||  | ||||||||||||||| |||| ||||||||    
T  31466379 ccatcgtgccaagatttttccagtgacttgcctcataactgaaacatctcatcgtgccacgttgcccttcaatcgtgccacgattcctgca-aaacctga 31466477  T
Q  198 ttttaagttaactctcacaattctccaccttgacttcaaatcagtgatga 247  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  31466478 ttttaagttaactctcacaattctccacattgacttcaaatcagtgatga 31466527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 103 - 217
Target Start/End: Original strand, 38960487 - 38960605
Alignment:
Q  103 ccatcgtgccacgatttttccagtgccttgcc----aaactaaaacctccatcgtgccacgttgcccagctatcgtgccacgattctgcagaaacctgat 198  Q
    ||||||||||||||||||||||||||||||||    |||||||||||||||||||||| |   |||||||  ||||||||||||| ||||||||||||||    
T  38960487 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccgcaaagcccagccgtcgtgccacgattgtgcagaaacctgat 38960586  T
Q  199 tttaagttaactctcacaa 217  Q
    |||||||||||||||||||    
T  38960587 tttaagttaactctcacaa 38960605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 19 - 129
Target Start/End: Original strand, 21684798 - 21684909
Alignment:
Q  19 tttgctttaaatttgtaccaaatctgcacccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgat 117  Q
    ||||||| ||||||||| ||||||||||| ||||||||||||| | |||||  | ||||||||||||||||||||||||| |||||||||||||||||||    
T  21684798 tttgcttaaaatttgtaacaaatctgcactcaaaaatatgtttctgtttttcgctgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgat 21684897  T
Q  118 ttttccagtgcc 129  Q
    ||||||||||||    
T  21684898 ttttccagtgcc 21684909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 22 - 216
Target Start/End: Complemental strand, 16776096 - 16775897
Alignment:
Q  22 gctttaaatttgtaccaaatctgcacccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttt 120  Q
    |||| ||||||| | ||||||| ||| ||||||||||||| | |||||    ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  16776096 gcttaaaatttggaacaaatcttcactcaaaaatatgtttctgtttttcgatgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttt 16775997  T
Q  121 tccagtgccttgc--caaac-taaaacctcc-atcgtgccacgttgcccagctatcgtgccacgatt-ctgcagaaacctgattttaagttaactctcac 215  Q
    | |||||| ||||  ||||| | |||||||| |||||| |||||||||  || |||||||||||||| |||||| | |||||||||||||||| ||||||    
T  16775996 ttcagtgctttgcctcaaacttgaaacctccaatcgtgtcacgttgccttgccatcgtgccacgattcctgcag-atcctgattttaagttaattctcac 16775898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 170 - 247
Target Start/End: Complemental strand, 6747090 - 6747013
Alignment:
Q  170 atcgtgccacgattctgcagaaacctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatga 247  Q
    |||||| ||||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6747090 atcgtggcacgattctccagaattctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatga 6747013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 152 - 217
Target Start/End: Original strand, 21684905 - 21684970
Alignment:
Q  152 gtgccacgttgcccagctatcgtgccacgattctgcagaaacctgattttaagttaactctcacaa 217  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  21684905 gtgccacgttgcccagccatcgtgccacgattctgcagaaacctgattttaagttaactctcacaa 21684970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 135 - 222
Target Start/End: Original strand, 18186505 - 18186593
Alignment:
Q  135 aaactaaaacctcca-tcgtgccacgttgcccagctatcgtgccacgattctgcagaaacctgattttaagttaactctcacaattctc 222  Q
    ||||| ||||||||| ||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||| |||||    
T  18186505 aaactgaaacctccaatcgtgccacgttgcccagccatcgtaccacgattctgcagaaacttgattttaagttaactctcacatttctc 18186593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 170 - 247
Target Start/End: Complemental strand, 40222460 - 40222383
Alignment:
Q  170 atcgtgccacgattctgcagaaacctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatga 247  Q
    |||||| ||||||||| ||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40222460 atcgtggcacgattctccagatttctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatga 40222383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 37 - 216
Target Start/End: Original strand, 20507817 - 20508001
Alignment:
Q  37 caaatctgcacccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgccttgcc- 134  Q
    ||||||||| ||||||||||||||| | || ||  | || |||||||| |||||||| | ||  | |||||||||||||||    |||| || ||||||     
T  20507817 caaatctgctcccaaaaatatgtttctgttattcgctgctagcgcaccttcgtgccatgttgcaatcccatcgtgccacgaaaaatccaatgacttgcct 20507916  T
Q  135 --aaactaaaacctcca-tcgtgccacgttgcccagctatcgtgccacga-ttctgcagaaacctgattttaagttaactctcaca 216  Q
      ||||||||||||||| |||||| |||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  20507917 caaaactaaaacctccaatcgtgctacgttgcccaactatcgtgccacgatttctgcag-aacctgattttaagttaactctcaca 20508001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 22 - 218
Target Start/End: Complemental strand, 21947966 - 21947768
Alignment:
Q  22 gctttaaatttgtaccaaatctgcacccaaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgattttt 121  Q
    |||| ||||||| | |||||||||||||||||||||||||   | |||| |||   | ||||||||||||||| ||  | ||||||||||||||     |    
T  21947966 gcttaaaatttggaacaaatctgcacccaaaaatatgtttc--tgttattcgctgccacaccatcgtgccacgttgcaatcccatcgtgccacgtaaagt 21947869  T
Q  122 ccagtgccttgcc---aaactaaaacctcca-tcgtgccacgttgcccagctatcgtgccacgatt-ctgcagaaacctgattttaagttaactctcaca 216  Q
    |||||| ||| ||   ||||| ||||||||| ||||| ||||||||| ||| |||||||||||||| |||||||| ||||||||||||||||||||||||    
T  21947868 ccagtgacttacctcaaaactgaaacctccaatcgtgtcacgttgcctagccatcgtgccacgatttctgcagaa-cctgattttaagttaactctcaca 21947770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 32 - 96
Target Start/End: Original strand, 38960437 - 38960501
Alignment:
Q  32 tgtaccaaatctgcacccaaaaatatgttttatttttatccgccagcgcaccatcgtgccacgat 96  Q
    |||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  38960437 tgtaacaaatctgctcccaaaaatatgttttatttttatccgccaacgcaccatcgtgccacgat 38960501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 197 - 247
Target Start/End: Complemental strand, 25452165 - 25452115
Alignment:
Q  197 attttaagttaactctcacaattctccaccttgacttcaaatcagtgatga 247  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25452165 attttaagttaactctcacaattctccaccttgacttcaaatcagtgatga 25452115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 135 - 218
Target Start/End: Original strand, 36402763 - 36402847
Alignment:
Q  135 aaactaaaacctcca-tcgtgccacgttgcccagctatcgtgccacgattctgcagaaacctgattttaagttaactctcacaat 218  Q
    ||||| ||||||||| |||||| | |||||||||| ||||||||  |||||||||||||||| ||||||||||||||||||||||    
T  36402763 aaactgaaacctccaatcgtgctatgttgcccagccatcgtgcctagattctgcagaaacctaattttaagttaactctcacaat 36402847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 170 - 217
Target Start/End: Original strand, 31179887 - 31179934
Alignment:
Q  170 atcgtgccacgattctgcagaaacctgattttaagttaactctcacaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  31179887 atcgtgccacgattctgcagaaacctgattttaagttaactctcacaa 31179934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 85 - 161
Target Start/End: Original strand, 659850 - 659929
Alignment:
Q  85 tcgtgccacgatgagaccccatcgtgccacgatttttccagtgccttgc--caaactaaaacctcc-atcgtgccacgtt 161  Q
    ||||||||| ||| |||| |||||||||||||||||||||||| |||||  |||||| |||||||| |||||||||||||    
T  659850 tcgtgccacaatgcgacctcatcgtgccacgatttttccagtgacttgcctcaaactgaaacctccaatcgtgccacgtt 659929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 127
Target Start/End: Complemental strand, 4409967 - 4409890
Alignment:
Q  50 aaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtg 127  Q
    ||||||| |||||||||||||| |||| |||||||||||| ||||||  || || || ||| ||||||||||||||||    
T  4409967 aaaaatacgttttatttttatctgccatcgcaccatcgtggcacgattcgatccaattgtggcacgatttttccagtg 4409890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 135 - 217
Target Start/End: Original strand, 12556359 - 12556442
Alignment:
Q  135 aaactaaaacctcca-tcgtgccacgttgcccagctatcgtgccacgatt-ctgcagaaacctgattttaagttaactctcacaa 217  Q
    ||||| ||||||||| | ||||||||||||||||| ||  |||||||||| |||||||| ||||||||||| |||||||||||||    
T  12556359 aaactgaaacctccaattgtgccacgttgcccagccattatgccacgatttctgcagaa-cctgattttaaattaactctcacaa 12556442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 216
Target Start/End: Original strand, 2818729 - 2818847
Alignment:
Q  103 ccatcgtgccacgatttttccagtgccttgcc---aaactaaaacctcca-tcgtgccacgttgcccagctatcgtgccacga-ttctgcagaaacctga 197  Q
    ||||||||||||||    ||||||| ||||||   ||||| ||||||||| |||||||| |||||| ||| |||||||||||| |||||||| ||||| |    
T  2818729 ccatcgtgccacgaaaaatccagtgacttgcctcaaaactgaaacctccaatcgtgccatgttgcctagccatcgtgccacgatttctgcag-aacctaa 2818827  T
Q  198 ttttaag-ttaactctcaca 216  Q
    ||||||| ||||||||||||    
T  2818828 ttttaagtttaactctcaca 2818847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 127
Target Start/End: Complemental strand, 39854394 - 39854317
Alignment:
Q  50 aaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtg 127  Q
    ||||||| ||||||||||||||  | | |||||||||||||||||||| ||  | | |||| ||||||||||||||||    
T  39854394 aaaaatacgttttatttttatcttcaatcgcaccatcgtgccacgatgcgattcaaccgtgacacgatttttccagtg 39854317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 216
Target Start/End: Complemental strand, 1240124 - 1240078
Alignment:
Q  170 atcgtgccacgattctgcagaaacctgattttaagttaactctcaca 216  Q
    |||||| ||||||||| |||||  |||||||||||||||||||||||    
T  1240124 atcgtggcacgattctccagaattctgattttaagttaactctcaca 1240078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 216
Target Start/End: Original strand, 10529592 - 10529638
Alignment:
Q  170 atcgtgccacgattctgcagaaacctgattttaagttaactctcaca 216  Q
    |||||| ||||||||| |||||  |||||||||||||||||||||||    
T  10529592 atcgtggcacgattctccagaattctgattttaagttaactctcaca 10529638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 39798030 - 39797988
Alignment:
Q  19 tttgctttaaatttgtaccaaatctgcacccaaaaatatgttt 61  Q
    ||||||| ||||||| | |||||||||||||||||||||||||    
T  39798030 tttgcttaaaatttggaacaaatctgcacccaaaaatatgttt 39797988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #42
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 127
Target Start/End: Complemental strand, 1240248 - 1240171
Alignment:
Q  50 aaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtg 127  Q
    ||||||| ||||||||||||||  | |  ||||||||||| ||||||  || || |||||| ||||||||||||||||    
T  1240248 aaaaatacgttttatttttatcttcaattgcaccatcgtggcacgattcgatccaatcgtggcacgatttttccagtg 1240171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #43
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 127
Target Start/End: Complemental strand, 6744971 - 6744894
Alignment:
Q  50 aaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtg 127  Q
    ||||||| ||||||||||||||  | | |||||||||||  ||||||  || || |||||| ||||||||||||||||    
T  6744971 aaaaatacgttttatttttatcttcaatcgcaccatcgtagcacgattcgatccaatcgtggcacgatttttccagtg 6744894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #44
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 127
Target Start/End: Complemental strand, 6747214 - 6747137
Alignment:
Q  50 aaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtg 127  Q
    ||||||| ||||||||||||||  | | |||||||||||| ||||||  || || |||||| ||||| ||||||||||    
T  6747214 aaaaatacgttttatttttatcttcaatcgcaccatcgtggcacgattcgatccaatcgtggcacgacttttccagtg 6747137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #45
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 216
Target Start/End: Original strand, 661227 - 661286
Alignment:
Q  157 acgttgcccagctatcgtgccacgatt-ctgcagaaacctgattttaagttaactctcaca 216  Q
    |||||||| ||| ||| | |||||||| |||||||| ||||||||||||||||||||||||    
T  661227 acgttgcctagccatcataccacgatttctgcagaa-cctgattttaagttaactctcaca 661286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #46
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 125
Target Start/End: Original strand, 23742180 - 23742256
Alignment:
Q  50 aaaaatatgttttatttttatcc-gccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccag 125  Q
    |||||| |||||||||||||||| ||||    ||||| ||||||||||| || || |||||||||||| ||||||||    
T  23742180 aaaaatttgttttatttttatcccgccaagataccattgtgccacgatgtgatcctatcgtgccacgaattttccag 23742256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #47
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 127
Target Start/End: Complemental strand, 42238123 - 42238047
Alignment:
Q  51 aaaatatgttttatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtg 127  Q
    |||||| |||||  |||||||| | | ||||||||||||||||| || ||   ||||||| ||||||||||||||||    
T  42238123 aaaatacgtttttgttttatcctcaatcgcaccatcgtgccacgttgcgatttcatcgtggcacgatttttccagtg 42238047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 18812887 - 18812637
Alignment:
Q  1 cttaaaatctttaacatatttgctttaaatttgtaccaaatctgcacccaaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatgaga 100  Q
    |||||||| | ||||| || ||||  |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  18812887 cttaaaatttgtaacaaatctgctcaaaatctgtaacaaatctgcacccaaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatgcga 18812788  T
Q  101 ccccatcgtgccacgatttttccagtgccttgcc----aaactaaaacctccatcgtgccacgttgcccagctatcgtgccacgattctgcagaaacctg 196  Q
    ||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||  ||||||||||||||| ||||||||||    
T  18812787 ccccatcgtgccacgatttttccagtgccttgcctaaaaaactaaaacctccatcgtgccacgttgcccagccgtcgtgccacgattcttcagaaacctg 18812688  T
Q  197 attttaagttaactctcacaattctccaccttgacttcaaatcagtgatga 247  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18812687 attttaagttaactctcacaattctccaccttgacttcaaatcagtgatga 18812637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 37 - 247
Target Start/End: Complemental strand, 43081905 - 43081691
Alignment:
Q  37 caaatctgcacccaaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgccttgcc-- 134  Q
    ||||||||| |||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  43081905 caaatctgctcccaaagatacgttttatttttatccgccagcgtaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgccttgccca 43081806  T
Q  135 --aaactaaaacctccatcgtgccacgttgcccagctatcgtgccacgattctgcagaaacctgattttaagttaactctcacaattctccaccttgact 232  Q
      |||||||||||||||||||||||| |||||  ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43081805 aaaaactaaaacctccatcgtgccactttgccttgccgtcgtgccacgattctgcagaaacctgattttaagttaactctcacaattctccaccttgact 43081706  T
Q  233 tcaaatcagtgatga 247  Q
    |||||||| ||||||    
T  43081705 tcaaatcaatgatga 43081691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 18810702 - 18810483
Alignment:
Q  1 cttaaaatctttaacatatttgctttaaatttgtaccaaatctgcacccaaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatgaga 100  Q
    |||||||| | ||||| || ||||  |||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||    
T  18810702 cttaaaatttgtaacaaatctgctcaaaatctgtaacaaatctgcacccaaaaatgtgttttatttttatccgccagcgcaccatcgtgccacgatgtga 18810603  T
Q  101 ccccatcgtgccacgatttttccagtgccttgcc----aaactaaaacctccatcgtgccacgttgcccagctatcgtgccacgattctgcagaaacctg 196  Q
    |||||||||||| | |||||||||||||||||||    ||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  18810602 ccccatcgtgccgcaatttttccagtgccttgcctaaaaaaataaaacctccatcgtgccacgttgcccagccgtcgtgccacgattctgcagaaacctg 18810503  T
Q  197 attttaagttaactctcaca 216  Q
    ||||||||||||||||||||    
T  18810502 attttaagttaactctcaca 18810483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 37 - 217
Target Start/End: Complemental strand, 43079530 - 43079346
Alignment:
Q  37 caaatctgcacccaaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgccttgcc-- 134  Q
    ||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||      
T  43079530 caaatctgctcccaaagatacgttttatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtaccacgatttttccagtgccttgccca 43079431  T
Q  135 --aaactaaaacctccatcgtgccacgttgcccagctatcgtgccacgattctgcagaaacctgattttaagttaactctcacaa 217  Q
      ||||||||||||||||||||||||||||||  ||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  43079430 aaaaactaaaacctccatcgtgccacgttgccttgccgtcgtgccacgattctgcagaaacctgattttaagttaactctcacaa 43079346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 22 - 247
Target Start/End: Complemental strand, 27829292 - 27829062
Alignment:
Q  22 gctttaaatttgtaccaaatctgcacccaaaaatatgtttta-tttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttt 120  Q
    |||| ||||||| | ||||||||||| ||||||||||||||  |||||  | ||||||||||||||||||||||||| || |||||||||||||||||||    
T  27829292 gcttaaaatttggaacaaatctgcactcaaaaatatgtttttgtttttcgctgccagcgcaccatcgtgccacgatgcgatcccatcgtgccacgatttt 27829193  T
Q  121 tccagtgccttgcc----aaactaaaacctccatcgtgccacgttgcccagctatcgtgccacgattc-tgcagaaacctgattttaagttaactctcac 215  Q
    |||||||  |||||    ||| | |||||||||||||||||||||||||||| ||||||||||||||| ||||||  |||||||||||||||||||||||    
T  27829192 tccagtgttttgcctcaaaaaatgaaacctccatcgtgccacgttgcccagcaatcgtgccacgattcctgcagat-cctgattttaagttaactctcac 27829094  T
Q  216 aattctccaccttgacttcaaatcagtgatga 247  Q
    ||||||||||||||||||||||||||||||||    
T  27829093 aattctccaccttgacttcaaatcagtgatga 27829062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 44720837 - 44720614
Alignment:
Q  1 cttaaaatctttaacatatttgctttaaatttgtaccaaatctgcacccaaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatgaga 100  Q
    |||||||||| ||||| || ||||| |||| |||| |||||||||||||||||||||||||   ||||  | ||||||||||||||||||||||||| ||    
T  44720837 cttaaaatctgtaacaaatctgcttaaaatctgtaacaaatctgcacccaaaaatatgtttctgtttttgctgccagcgcaccatcgtgccacgatgcga 44720738  T
Q  101 ccccatcgtgccacgatttttccagtgccttgcc---aaactaaaacctcc-atcgtgccacgttgcccagctatcgtgccacgattctgcag-aaacct 195  Q
    |||||||||||||||||||||||||| |||||||   ||||| |||||||| | ||||||||  |||||||| ||| |||||||||||||||| ||||||    
T  44720737 ccccatcgtgccacgatttttccagtaccttgcctcaaaactgaaacctccaaacgtgccacaatgcccagcaatcatgccacgattctgcagaaaacct 44720638  T
Q  196 gattttaagttaactctcacaatt 219  Q
    ||||||||||||||||||||||||    
T  44720637 gattttaagttaactctcacaatt 44720614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 22 - 217
Target Start/End: Complemental strand, 27826981 - 27826781
Alignment:
Q  22 gctttaaatttgtaccaaatctgcacccaaaaatatgtttta-tttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttt 120  Q
    |||| ||||||| | ||||||||||| ||||||||||||||  |||||  | ||||||||||||||||||||||||| || |||||||||||||||||||    
T  27826981 gcttaaaatttggaacaaatctgcactcaaaaatatgtttttgtttttcgctgccagcgcaccatcgtgccacgatgcgatcccatcgtgccacgatttt 27826882  T
Q  121 tccagtgccttgc----caaactaaaacctccatcgtgccacgttgcccagctatcgtgccacgatt-ctgcagaaacctgattttaagttaactctcac 215  Q
    |||||||| ||||     ||| | |||||||||||||||||||||||||||| |||||||||||||| |||||| | |||||||||||||||||||||||    
T  27826881 tccagtgctttgcttcaaaaaatgaaacctccatcgtgccacgttgcccagcaatcgtgccacgattcctgcag-atcctgattttaagttaactctcac 27826783  T
Q  216 aa 217  Q
    ||    
T  27826782 aa 27826781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 22 - 247
Target Start/End: Complemental strand, 15072705 - 15072475
Alignment:
Q  22 gctttaaatttgtaccaaatctgcacccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttt 120  Q
    |||| ||||||| | ||||| |||||||||||||| |||| | || ||  | |||||||||||||| ||||||| || || ||||||||| |||||||||    
T  15072705 gcttaaaatttggaacaaatttgcacccaaaaatacgtttctgttattcgctgccagcgcaccatcatgccacgttgcgatcccatcgtgacacgatttt 15072606  T
Q  121 tccagtgccttgcc---aaactaaaacctcca-tcgtgccacgttgcccagctatcgtgccacgattc-tgcagaaacctgattttaagttaactctcac 215  Q
    || |||| |||||    ||||| ||||||||| ||||| ||||||||||||| |||||| |||||||| ||||||| | |||||||||||||||||||||    
T  15072605 tctagtggcttgcttcaaaactgaaacctccaatcgtgtcacgttgcccagccatcgtgtcacgattcctgcagaatc-tgattttaagttaactctcac 15072507  T
Q  216 aattctccaccttgacttcaaatcagtgatga 247  Q
    ||||||||||||||||||||||||||||||||    
T  15072506 aattctccaccttgacttcaaatcagtgatga 15072475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 73 - 212
Target Start/End: Complemental strand, 14807695 - 14807552
Alignment:
Q  73 gccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgccttgc--caaac-taaaacctcc-atcgtgccacgttgcccagc 168  Q
    |||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||  ||||| | |||||||| |||||| ||||||||||| |    
T  14807695 gccagcgcaccaccgtgccacgatgcgaccccatcgtgccacgatttttccagtgctttgcctcaaacttgaaacctccaatcgtgtcacgttgcccaac 14807596  T
Q  169 tatcgtgccacgattctgcagaaacctgattttaagttaactct 212  Q
     ||| |||||||||||||||||||||||||||||||||||||||    
T  14807595 catcatgccacgattctgcagaaacctgattttaagttaactct 14807552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 22 - 216
Target Start/End: Original strand, 12517366 - 12517565
Alignment:
Q  22 gctttaaatttgtaccaaatctgcacccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttt 120  Q
    |||| ||||||| | ||||| ||||| ||||||||||||| | |||||  | |||||| |||||||||||||||||| || |||||||||||||||||||    
T  12517366 gcttaaaatttggaacaaatttgcactcaaaaatatgtttctgtttttcgctgccagcacaccatcgtgccacgatgcgatcccatcgtgccacgatttt 12517465  T
Q  121 tccagtgccttgcc---aaactaaaacctcc-atcgtgccacgttgcccagctatcgtgccacgatt-ctgcagaaacctgattttaagttaactctcac 215  Q
    |||||| | |||||   ||||| |||||||| ||||||||||||||||  || |||||||||||||| |||||| | |||||||||||||||||||||||    
T  12517466 tccagtacattgcctcaaaactgaaacctccaatcgtgccacgttgccttgccatcgtgccacgattcctgcag-atcctgattttaagttaactctcac 12517564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 22 - 217
Target Start/End: Complemental strand, 15067976 - 15067776
Alignment:
Q  22 gctttaaatttgtaccaaatctgcacccaaaaatatgttttattt-ttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttt 120  Q
    |||| ||||||| | |||||||||||||||||||| |||||  || ||  | |||||||||||||||||||||| || || ||||||||| || ||||||    
T  15067976 gcttaaaatttggaacaaatctgcacccaaaaatacgtttttgttattcgctgccagcgcaccatcgtgccacgttgcgatcccatcgtggcatgatttt 15067877  T
Q  121 tccagtgccttg---ccaaactaaaacctcc-atcgtgccacgttgcccagctatcgtgccacgatt-ctgcagaaacctgattttaagttaactctcac 215  Q
    ||||||| ||||   | ||||| |||||||| ||||||||| |||||||||| ||| |||||||||| ||||| ||| |||||||||||||||| |||||    
T  15067876 tccagtggcttgcttcaaaactgaaacctccaatcgtgccatgttgcccagccatcttgccacgattcctgca-aaatctgattttaagttaacactcac 15067778  T
Q  216 aa 217  Q
    ||    
T  15067777 aa 15067776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 82 - 212
Target Start/End: Original strand, 28251988 - 28252122
Alignment:
Q  82 ccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgccttgc--caaac-taaaacctcc-atcgtgccacgttgcccagctatcgtgcc 177  Q
    |||||||||||||||| || ||||||||||||||||||||||||||| ||||  ||||| | |||||||| ||||| |||||||||| ||| ||||||||    
T  28251988 ccatcgtgccacgatgcgatcccatcgtgccacgatttttccagtgctttgcctcaaacttgaaacctccaatcgtaccacgttgcctagccatcgtgcc 28252087  T
Q  178 acgatt-ctgcagaaacctgattttaagttaactct 212  Q
    |||||| |||||| | ||||||||||||||||||||    
T  28252088 acgattcctgcag-atcctgattttaagttaactct 28252122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 103 - 216
Target Start/End: Complemental strand, 4423952 - 4423835
Alignment:
Q  103 ccatcgtgccacgatttttccagtgccttgcc---aaactaaaacctcc-atcgtgccacgttgcccagctatcgtgccacgatt-ctgcagaaacctga 197  Q
    ||||||||||||||||||||||||||||||||   ||||| |||||||| || ||||||||||||||||| || ||||||||||| |||||| | | |||    
T  4423952 ccatcgtgccacgatttttccagtgccttgccttaaaactgaaacctccaattgtgccacgttgcccagcaattgtgccacgattcctgcag-atcttga 4423854  T
Q  198 ttttaagttaactctcaca 216  Q
    |||||||||||||||||||    
T  4423853 ttttaagttaactctcaca 4423835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 194 - 247
Target Start/End: Original strand, 4812996 - 4813049
Alignment:
Q  194 ctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatga 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4812996 ctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatga 4813049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 194 - 247
Target Start/End: Complemental strand, 25684318 - 25684265
Alignment:
Q  194 ctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatga 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25684318 ctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatga 25684265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 169 - 247
Target Start/End: Complemental strand, 590513 - 590435
Alignment:
Q  169 tatcgtgccacgattctgcagaaacctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatga 247  Q
    ||||||| |||||| || ||||   |||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  590513 tatcgtggcacgatactccagatttctgattttaagttaactctcacaattcttcaccttgacttcaaatcagtgatga 590435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 194 - 247
Target Start/End: Complemental strand, 3275974 - 3275921
Alignment:
Q  194 ctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatga 247  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  3275974 ctgattttaagttaactctcgcaattctccaccttgacttcaaatcagtgatga 3275921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 103 - 195
Target Start/End: Original strand, 3886322 - 3886419
Alignment:
Q  103 ccatcgtgccacgatttttccagtgccttgcc-----aaactaaaacctccatcgtgccacgttgcccagctatcgtgccacgattctgcagaaacct 195  Q
    ||||||| ||||||||||||||||| ||||||     ||||| |||||||||||||||||||||| ||||| ||| || |||||||||||||||||||    
T  3886322 ccatcgtaccacgatttttccagtgtcttgcctcaaaaaactgaaacctccatcgtgccacgttgtccagccatcatgtcacgattctgcagaaacct 3886419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 194 - 247
Target Start/End: Complemental strand, 28332306 - 28332253
Alignment:
Q  194 ctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatga 247  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  28332306 ctgattttaagttaactctcacaattctccaccttgacttcaaatcagcgatga 28332253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 168 - 247
Target Start/End: Original strand, 16753004 - 16753083
Alignment:
Q  168 ctatcgtgccacgattctgcagaaacctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatga 247  Q
    |||||||| |||||| || ||||   ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  16753004 ctatcgtggcacgatgctccagatttctgattttaagttaagtctcacaattctccaccttgacttcaaattagtgatga 16753083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 197 - 247
Target Start/End: Complemental strand, 28895172 - 28895122
Alignment:
Q  197 attttaagttaactctcacaattctccaccttgacttcaaatcagtgatga 247  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  28895172 attttaagttaagtctcacaattctccaccttgacttcaaatcagtgatga 28895122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 22 - 96
Target Start/End: Complemental strand, 4424013 - 4423938
Alignment:
Q  22 gctttaaatttgtaccaaatctgcacccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgat 96  Q
    |||| ||||||| | ||||||||||| ||||||||||||| |||||||  | ||||||||||||||||||||||||    
T  4424013 gcttaaaatttggaacaaatctgcactcaaaaatatgtttctatttttcgctgccagcgcaccatcgtgccacgat 4423938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 216
Target Start/End: Original strand, 9021592 - 9021638
Alignment:
Q  170 atcgtgccacgattctgcagaaacctgattttaagttaactctcaca 216  Q
    |||||| ||||||||| |||||  |||||||||||||||||||||||    
T  9021592 atcgtggcacgattctccagaattctgattttaagttaactctcaca 9021638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 117
Target Start/End: Original strand, 28251958 - 28252002
Alignment:
Q  73 gccagcgcaccatcgtgccacgatgagaccccatcgtgccacgat 117  Q
    |||| ||||||||||| |||||||| || ||||||||||||||||    
T  28251958 gccaacgcaccatcgtaccacgatgcgatcccatcgtgccacgat 28252002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 183; Significance: 4e-99; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 32 - 247
Target Start/End: Original strand, 1047315 - 1047534
Alignment:
Q  32 tgtaccaaatctgcacccaaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgcctt 131  Q
    |||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1047315 tgtaacaaatctgctcccaaaaatacgttttatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgcctt 1047414  T
Q  132 gcc----aaactaaaacctccatcgtgccacgttgcccagctatcgtgccacgattctgcagaaacctgattttaagttaactctcacaattctccacct 227  Q
    |||    ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1047415 gcccaaaaaactaaaacctccatcgtgccacgttgcccagccgtcgtgccacgattctgcagaaacctgattttaagttaactctcacaattctccacct 1047514  T
Q  228 tgacttcaaatcagtgatga 247  Q
    ||||||||||||||||||||    
T  1047515 tgacttcaaatcagtgatga 1047534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 32 - 247
Target Start/End: Complemental strand, 22137066 - 22136847
Alignment:
Q  32 tgtaccaaatctgcacccaaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgcctt 131  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  22137066 tgtaacaaatctgctcccaaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgcctt 22136967  T
Q  132 gcc----aaactaaaacctccatcgtgccacgttgcccagctatcgtgccacgattctgcagaaacctgattttaagttaactctcacaattctccacct 227  Q
    |||    |||||||||||||||||||||| ||  |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  22136966 gcccaaaaaactaaaacctccatcgtgccgcgaagcccagctgtcgtgccacgattgtgcagaaacctgattttaagttaactctcacaattctccacct 22136867  T
Q  228 tgacttcaaatcagtgatga 247  Q
    ||||||||||||||||||||    
T  22136866 tgacttcaaatcagtgatga 22136847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 32 - 247
Target Start/End: Complemental strand, 40552093 - 40551874
Alignment:
Q  32 tgtaccaaatctgcacccaaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgcctt 131  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  40552093 tgtaacaaatctgctcccaaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgcctt 40551994  T
Q  132 gcc----aaactaaaacctccatcgtgccacgttgcccagctatcgtgccacgattctgcagaaacctgattttaagttaactctcacaattctccacct 227  Q
    |||    |||||||||||||||||||||| ||  |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  40551993 gcccaaaaaactaaaacctccatcgtgccgcgaagcccagctgtcgtgccacgattgtgcagaaacctgattttaagttaactctcacaattctccacct 40551894  T
Q  228 tgacttcaaatcagtgatga 247  Q
    ||||||||||||||||||||    
T  40551893 tgacttcaaatcagtgatga 40551874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 32 - 217
Target Start/End: Complemental strand, 22108055 - 22107866
Alignment:
Q  32 tgtaccaaatctgcacccaaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgcctt 131  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  22108055 tgtaacaaatctgctcccaaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgcctt 22107956  T
Q  132 gcc----aaactaaaacctccatcgtgccacgttgcccagctatcgtgccacgattctgcagaaacctgattttaagttaactctcacaa 217  Q
    |||    |||||||||||| ||||||||| ||  |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||    
T  22107955 gcccaaaaaactaaaacctgcatcgtgccgcgaagcccagctgtcgtgccacgattgtgcagaaacctgattttaagttaactctcacaa 22107866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 32 - 217
Target Start/End: Complemental strand, 40549815 - 40549626
Alignment:
Q  32 tgtaccaaatctgcacccaaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgcctt 131  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  40549815 tgtaacaaatctgctcccaaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgcctt 40549716  T
Q  132 gcc----aaactaaaacctccatcgtgccacgttgcccagctatcgtgccacgattctgcagaaacctgattttaagttaactctcacaa 217  Q
    |||    |||||||||||| ||||||||| ||  |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||    
T  40549715 gcccaaaaaactaaaacctgcatcgtgccgcgaagcccagctgtcgtgccacgattgtgcagaaacctgattttaagttaactctcacaa 40549626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 32 - 216
Target Start/End: Original strand, 9027499 - 9027687
Alignment:
Q  32 tgtaccaaatctgcacccaaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgcctt 131  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  9027499 tgtaacaaatctgctcccaaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgcctt 9027598  T
Q  132 gcc----aaactaaaacctccatcgtgccacgttgcccagctatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 216  Q
    |||    |||||||||||||||||||||| ||  |||||||  ||||||||||||| ||||||||||||||||||||||||||||||||    
T  9027599 gcccaaaaaactaaaacctccatcgtgccgcgaagcccagccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 9027687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 32 - 216
Target Start/End: Complemental strand, 2935258 - 2935070
Alignment:
Q  32 tgtaccaaatctgcacccaaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgcctt 131  Q
    |||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  2935258 tgtaacaaatctgctctcaaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgcctt 2935159  T
Q  132 gcc----aaactaaaacctccatcgtgccacgttgcccagctatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 216  Q
    |||    |||||||||||||||||||||| ||  |||||||  ||||||||||||| ||||||||||||||||||||||||||||||||    
T  2935158 gcccaaaaaactaaaacctccatcgtgccgcgaagcccagccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 2935070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 37 - 247
Target Start/End: Complemental strand, 44498 - 44283
Alignment:
Q  37 caaatctgcacccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgccttgc-- 133  Q
    ||||||||||||||||||||||||| | || ||  | ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||      
T  44498 caaatctgcacccaaaaatatgtttatgttatttgctgccagcgcaccatcgtgccacgatgcgaccccatcgtgccatgatttttccagtgctttgcgt 44399  T
Q  134 caaacta-aaacctcca-tcgtgccacgttgcccagctatcgtgccacgattc-tgcagaaacctgattttaagttaactctcacaattctccaccttga 230  Q
    ||||||  ||||||||| ||||||||| ||||||||  ||||||||||||||| ||||||  | ||||||||||||||||||||||||||||||||||||    
T  44398 caaacttgaaacctccaatcgtgccacattgcccagaaatcgtgccacgattcctgcagat-cttgattttaagttaactctcacaattctccaccttga 44300  T
Q  231 cttcaaatcagtgatga 247  Q
    |||||||||| ||||||    
T  44299 cttcaaatcaatgatga 44283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 73 - 216
Target Start/End: Complemental strand, 3878469 - 3878322
Alignment:
Q  73 gccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgccttgcc--aaacta-aaacctcca-tcgtgccacgttgcccagc 168  Q
    ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||||  |||||  ||||||||| |||||||||||||||||||    
T  3878469 gccagcgtaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgctttgcctcaaacttgaaacctccaatcgtgccacgttgcccagc 3878370  T
Q  169 tatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 216  Q
     ||||||||||||||||||||||| |||||||||||||||||||||||    
T  3878369 catcgtgccacgattctgcagaaatctgattttaagttaactctcaca 3878322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 22 - 216
Target Start/End: Original strand, 27306569 - 27306767
Alignment:
Q  22 gctttaaatttgtaccaaatctgcacccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttt 120  Q
    |||| ||||||| | |||||||||||||||||||| |||| | || ||  | || |||||||||||||||||||| | ||||||||||||||||||||||    
T  27306569 gcttaaaatttggaacaaatctgcacccaaaaatacgtttctgttattcgctgctagcgcaccatcgtgccacgaagcgaccccatcgtgccacgatttt 27306668  T
Q  121 tccagtgccttgcc---aaactaaaacctcc-atcgtgccacgttgcccagctatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 216  Q
    |||| || ||||||   ||||| |||||||| |||||||||||||| ||||| |||||||||||||| |||| |||||| ||||||||||||||||||||    
T  27306669 tccaatgacttgcctcaaaactgaaacctccaatcgtgccacgttgtccagccatcgtgccacgattttgca-aaaccttattttaagttaactctcaca 27306767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 103 - 221
Target Start/End: Original strand, 40837144 - 40837266
Alignment:
Q  103 ccatcgtgccacgatttttccagtgccttgcc----aaactaaaacctccatcgtgccacgttgcccagctatcgtgccacgattctgcagaaacctgat 198  Q
    ||||||||||||||||||||||||||||||||    ||||| |||||||||||||||||||||| ||  | |||||||||||||||||||||||||||||    
T  40837144 ccatcgtgccacgatttttccagtgccttgcctaaaaaactgaaacctccatcgtgccacgttgtccgaccatcgtgccacgattctgcagaaacctgat 40837243  T
Q  199 tttaagttaactctcacaattct 221  Q
    |||||||||||||||||| ||||    
T  40837244 tttaagttaactctcacagttct 40837266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 73 - 216
Target Start/End: Complemental strand, 25542427 - 25542281
Alignment:
Q  73 gccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgccttgcc---aaactaaaacctcc-atcgtgccacgttgcccagc 168  Q
    ||||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||||   ||||| |||||||| ||||||||||||||||||||    
T  25542427 gccagcgcaccatcgtgccacgatgcgatcccatcgtgccacgatttttcaagtgccttgccttaaaactgaaacctccaatcgtgccacgttgcccagc 25542328  T
Q  169 tatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 216  Q
     ||||||||||  | |||||| | | ||||||||||||||||||||||    
T  25542327 aatcgtgccacattcctgcag-atcttgattttaagttaactctcaca 25542281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 103 - 217
Target Start/End: Complemental strand, 26804462 - 26804344
Alignment:
Q  103 ccatcgtgccacgatttttccagtgccttgcc---aaactaaaacctcca-tcgtgccacgttgcccagctatcgtgccacgattctgcagaaacctgat 198  Q
    |||||||||||||||||||||| |||||||||   ||||| ||||||||| |||| |||||||||||||| ||||||||||||||||| |||||||||||    
T  26804462 ccatcgtgccacgatttttccactgccttgcctcaaaactgaaacctccaatcgtaccacgttgcccagccatcgtgccacgattctgtagaaacctgat 26804363  T
Q  199 tttaagttaactctcacaa 217  Q
    |||||||||||||||||||    
T  26804362 tttaagttaactctcacaa 26804344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 22 - 218
Target Start/End: Complemental strand, 35578 - 35377
Alignment:
Q  22 gctttaaatttgtaccaaatctgcacccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttt 120  Q
    |||| ||||||| | |||||||||||||||||||| |||| |  | ||  | |||||||||| |||| ||||||||| ||||||||||||||||||||||    
T  35578 gcttaaaatttggaacaaatctgcacccaaaaatacgtttctgctatttgctgccagcgcacgatcgggccacgatgcgaccccatcgtgccacgatttt 35479  T
Q  121 tccagtgccttgc--caaac-taaaacctcc-atcgtgccacgttgcccagctatcgtgccacgatt-ctgcagaaacctgattttaagttaactctcac 215  Q
    |||||||| ||||  ||||| | |||||||| |||||||||||||||| ||| |||||||||||||| |||||| | | |||||||||||||||||||||    
T  35478 tccagtgctttgcctcaaacttgaaacctccaatcgtgccacgttgcctagcaatcgtgccacgattcctgcag-atcttgattttaagttaactctcac 35380  T
Q  216 aat 218  Q
    |||    
T  35379 aat 35377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 73 - 216
Target Start/End: Complemental strand, 18567510 - 18567363
Alignment:
Q  73 gccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgccttgcc---aaactaaaacctcc-atcgtgccacgttgcccagc 168  Q
    |||||||||||||||||||| | || ||||||||||||||||||    ||||||| ||||||   ||||| |||||||| |||||||||| |||||||||    
T  18567510 gccagcgcaccatcgtgccaagttgtgaccccatcgtgccacgaaaaatccagtgacttgcctcaaaactgaaacctccaatcgtgccactttgcccagc 18567411  T
Q  169 tatcgtgccacga-ttctgcagaaacctgattttaagttaactctcaca 216  Q
    ||||||||||||| ||||| || ||||||||||||||| ||||||||||    
T  18567410 tatcgtgccacgatttctgtag-aacctgattttaagtcaactctcaca 18567363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 73 - 216
Target Start/End: Original strand, 31435439 - 31435586
Alignment:
Q  73 gccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgccttgcc---aaactaaaacctcc-atcgtgccacgttgcccagc 168  Q
    |||||||||||||||||||| | || ||||||||||||||||||    ||||||| ||||||   ||||| |||||||| |||||||||| |||||||||    
T  31435439 gccagcgcaccatcgtgccaagttgtgaccccatcgtgccacgaaaaatccagtgacttgcctcaaaactgaaacctccaatcgtgccactttgcccagc 31435538  T
Q  169 tatcgtgccacga-ttctgcagaaacctgattttaagttaactctcaca 216  Q
    ||||||||||||| ||||| || ||||||||||||||| ||||||||||    
T  31435539 tatcgtgccacgatttctgtag-aacctgattttaagtcaactctcaca 31435586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 170 - 247
Target Start/End: Complemental strand, 30246688 - 30246611
Alignment:
Q  170 atcgtgccacgattctgcagaaacctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatga 247  Q
    |||||| ||||||||| ||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30246688 atcgtggcacgattctccagatttctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatga 30246611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 106 - 216
Target Start/End: Original strand, 1049699 - 1049813
Alignment:
Q  106 tcgtgccacgatttttccagtgccttgcc---aaactaaaacctcca-tcgtgccacgttgcccagctatcgtgccacgatt-ctgcagaaacctgattt 200  Q
    ||||||||||||||||||||| ||||||    ||||| ||||||||| ||||||||||||||||||| |||||||||||||| |||||| | | ||||||    
T  1049699 tcgtgccacgatttttccagtaccttgcttcaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacgattcctgcag-atcttgattt 1049797  T
Q  201 taagttaactctcaca 216  Q
    ||||||||||||||||    
T  1049798 taagttaactctcaca 1049813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 194 - 247
Target Start/End: Complemental strand, 7074462 - 7074409
Alignment:
Q  194 ctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatga 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7074462 ctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatga 7074409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 194 - 247
Target Start/End: Complemental strand, 25405068 - 25405015
Alignment:
Q  194 ctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatga 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25405068 ctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatga 25405015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 170 - 247
Target Start/End: Complemental strand, 25409849 - 25409772
Alignment:
Q  170 atcgtgccacgattctgcagaaacctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatga 247  Q
    |||||| ||||||||| ||||   ||||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  25409849 atcgtggcacgattctccagatttctgattttaagttaacttttacaattctccaccttgacttcaaatcagtgatga 25409772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 194 - 247
Target Start/End: Original strand, 3320557 - 3320611
Alignment:
Q  194 ctgattttaagttaact-ctcacaattctccaccttgacttcaaatcagtgatga 247  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  3320557 ctgattttaagttaacttctcacaattctccaccttgacttcaaatcagtgatga 3320611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 127
Target Start/End: Complemental strand, 40946244 - 40946167
Alignment:
Q  50 aaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtg 127  Q
    ||||||||||||||||||||||  | | |||||||||||| ||||||  || || |||||| ||||||||||||||||    
T  40946244 aaaaatatgttttatttttatcttcaatcgcaccatcgtggcacgattcgatccaatcgtgacacgatttttccagtg 40946167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 170 - 222
Target Start/End: Original strand, 7464983 - 7465035
Alignment:
Q  170 atcgtgccacgattctgcagaaacctgattttaagttaactctcacaattctc 222  Q
    |||||| ||||||||| |||||  |||||||||||||||||||||||||||||    
T  7464983 atcgtggcacgattctccagaattctgattttaagttaactctcacaattctc 7465035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 96
Target Start/End: Original strand, 1049635 - 1049710
Alignment:
Q  22 gctttaaatttgtaccaaatctgcacccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgat 96  Q
    |||| ||||||| | |||||||||||||||||||| |||| | || ||  ||||||||||||| ||||||||||||    
T  1049635 gcttaaaatttggaacaaatctgcacccaaaaatacgtttctgttattcgccgccagcgcaccttcgtgccacgat 1049710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 216
Target Start/End: Complemental strand, 48457487 - 48457441
Alignment:
Q  170 atcgtgccacgattctgcagaaacctgattttaagttaactctcaca 216  Q
    |||||| ||||||||| |||||  |||||||||||||||||||||||    
T  48457487 atcgtggcacgattctccagaattctgattttaagttaactctcaca 48457441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 214
Target Start/End: Complemental strand, 40946120 - 40946076
Alignment:
Q  170 atcgtgccacgattctgcagaaacctgattttaagttaactctca 214  Q
    |||||| ||||||||| |||||  |||||||||||||||||||||    
T  40946120 atcgtggcacgattcttcagaattctgattttaagttaactctca 40946076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 46)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 32 - 247
Target Start/End: Original strand, 16932172 - 16932391
Alignment:
Q  32 tgtaccaaatctgcacccaaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgcctt 131  Q
    |||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16932172 tgtaacaaatctgctcccaaaaatacgttttatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgcctt 16932271  T
Q  132 gcc----aaactaaaacctccatcgtgccacgttgcccagctatcgtgccacgattctgcagaaacctgattttaagttaactctcacaattctccacct 227  Q
    |||    ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16932272 gcccaaaaaactaaaacctccatcgtgccacgttgcccagccgtcgtgccacgattctgcagaaacctgattttaagttaactctcacaattctccacct 16932371  T
Q  228 tgacttcaaatcagtgatga 247  Q
    ||||||||||||||||||||    
T  16932372 tgacttcaaatcagtgatga 16932391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 32 - 247
Target Start/End: Original strand, 22780764 - 22780983
Alignment:
Q  32 tgtaccaaatctgcacccaaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgcctt 131  Q
    |||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  22780764 tgtaacaaatctgctcccaaaaatacgttttatttttatccgccagcgcaccatcgtgccacaatgagaccccatcgtgccatgatttttccagtgcctt 22780863  T
Q  132 gcc----aaactaaaacctccatcgtgccacgttgcccagctatcgtgccacgattctgcagaaacctgattttaagttaactctcacaattctccacct 227  Q
    |||    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22780864 gcccaaaaaactaaaacctccatcgtgccacgttgcccagctatcgtaccacgattctgcagaaacctgattttaagttaactctcacaattctccacct 22780963  T
Q  228 tgacttcaaatcagtgatga 247  Q
    ||||||||||| ||||||||    
T  22780964 tgacttcaaattagtgatga 22780983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 20 - 247
Target Start/End: Original strand, 11006579 - 11006812
Alignment:
Q  20 ttgctttaaatttgtaccaaatctgcacccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatt 118  Q
    |||||| |||| |||| ||||||||||||||||||||||||| | |||||  | ||||||||||||||||||||||||| ||||||||||||||||||||    
T  11006579 ttgcttaaaatctgtaacaaatctgcacccaaaaatatgtttctgttttttgctgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatt 11006678  T
Q  119 tttccagtgccttgcc----aaactaaaacctccatcgtgccacgttgcccagctatcgtgccacgattctgca-gaaacctgattttaagttaactctc 213  Q
    ||||||||||||||||    ||| | |||||||||||||||||||||||||||| |||||||||||||||||||  ||||||||||||||||||||||||    
T  11006679 tttccagtgccttgcctaaaaaattgaaacctccatcgtgccacgttgcccagcgatcgtgccacgattctgcataaaacctgattttaagttaactctc 11006778  T
Q  214 acaattctccaccttgacttcaaatcagtgatga 247  Q
    ||||||||||||||||||||||||||||||||||    
T  11006779 acaattctccaccttgacttcaaatcagtgatga 11006812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 32 - 216
Target Start/End: Original strand, 22783129 - 22783317
Alignment:
Q  32 tgtaccaaatctgcacccaaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgcctt 131  Q
    |||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  22783129 tgtaacaaatctgctcccaaaaatacgttttatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccatgatttttccagtgcctt 22783228  T
Q  132 gcc----aaactaaaacctccatcgtgccacgttgcccagctatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 216  Q
    |||    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  22783229 gcccaaaaaactaaaacctccatcgtgccacgttgcccagctatcgtaccacgattctgcagaaacctgattttaagttaactctcaca 22783317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 32 - 247
Target Start/End: Original strand, 9174496 - 9174715
Alignment:
Q  32 tgtaccaaatctgcacccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgcct 130  Q
    |||| ||||||||||||||||||||||||| | |||||  | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  9174496 tgtaacaaatctgcacccaaaaatatgtttctgtttttccctgccagcgcaccatcgtgccacgatgagaccccatcgtgccatgatttttccagtgcct 9174595  T
Q  131 tgcc----aaactaaaacctccatcgtgccacgttgcccagctatcgtgccacgattctgcagaaacctgattttaagttaactctcacaattctccacc 226  Q
    ||||    ||||||||||||||||||||| |||||||| |||  ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  9174596 tgcctaataaactaaaacctccatcgtgctacgttgcctagccgtcgtgccacgattctgcag-aacctgattttaagttaactctcacaattctccacc 9174694  T
Q  227 ttgacttcaaatcagtgatga 247  Q
    |||||||||||||||||||||    
T  9174695 ttgacttcaaatcagtgatga 9174715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 9176815 - 9177035
Alignment:
Q  1 cttaaaatctttaacatatttgctttaaatttgtaccaaatctgcacccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgag 99  Q
    ||||||| || ||||| || |||||||||||| || ||||||||||||||||||||||||| | |||||  | |||||||||||||||||||||||||||    
T  9176815 cttaaaaactgtaacaaatctgctttaaatttataacaaatctgcacccaaaaatatgtttctgtttttccctgccagcgcaccatcgtgccacgatgag 9176914  T
Q  100 accccatcgtgccacgatttttccagtgccttgcc----aaactaaaacctccatcgtgccacgttgcccagctatcgtgccacgattctgcagaaacct 195  Q
    |||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||| | |  |||||||||||||||||||||||||    
T  9176915 accccatcgtgccacgatttttccagtgccttgcctaaaaaactaaaacctccatcgtgccacgttgcctaaccgtcgtgccacgattctgcagaaacct 9177014  T
Q  196 gattttaagttaactctcaca 216  Q
    |||||||||||||||||||||    
T  9177015 gattttaagttaactctcaca 9177035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 32 - 216
Target Start/End: Original strand, 16934526 - 16934714
Alignment:
Q  32 tgtaccaaatctgcacccaaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgcctt 131  Q
    |||| ||||||||| |||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  16934526 tgtaacaaatctgctcccaaaaatacgttttatttttatccgacagcgcaccatcgtgccaggatgagaccccatcgtgccacgatttttccagtgcctt 16934625  T
Q  132 gcc----aaactaaaacctccatcgtgccacgttgcccagctatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 216  Q
    |||    ||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  16934626 gcccaaaaaactaaaacctccatcgtgccatgttgcccagccgtcgtgccacgattctgcagaaacctgattttaagttaactctcaca 16934714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 22 - 247
Target Start/End: Original strand, 36919927 - 36920156
Alignment:
Q  22 gctttaaatttgtaccaaatctgcacccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttt 120  Q
    |||| ||||||| | |||||||||||||||||||| |||| || | ||  | ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  36919927 gcttaaaatttggaacaaatctgcacccaaaaatacgtttctactattcgctgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttt 36920026  T
Q  121 tccagtgccttgcc---aaactaaaacctcca-tcgtgccacgttgcccagctatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 216  Q
    ||||||| ||||||   ||| | ||||||||| ||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||    
T  36920027 tccagtgacttgcctcaaaattgaaacctccaatcgtgccacgttgcccagccatcgtgccacgattttgcagaa-cctgattttaagttaactctcaca 36920125  T
Q  217 attctccaccttgacttcaaatcagtgatga 247  Q
    |||||||||||||||||||||||||||||||    
T  36920126 attctccaccttgacttcaaatcagtgatga 36920156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 20 - 247
Target Start/End: Original strand, 3824911 - 3825143
Alignment:
Q  20 ttgctttaaatttgtaccaaatctgcacccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatt 118  Q
    |||||| ||||||| | |||||||||||||||||||| |||| | || ||   ||||| |||||||||||||||||||| |||||||| |||||| ||||    
T  3824911 ttgcttaaaatttggaacaaatctgcacccaaaaatacgtttctgttattcgtcgccaacgcaccatcgtgccacgatgcgaccccattgtgccatgatt 3825010  T
Q  119 tttccagtgccttgcc---aaactaaaacctcca-tcgtgccacgttgcccagctatcgtgccacgattctgcagaaacctgattttaagttaactctca 214  Q
    |||||||||| |||||   ||||| ||||||||| |||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  3825011 tttccagtgctttgcctcaaaactgaaacctccaatcgtgccatgttgcccagccatcgtgtcacgattctgcagaaacctgattttaagttaactctca 3825110  T
Q  215 caattctccaccttgacttcaaatcagtgatga 247  Q
    ||||| || ||||||||||||||||||||||||    
T  3825111 caattgtcaaccttgacttcaaatcagtgatga 3825143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 18847145 - 18846922
Alignment:
Q  1 cttaaaatctttaacatatttgctttaaatttgtaccaaatctgcacccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgag 99  Q
    |||||||||| ||||| || ||||||||||||||| ||||||||||||||||||||||||| | |||||  |||| |||||||||||||||||||||| |    
T  18847145 cttaaaatctgtaacaaatctgctttaaatttgtaacaaatctgcacccaaaaatatgtttctgtttttccccgcgagcgcaccatcgtgccacgatgcg 18847046  T
Q  100 accccatcgtgccacgatttttccagtgccttgcc---aaactaaaacctcc-atcgtgccacgttgcccagctatcgtgccacgattctgcag--aaac 193  Q
    |||||||||| |||||||||||||||| |||||||   ||||| |||||||| ||||||||||| | |||| | ||||||||||||||||||||  |||     
T  18847045 accccatcgtaccacgatttttccagtaccttgcctcaaaactgaaacctccaatcgtgccacgattcccaacaatcgtgccacgattctgcagaaaaat 18846946  T
Q  194 ctgattttaagttaactctcacaa 217  Q
    ||||||||||||||||||||||||    
T  18846945 ctgattttaagttaactctcacaa 18846922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 22 - 247
Target Start/End: Original strand, 22044730 - 22044961
Alignment:
Q  22 gctttaaatttgtaccaaatctgcacccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttt 120  Q
    |||| ||||||| | |||||||||||  |||||||||||| | |||||  | |||||| |||||||||||||||||| || |||||||||||||||||||    
T  22044730 gcttaaaatttggaacaaatctgcact-aaaaatatgtttctgtttttccctgccagcacaccatcgtgccacgatgcgatcccatcgtgccacgatttt 22044828  T
Q  121 tccagtgccttgcc------aaactaaaacctccatcgtgccacgttgcccagctatcgtgccacgattc-tgcagaaacctgattttaagttaactctc 213  Q
    ||||||||||||||      ||| | |||||||||||||||||||||||||  | ||||||||||||||| ||||||  | |||||||||||||||||||    
T  22044829 tccagtgccttgcctcaaaaaaaatgaaacctccatcgtgccacgttgcccttcaatcgtgccacgattcctgcagat-cttgattttaagttaactctc 22044927  T
Q  214 acaattctccaccttgacttcaaatcagtgatga 247  Q
    ||||||||||||||||||||||||||||||||||    
T  22044928 acaattctccaccttgacttcaaatcagtgatga 22044961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 22 - 217
Target Start/End: Complemental strand, 38409192 - 38408992
Alignment:
Q  22 gctttaaatttgtaccaaatctgcacccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttt 120  Q
    |||| ||||||| | ||||||||||| ||||||||||||| | |||||  |||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  38409192 gcttaaaatttggaacaaatctgcactcaaaaatatgtttctgtttttcgccgccaacgcaccatcgtgccacgatgcgaccccatcgtgccacgatttt 38409093  T
Q  121 tccagtgccttgcc--aaacta-aaacctcca-tcgtgccacgttgcccagctatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 216  Q
    |||||||| |||||  |||||  ||||||||| |||||||||| |||||||| ||||||||||||||||||||||| || ||||||||||||||||||||    
T  38409092 tccagtgctttgcctcaaacttgaaacctccaatcgtgccacgatgcccagcaatcgtgccacgattctgcagaaatctaattttaagttaactctcaca 38408993  T
Q  217 a 217  Q
    |    
T  38408992 a 38408992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 22 - 219
Target Start/End: Complemental strand, 51015239 - 51015037
Alignment:
Q  22 gctttaaatttgtaccaaatctgcacccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttt 120  Q
    |||| ||||||| | |||||||||||  |||||||||||| | || ||  | ||||||||||||||||||||||||| |||||||||||||||| |||||    
T  51015239 gcttaaaatttggaacaaatctgcactgaaaaatatgtttctgttattcgctgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacaatttt 51015140  T
Q  121 tccagtgccttgcc----aaactaaaacctccatcgtgccacgttgcccagctatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 216  Q
    ||||||||||||||    ||||| ||||||||||||||||||||||||  || ||| ||||||||||||||||||| ||||||||||||||||||||| |    
T  51015139 tccagtgccttgcctaaaaaactgaaacctccatcgtgccacgttgccttgccatcatgccacgattctgcagaaatctgattttaagttaactctcaga 51015040  T
Q  217 att 219  Q
    |||    
T  51015039 att 51015037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 22 - 216
Target Start/End: Original strand, 5637809 - 5638006
Alignment:
Q  22 gctttaaatttgtaccaaatctgcacccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttt 120  Q
    |||| ||||||| | ||||||||||||||||| || |||| | |||||  | |||||| ||||||| |||||||||| || ||||||||| || ||||||    
T  5637809 gcttaaaatttggaacaaatctgcacccaaaa-tacgtttctgtttttcgctgccagctcaccatcatgccacgatgcgatcccatcgtgacatgatttt 5637907  T
Q  121 tccagtgccttgcc---aaactaaaacctccatcgtgccacgttgcccagctatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 216  Q
    ||||||||||||||   ||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||    
T  5637908 tccagtgccttgcctcaaaactgaaacctccatcgtgccacgttgcccagcaatcgtgccacgattccgcagaaacctgattttaagttaactctcaca 5638006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 19 - 212
Target Start/End: Original strand, 37089711 - 37089910
Alignment:
Q  19 tttgctttaaatttgtaccaaatctgcacccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgat 117  Q
    ||||||| ||||||| | |||||||||||| ||||||| |||| | || ||  ||||||||||||||||||||||||||| |||||||||||||||||||    
T  37089711 tttgcttaaaatttggaacaaatctgcacctaaaaatacgtttctgttattcgccgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgat 37089810  T
Q  118 ttttccagtgccttgcc----aaactaaaacctc-catcgtgccacgttgcccagctatcgtgccacgattctgcagaaacctgattttaagttaactct 212  Q
    |||||||||||||  ||    |||||||||| || |||||||||||||||||  || ||||||||||||||||||||||| |||||||||||||||||||    
T  37089811 ttttccagtgcctcacctaaaaaactaaaacatctcatcgtgccacgttgccttgccatcgtgccacgattctgcagaaatctgattttaagttaactct 37089910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 20 - 212
Target Start/End: Complemental strand, 24888791 - 24888594
Alignment:
Q  20 ttgctttaaatttgtaccaaatctgcacccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatt 118  Q
    |||||| ||||||| | ||||||||||| ||||||||||||| | |||||  | |||||| |||||||||||||||||| || |||||||||||||||||    
T  24888791 ttgcttaaaatttggaacaaatctgcactcaaaaatatgtttctgtttttcgctgccagcacaccatcgtgccacgatgcgatcccatcgtgccacgatt 24888692  T
Q  119 tttccagtgccttgcc--aaacta-aaacctcca-tcgtgccacgttgcccagctatcgtgccacgattctgcagaaacctgattttaagttaactct 212  Q
    |||||||||| |||||  |||||  ||||||||| ||||||||||||||| ||| |||||||||| |||||||||||| |||||||||||||||||||    
T  24888691 tttccagtgctttgcctcaaacttgaaacctccaatcgtgccacgttgcctagccatcgtgccacaattctgcagaaatctgattttaagttaactct 24888594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 22 - 216
Target Start/End: Original strand, 31849939 - 31850138
Alignment:
Q  22 gctttaaatttgtaccaaatctgcacccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttt 120  Q
    |||| ||||||| | ||||||||||| ||||||||||||| | |||||  | ||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  31849939 gcttaaaatttggaacaaatctgcactcaaaaatatgtttctgtttttcgctgccagcgcaccatcgtgccacgatgcgaccccatcgtgccaagatttt 31850038  T
Q  121 tccagtgccttgcc---aaactaaaacctcc-atcgtgccacgttgcccagctatcgtgccacgatt-ctgcagaaacctgattttaagttaactctcac 215  Q
    ||||||||||||||   ||||| |||||||| |||||||||||||||||||| |||||||||| ||| |||||| | | |||||||||||||||||||||    
T  31850039 tccagtgccttgccccaaaactgaaacctccaatcgtgccacgttgcccagcaatcgtgccacaattcctgcag-atcttgattttaagttaactctcac 31850137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 103 - 216
Target Start/End: Complemental strand, 7941251 - 7941133
Alignment:
Q  103 ccatcgtgccacgatttttccagtgccttgcc-----aaactaaaacctccatcgtgccacgttgcccagctatcgtgccacgattctgcagaaacctga 197  Q
    |||||||||||| |||||||||||||||||||     ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  7941251 ccatcgtgccaccatttttccagtgccttgcctcaaaaaactgaaacctccatcgtgccacgttgcccagccatcgtgccacgattctgcagaaacctga 7941152  T
Q  198 ttttaagttaactctcaca 216  Q
    |||||||||||||||||||    
T  7941151 ttttaagttaactctcaca 7941133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 73 - 214
Target Start/End: Original strand, 22803125 - 22803270
Alignment:
Q  73 gccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgccttgcc---aaactaaaacctcc-atcgtgccacgttgcccagc 168  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||   ||||| |||||||| ||||||||||||||||||||    
T  22803125 gccagcgcaccatcgtgccacgatgcgaccccatcgagccacgatttttccagtgcctttcctcaaaactgaaacctccaatcgtgccacgttgcccagc 22803224  T
Q  169 tatcgtgccacgattctgcagaaacctgattttaagttaactctca 214  Q
     ||||| ||||||||||  |||||  ||||||||||||||||||||    
T  22803225 catcgtaccacgattctatagaaatttgattttaagttaactctca 22803270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 103 - 216
Target Start/End: Complemental strand, 11434887 - 11434769
Alignment:
Q  103 ccatcgtgccacgatttttccagtgccttgcc-----aaactaaaacctccatcgtgccacgttgcccagctatcgtgccacgattctgcagaaacctga 197  Q
    ||||||||||||||||||||||||| ||||||     ||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  11434887 ccatcgtgccacgatttttccagtgtcttgcctcaaaaaactgaaacctccatcgtgccacgttgcccagccatcgtaccacgattctgcagaaacctga 11434788  T
Q  198 ttttaagttaactctcaca 216  Q
    |||||||||||||||||||    
T  11434787 ttttaagttaactctcaca 11434769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 22 - 216
Target Start/End: Original strand, 36921835 - 36922033
Alignment:
Q  22 gctttaaatttgtaccaaatctgcacccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttt 120  Q
    |||| ||||||| | |||||||||| ||||||||| |||| | || ||  | ||||  ||||||||||||||| ||| ||||||||||||||||||||||    
T  36921835 gcttaaaatttggaacaaatctgcatccaaaaatacgtttctgttattcgctgccaatgcaccatcgtgccacaatgcgaccccatcgtgccacgatttt 36921934  T
Q  121 tccagtgccttgcc---aaactaaaacctcc-atcgtgccacgttgcccagctatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 216  Q
    ||||||| ||||||   ||||| |||||||| ||||||||| |||||||||| ||||| |||||||| ||||| ||||||||||||||||||||||||||    
T  36921935 tccagtgacttgcctcaaaactgaaacctccaatcgtgccatgttgcccagccatcgtaccacgattttgcag-aacctgattttaagttaactctcaca 36922033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 11008911 - 11009045
Alignment:
Q  1 cttaaaatctttaacatatttgctttaaatttgtaccaaatctgcacccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgag 99  Q
    |||||||||| ||||| || ||||| |||| |||| ||||||||||||||||||||||||| | |||||  | ||||| ||||||||||||||||||| |    
T  11008911 cttaaaatctgtaacaaatctgcttaaaatctgtaacaaatctgcacccaaaaatatgtttctgttttttgctgccagtgcaccatcgtgccacgatgcg 11009010  T
Q  100 accccatcgtgccacgatttttccagtgccttgcc 134  Q
    |||||||||||||||||||||||||||||||||||    
T  11009011 accccatcgtgccacgatttttccagtgccttgcc 11009045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 22 - 217
Target Start/End: Complemental strand, 48486312 - 48486112
Alignment:
Q  22 gctttaaatttgtaccaaatctgcacccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttt 120  Q
    |||| ||||||| | |||||||||||||||||||| |||| | || ||  | ||||||||||||| |||||||  || ||||||||||||||||||        
T  48486312 gcttaaaatttggaacaaatctgcacccaaaaatacgtttctgttattcgctgccagcgcaccattgtgccacattgtgaccccatcgtgccacgaaaaa 48486213  T
Q  121 tccagtgccttgcc---aaactaaaacctcc-atcgtgccacgttgcccagctatcgtgccacga-ttctgcagaaacctgattttaagttaactctcac 215  Q
    ||||||| ||||||   ||||| |||||||| ||||||||||||||| |||| |||||||||||| ||||||||  ||||||||||||||||||||||||    
T  48486212 tccagtgacttgcctcaaaactgaaacctccaatcgtgccacgttgctcagccatcgtgccacgatttctgcag-gacctgattttaagttaactctcac 48486114  T
Q  216 aa 217  Q
    ||    
T  48486113 aa 48486112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 22 - 213
Target Start/End: Complemental strand, 5198413 - 5198217
Alignment:
Q  22 gctttaaatttgtaccaaatctgcacccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttt 120  Q
    |||| ||||||| | ||||||||||| ||||||||||||| | |||||  | ||||||||||||||||||||||||| || |||||||||||||||||||    
T  5198413 gcttaaaatttggaacaaatctgcactcaaaaatatgtttctgtttttcgctgccagcgcaccatcgtgccacgatgtgatcccatcgtgccacgatttt 5198314  T
Q  121 tccagtgccttgc--caaac-taaaacctcc-atcgtgccacgttgcccagctatcgtgccacgatt-ctgcagaaacctgattttaagttaactctc 213  Q
    ||||| || ||||  ||||| | ||| |||| |||||||||||||||||||| ||| || || |||| |||||| | | |||||||||||||||||||    
T  5198313 tccagagctttgcctcaaacttgaaatctccaatcgtgccacgttgcccagcaatcatgtcatgattcctgcag-atcttgattttaagttaactctc 5198217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 135 - 239
Target Start/End: Original strand, 22048494 - 22048598
Alignment:
Q  135 aaactaaaacctccatcgtgccacgttgcccagctatcgtgccacgattctgcagaaacctgattttaagttaactctcacaattctccaccttgacttc 234  Q
    ||||| |||||||||||||||||||||||||  | ||||||||||||||||   | | | |||||||||||||||||||||||||||||| |||||||||    
T  22048494 aaactgaaacctccatcgtgccacgttgcccttcaatcgtgccacgattcttgcggatcttgattttaagttaactctcacaattctccaacttgacttc 22048593  T
Q  235 aaatc 239  Q
    |||||    
T  22048594 aaatc 22048598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 82 - 216
Target Start/End: Complemental strand, 9148192 - 9148054
Alignment:
Q  82 ccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgccttgc--caaac-taaaacctcc-atcgtgccacgttgcccagctatcgtgcc 177  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||| ||||  ||||| | |||||||| |||| ||||||||||||||| ||||| ||    
T  9148192 ccatcgtgccacgatgcaaccccatcgtgccacgatttttccagtgctttgcctcaaacttgaaacctccaatcgcgccacgttgcccagcaatcgtacc 9148093  T
Q  178 acgatt-ctgcagaaacctgattttaagttaactctcaca 216  Q
    |||||| ||| || | | ||||||||||||||||||||||    
T  9148092 acgattcctgaag-atcttgattttaagttaactctcaca 9148054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 170 - 247
Target Start/End: Complemental strand, 4884577 - 4884500
Alignment:
Q  170 atcgtgccacgattctgcagaaacctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatga 247  Q
    |||||| ||||||||| ||||   |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  4884577 atcgtggcacgattctccagatttctgattttaagttaactctcacaattctccacattgacttcaaatcagtgatga 4884500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 170 - 247
Target Start/End: Complemental strand, 15316676 - 15316599
Alignment:
Q  170 atcgtgccacgattctgcagaaacctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatga 247  Q
    |||||| ||||||||| ||||   |||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  15316676 atcgtggcacgattctccagatttctgattttaagttaactctcacaattcttcaccttgacttcaaatcagtgatga 15316599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 191 - 247
Target Start/End: Complemental strand, 24880283 - 24880227
Alignment:
Q  191 aacctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatga 247  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  24880283 aacctgattttaagttaactttcacaattctccaccttgacttcaaatcagtgatga 24880227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 193 - 247
Target Start/End: Complemental strand, 4569746 - 4569692
Alignment:
Q  193 cctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatga 247  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  4569746 cctgattttaagttaactctcacaattctccaccttgacttcaaattagtgatga 4569692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 191 - 247
Target Start/End: Complemental strand, 16638574 - 16638518
Alignment:
Q  191 aacctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatga 247  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  16638574 aacctgattttatgttaactctcacaattctccaccttgacttcaaatgagtgatga 16638518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 103 - 193
Target Start/End: Original strand, 22801262 - 22801356
Alignment:
Q  103 ccatcgtgccacgatttttccagtgccttgcc---aaactaaaacctcca-tcgtgccacgttgcccagctatcgtgccacgattctgcagaaac 193  Q
    |||||||||||||||||||||||| |||||||   ||||| ||||||||| ||||| ||||||||||| | ||||||||||||||||| ||||||    
T  22801262 ccatcgtgccacgatttttccagttccttgcctcaaaactgaaacctccaatcgtgtcacgttgcccaaccatcgtgccacgattctgtagaaac 22801356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 82 - 211
Target Start/End: Original strand, 52942869 - 52943002
Alignment:
Q  82 ccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgccttgcc---aaactaaaacctcc-atcgtgccacgttgcccagctatcgtgcc 177  Q
    ||||||||||||| || ||||||||||||||||||  | | ||||| ||||||   || || |||||||| |||||||||||||||||| | ||||||||    
T  52942869 ccatcgtgccacgttgtgaccccatcgtgccacgaaatattcagtgacttgcctcaaagctgaaacctccaatcgtgccacgttgcccaaccatcgtgcc 52942968  T
Q  178 acga-ttctgcagaaacctgattttaagttaactc 211  Q
    |||| || |||| ||||||||||||||||||||||    
T  52942969 acgatttttgca-aaacctgattttaagttaactc 52943002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 22 - 133
Target Start/End: Original strand, 22047025 - 22047135
Alignment:
Q  22 gctttaaatttgtaccaaatctgcacccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttt 120  Q
    |||| ||||||| | |||||||||||  |||||||||||| | |||||  | |||||| |||||||||||||||||| || |||||||||||| ||||||    
T  22047025 gcttaaaatttggaacaaatctgcact-aaaaatatgtttctgtttttccctgccagcacaccatcgtgccacgatgcgatcccatcgtgcca-gatttt 22047122  T
Q  121 tccagtgccttgc 133  Q
    |||||||||||||    
T  22047123 tccagtgccttgc 22047135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 79 - 214
Target Start/End: Original strand, 40091813 - 40091952
Alignment:
Q  79 gcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgccttgcc---aaactaaaacctcca-tcgtgccacgttgcccagctatcgt 174  Q
    ||||||||||| |||| || ||||||||| || ||||||||||||| || ||| |    ||||| ||| ||||| |||||||||||| |||| | | |||    
T  40091813 gcaccatcgtgtcacgttgcgaccccatcatggcacgatttttccaatggcttacttcaaaactgaaatctccaatcgtgccacgttacccaaccaccgt 40091912  T
Q  175 gccacgattct-gcagaaacctgattttaagttaactctca 214  Q
    ||||||||| | |||||| ||||||||||||||||||||||    
T  40091913 gccacgattattgcagaa-cctgattttaagttaactctca 40091952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 115
Target Start/End: Original strand, 52942792 - 52942881
Alignment:
Q  27 aaatttgtaccaaatctgcacccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacg 115  Q
    ||||||| | |||||||||||| |||||||||||| | || ||  | ||||||||| |||||||||||| || |||||||||||||||||    
T  52942792 aaatttggaacaaatctgcaccaaaaaatatgtttatgttattcgctgccagcgcatcatcgtgccacgttgtgaccccatcgtgccacg 52942881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 116
Target Start/End: Original strand, 619811 - 619882
Alignment:
Q  46 acccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacga 116  Q
    |||||||||||||||| | || ||  ||||||||||||||| |||||||| || ||||||||||||||||||    
T  619811 acccaaaaatatgtttctgttattcgccgccagcgcaccattgtgccacgttgcgaccccatcgtgccacga 619882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 170 - 216
Target Start/End: Complemental strand, 8528964 - 8528918
Alignment:
Q  170 atcgtgccacgattctgcagaaacctgattttaagttaactctcaca 216  Q
    |||||| ||||||||| |||||| |||||||||||||||||||||||    
T  8528964 atcgtgacacgattctccagaaatctgattttaagttaactctcaca 8528918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 207 - 244
Target Start/End: Original strand, 22801354 - 22801391
Alignment:
Q  207 aactctcacaattctccaccttgacttcaaatcagtga 244  Q
    |||||||||||||||| |||||||||||||||||||||    
T  22801354 aactctcacaattctctaccttgacttcaaatcagtga 22801391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 127
Target Start/End: Complemental strand, 47868365 - 47868288
Alignment:
Q  50 aaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtg 127  Q
    ||||||| ||||||||||||||  | | ||||| |||||| |||||| ||| || |||||| ||||||||||||||||    
T  47868365 aaaaatacgttttatttttatcttcaatcgcactatcgtggcacgattagatccaatcgtggcacgatttttccagtg 47868288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 216
Target Start/End: Complemental strand, 6764700 - 6764654
Alignment:
Q  170 atcgtgccacgattctgcagaaacctgattttaagttaactctcaca 216  Q
    |||||| ||||||||| |||||  |||||||||||||||||||||||    
T  6764700 atcgtggcacgattctccagaattctgattttaagttaactctcaca 6764654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 127
Target Start/End: Original strand, 16689290 - 16689380
Alignment:
Q  37 caaatctgcacccaaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtg 127  Q
    ||||||| |||  ||||||| |||||  |||||||| | | ||||||||||||||||| || ||   ||||||| ||||||||||||||||    
T  16689290 caaatcttcactgaaaaatacgtttttattttatcctcaatcgcaccatcgtgccacgttgcgatttcatcgtggcacgatttttccagtg 16689380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 216
Target Start/End: Complemental strand, 47868241 - 47868195
Alignment:
Q  170 atcgtgccacgattctgcagaaacctgattttaagttaactctcaca 216  Q
    |||||| ||||||||| |||||  |||||||||||||||||||||||    
T  47868241 atcgtggcacgattctccagaattctgattttaagttaactctcaca 47868195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 123
Target Start/End: Original strand, 4556422 - 4556494
Alignment:
Q  51 aaaatatgttttatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttcc 123  Q
    |||||| ||||||||||||||  | | ||||||||||||||||| || ||   ||||||| ||||||||||||    
T  4556422 aaaatacgttttatttttatcttcaatcgcaccatcgtgccacgttgcgatttcatcgtggcacgatttttcc 4556494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 218
Target Start/End: Complemental strand, 15312040 - 15311992
Alignment:
Q  170 atcgtgccacgattctgcagaaacctgattttaagttaactctcacaat 218  Q
    |||||| ||||||||| ||||   |||||||||||||||||||||||||    
T  15312040 atcgtggcacgattctccagatttctgattttaagttaactctcacaat 15311992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 217 - 245
Target Start/End: Complemental strand, 47747370 - 47747342
Alignment:
Q  217 attctccaccttgacttcaaatcagtgat 245  Q
    |||||||||||||||||||||||||||||    
T  47747370 attctccaccttgacttcaaatcagtgat 47747342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 47179647 - 47179397
Alignment:
Q  1 cttaaaatctttaacatatttgctttaaatttgtaccaaatctgcacccaaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatgaga 100  Q
    |||||||||| ||||| || | ||| |||| |||| ||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  47179647 cttaaaatctgtaacaaatctacttaaaatctgtaacaaatctgctcccaaaaatacgttttatttttatccgcaagcgcaccatcgtgccacgatgaga 47179548  T
Q  101 ccccatcgtgccacgatttttccagtgccttgcc----aaactaaaacctccatcgtgccacgttgcccagctatcgtgccacgattctgcagaaacctg 196  Q
    ||||||||||||||||||||| ||||||||||||    ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  47179547 ccccatcgtgccacgattttttcagtgccttgcccaaaaaactaaaacctccatcgtgccacgttgcccagccgtcgtgccacgattctgcagaaacctg 47179448  T
Q  197 attttaagttaactctcacaattctccaccttgacttcaaatcagtgatga 247  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47179447 attttaagttaactctcacaattctccaccttgacttcaaatcagtgatga 47179397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 47177296 - 47177076
Alignment:
Q  1 cttaaaatctttaacatatttgctttaaatttgtaccaaatctgcacccaaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatgaga 100  Q
    |||||||||| ||||| || | ||| |||| |||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  47177296 cttaaaatctgtaacaaatctacttaaaatctgtaacaaatctgctcccaaaaataggttttatttttatccgccagcgcaccatcgtgccacgatgaga 47177197  T
Q  101 ccccatcgtgccacgatttttccagtgccttgcc---aaactaaaacctccatcgtgccacgttgcccagctatcgtgccacgattctgcagaaacctga 197  Q
    ||||||||||||||||||||||||||| ||||||   |||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||    
T  47177196 ccccatcgtgccacgatttttccagtgtcttgcccaaaaactaaaacctccatcgtgccacgttgcccagtcgtcgtgccacgattctgcagaaacctga 47177097  T
Q  198 ttttaagttaactctcacaat 218  Q
    |||||||||||||||||||||    
T  47177096 ttttaagttaactctcacaat 47177076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 22 - 247
Target Start/End: Complemental strand, 51752304 - 51752073
Alignment:
Q  22 gctttaaatttgtaccaaatctgcacccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttt 120  Q
    |||| ||||||| | |||||||||||||||||||| |||| | || ||  ||||||||||||||||||||||||||| | ||||||||||||||||||||    
T  51752304 gcttaaaatttggaacaaatctgcacccaaaaatacgtttatgttattcgccgccagcgcaccatcgtgccacgatgcggccccatcgtgccacgatttt 51752205  T
Q  121 tccagtgccttgcc-----aaactaaaacctccatcgtgccacgttgcccagctatcgtgccacgattctgcagaaacctgattttaagttaactctcac 215  Q
    ||||||||||||||     ||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||    
T  51752204 tccagtgccttgcctcaaaaaactgaaacctccatcgtgccacgttgcccaaccatcgtgccacgattctgcagaaacctgattttaagttaactctcac 51752105  T
Q  216 aattctccaccttgacttcaaatcagtgatga 247  Q
    ||||||||||||||||||||||||||||||||    
T  51752104 aattctccaccttgacttcaaatcagtgatga 51752073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 16226105 - 16225886
Alignment:
Q  1 cttaaaatctttaacatatttgctttaaatttgtaccaaatctgcacccaaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatgaga 100  Q
    |||||||||| ||||| || | ||| |||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||    
T  16226105 cttaaaatctgtaacaaatctacttaaaatctgtaacaaatctgcacccaaaa-tatgttttatttttatccgccagcgcaccatcgtgccacgatgcga 16226007  T
Q  101 ccccatcgtgccacgatttttccagtgccttgcc----aaactaaaacctccatcgtgccacgttgcccagctatcgtgccacgattctgcagaaacctg 196  Q
    ||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||| |  ||||||||||||||||||||||||||    
T  16226006 ccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccacgttgcccaaccgtcgtgccacgattctgcagaaacctg 16225907  T
Q  197 attttaagttaactctcacaa 217  Q
    |||||||||||||||| ||||    
T  16225906 attttaagttaactcttacaa 16225886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 27 - 247
Target Start/End: Complemental strand, 20302393 - 20302167
Alignment:
Q  27 aaatttgtaccaaatctgcacccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccag 125  Q
    ||||||| | ||||| ||||||||||||||||||| | || ||  ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  20302393 aaatttggaacaaatatgcacccaaaaatatgtttctgttattcgccgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacaatttttccag 20302294  T
Q  126 tgccttgcc-----aaactaaaacctccatcgtgccacgttgcccagctatcgtgccacgattctgcagaaacctgattttaagttaactctcacaattc 220  Q
    |||||||||     ||||| ||||||||||||||||||||||||  || ||| |||| |||||||||||||| |||||||||||||||||||||||||||    
T  20302293 tgccttgcctcaaaaaactgaaacctccatcgtgccacgttgccttgccatcatgccgcgattctgcagaaatctgattttaagttaactctcacaattc 20302194  T
Q  221 tccaccttgacttcaaatcagtgatga 247  Q
    |||||||||||||||||||||||||||    
T  20302193 tccaccttgacttcaaatcagtgatga 20302167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 22 - 218
Target Start/End: Complemental strand, 13761776 - 13761575
Alignment:
Q  22 gctttaaatttgtaccaaatctgcacccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttt 120  Q
    |||| ||||||| | |||||||||||||||||||| |||| | || ||  |||||||| |||||||||||| ||||| ||||||||||||||||||||||    
T  13761776 gcttaaaatttggaacaaatctgcacccaaaaatacgtttctgttattcgccgccagcacaccatcgtgccgcgatgcgaccccatcgtgccacgatttt 13761677  T
Q  121 tccagtgccttgcc----aaactaaaacctccatcgtgccacgttgcccagctatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 216  Q
    ||||||||||||||    ||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  13761676 tccagtgccttgcctcaaaaactgaaacctccatcatgccacgttgcccagccatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 13761577  T
Q  217 at 218  Q
    ||    
T  13761576 at 13761575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 22 - 216
Target Start/End: Complemental strand, 51749978 - 51749778
Alignment:
Q  22 gctttaaatttgtaccaaatctgcacccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttt 120  Q
    |||| ||||||| | |||||||||||||||||||| |||| | || ||  |||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  51749978 gcttaaaatttggaacaaatctgcacccaaaaatacgtttctgttattcgccgccagcgcactatcgtgccacgatgcgaccccatcgtgccacgatttt 51749879  T
Q  121 tccagtgccttgcc-----aaactaaaacctccatcgtgccacgttgcccagctatcgtgccacgattctgcagaaacctgattttaagttaactctcac 215  Q
    ||||||||||||||     ||||| ||||||||||||| |||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||    
T  51749878 tccagtgccttgcctcaaaaaactgaaacctccatcgtaccacgttgcccaaccatcgtgccacgattctgcagaaacttgattttaagttaactctcac 51749779  T
Q  216 a 216  Q
    |    
T  51749778 a 51749778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 22 - 217
Target Start/End: Original strand, 10400170 - 10400370
Alignment:
Q  22 gctttaaatttgtaccaaatctgcacccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttt 120  Q
    |||| ||||||| | |||||||||||||||||||| |||| | || ||  | ||||||||||||||||||||||||| ||||||||||||||||||| ||    
T  10400170 gcttaaaatttggaacaaatctgcacccaaaaatacgtttatgttatttgctgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatatt 10400269  T
Q  121 tccagtgccttgcc--aaacta-aaacctcca-tcgtgccacgttgcccagctatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 216  Q
    |||||||| |||||  |||||  ||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||    
T  10400270 tccagtgctttgcctcaaacttgaaacctccaatcgtgccacgttgcccagcaatcgtgccacgattccgcagaaacctgattttaagttaactctcaca 10400369  T
Q  217 a 217  Q
    |    
T  10400370 a 10400370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 82 - 216
Target Start/End: Complemental strand, 23783376 - 23783238
Alignment:
Q  82 ccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgccttgcc----aaactaaaacctccatcgtgccacgttgcccagctatcgtgcc 177  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||| ||  |||||||| |||||||    
T  23783376 ccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccgcgaagcccagctgtcgtgcc 23783277  T
Q  178 acgattctgcagaaacctgattttaagttaactctcaca 216  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  23783276 acgattgtgcagaaacctgattttaagttaactctcaca 23783238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 22 - 247
Target Start/End: Complemental strand, 28842432 - 28842202
Alignment:
Q  22 gctttaaatttgtaccaaatctgcacccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttt 120  Q
    |||| ||||||| | ||||| ||||| ||||||||||||| | |||||  | |||||  |||||||||||||||||| || |||||||||||||||||||    
T  28842432 gcttaaaatttggaacaaatttgcactcaaaaatatgtttctgtttttcgctgccaggacaccatcgtgccacgatgcgatcccatcgtgccacgatttt 28842333  T
Q  121 tccagtgccttgcc---aaactaaaacctcca-tcgtgccacgttgcccagctatcgtgccacgattc-tgcagaaacctgattttaagttaactctcac 215  Q
    |||||| |||||||   ||||| ||||||||| ||||||||||| |||  || ||||||||||||||| | ||||  |||||||||||||||||| ||||    
T  28842332 tccagtaccttgcctaaaaactgaaacctccaatcgtgccacgtagccttgccatcgtgccacgattcctacagat-cctgattttaagttaactttcac 28842234  T
Q  216 aattctccaccttgacttcaaatcagtgatga 247  Q
    ||||||||||||||||||||||||||||||||    
T  28842233 aattctccaccttgacttcaaatcagtgatga 28842202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 22 - 196
Target Start/End: Complemental strand, 6823823 - 6823643
Alignment:
Q  22 gctttaaatttgtaccaaatctgcacccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttt 120  Q
    |||| ||||||| | |||||||||||||||||||| |||| | || ||  ||||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  6823823 gcttaaaatttggaacaaatctgcacccaaaaatacgtttatgttattcgccgccagcgcaccatcgtgccacgatgcgaccccatcatgccacgatttt 6823724  T
Q  121 tccagtgccttgcc-----aaactaaaacctccatcgtgccacgttgcccagctatcgtgccacgattctgcagaaacctg 196  Q
    ||||||||||||||     ||||| |||||||||||||||||||||||||| | ||||||||| ||||||||| |||||||    
T  6823723 tccagtgccttgcctcaaaaaactgaaacctccatcgtgccacgttgcccaaccatcgtgccatgattctgcaaaaacctg 6823643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 103 - 217
Target Start/End: Complemental strand, 6822893 - 6822774
Alignment:
Q  103 ccatcgtgccacgatttttccagtgccttgcc-----aaactaaaacctccatcgtgccacgttgcccagctatcgtgccacgattctgcagaaacctga 197  Q
    ||||||||||||||||||||||||||||||||     ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  6822893 ccatcgtgccacgatttttccagtgccttgcctcaaaaaactgaaacctccatcgtgccacgttgcccagccatcgtgccacgattctgcagaaacctga 6822794  T
Q  198 ttttaagttaactctcacaa 217  Q
    ||||||||||||||||||||    
T  6822793 ttttaagttaactctcacaa 6822774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 22 - 216
Target Start/End: Complemental strand, 15823485 - 15823286
Alignment:
Q  22 gctttaaatttgtaccaaatctgcacccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttt 120  Q
    |||| ||||||| | |||||||||| |||||||||||||| | || ||  | || |||||||||||||||||||||| ||||||||||||||||||||||    
T  15823485 gcttaaaatttggaacaaatctgcatccaaaaatatgtttctgttatttgctgctagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttt 15823386  T
Q  121 tccagtgccttgc--caaac-taaaacctcc-atcgtgccacgttgcccagctatcgtgccacgatt-ctgcagaaacctgattttaagttaactctcac 215  Q
    || ||||| ||||  ||||| | |||||||| |||||||||||||||||||| |||||||||||||| |||||| | |||||||||||||||||||||||    
T  15823385 tctagtgctttgcctcaaacttgaaacctccaatcgtgccacgttgcccagccatcgtgccacgattcctgcag-atcctgattttaagttaactctcac 15823287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 22 - 216
Target Start/End: Complemental strand, 28840617 - 28840418
Alignment:
Q  22 gctttaaatttgtaccaaatctgcacccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttt 120  Q
    |||| ||||||| | ||||||||||| ||||||||||||| | |||||  | |||||| |||||||||||||||||| || ||||||||||||| |||||    
T  28840617 gcttaaaatttggaacaaatctgcactcaaaaatatgtttctgtttttcgctgccagcacaccatcgtgccacgatgcgatcccatcgtgccacaatttt 28840518  T
Q  121 tccagtgccttgcc---aaactaaaacctcc-atcgtgccacgttgcccagctatcgtgccacgatt-ctgcagaaacctgattttaagttaactctcac 215  Q
    |||||| |||||||   ||||| |||||||| ||||||||||||||||  || |||||||||||||| |||||| | |||||||||||||||||| ||||    
T  28840517 tccagtaccttgcctaaaaactgaaacctccaatcgtgccacgttgccttgccatcgtgccacgattcctgcag-atcctgattttaagttaactttcac 28840419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 16231539 - 16231444
Alignment:
Q  1 cttaaaatctttaacatatttgctttaaatttgtaccaaatctgcacccaaaaatatgttttatttttatccgccagcgcaccatcgtgccacgat 96  Q
    |||||||||| ||||| || ||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16231539 cttaaaatctgtaacaaatctgcttaaaatctgtaacaaatctgcacccaaaaatatgttttatttttatccgccagcgcaccatcgtgccacgat 16231444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 147 - 247
Target Start/End: Original strand, 14098441 - 14098541
Alignment:
Q  147 ccatcgtgccacgttgcccagctatcgtgccacgatt-ctgcagaaacctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgat 245  Q
    ||||||||||||| ||| |||| |||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14098441 ccatcgtgccacggtgctcagccatcgtgccacgatttctgcagaatc-tgattttaagttaactctcacaattctccaccttgacttcaaatcagtgat 14098539  T
Q  246 ga 247  Q
    ||    
T  14098540 ga 14098541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 103 - 189
Target Start/End: Complemental strand, 16231458 - 16231368
Alignment:
Q  103 ccatcgtgccacgatttttccagtgccttgcc----aaactaaaacctccatcgtgccacgttgcccagctatcgtgccacgattctgcag 189  Q
    ||||||||||||||||||||||||| ||||||    ||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  16231458 ccatcgtgccacgatttttccagtgtcttgcccaaaaaactaaaacctccatcgtgccacgttgcccagccgtcgtgccacgattctgcag 16231368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 185 - 247
Target Start/End: Complemental strand, 16228267 - 16228205
Alignment:
Q  185 tgcagaaacctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatga 247  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  16228267 tgcagaaacctgattttaagttaactcttacaattctccaccttgacttcaaatcagtgatga 16228205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 115 - 216
Target Start/End: Complemental strand, 20291386 - 20291280
Alignment:
Q  115 gatttttccagtgccttgcc-----aaactaaaacctccatcgtgccacgttgcccagctatcgtgccacgattctgcagaaacctgattttaagttaac 209  Q
    ||||||||||||||| ||||     ||||| ||||||||| ||||||||||||||  || ||||||||||||||||||||||| ||||||||||||||||    
T  20291386 gatttttccagtgccatgcctcaaaaaactgaaacctccaccgtgccacgttgccttgccatcgtgccacgattctgcagaaatctgattttaagttaac 20291287  T
Q  210 tctcaca 216  Q
    |||||||    
T  20291286 tctcaca 20291280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 27 - 97
Target Start/End: Complemental strand, 23783452 - 23783382
Alignment:
Q  27 aaatttgtaccaaatctgcacccaaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatg 97  Q
    |||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23783452 aaatctgtaacaaatctgctcccaaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatg 23783382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 170 - 247
Target Start/End: Original strand, 2393766 - 2393843
Alignment:
Q  170 atcgtgccacgattctgcagaaacctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatga 247  Q
    |||||| ||||||||| ||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2393766 atcgtggcacgattctccagatttctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatga 2393843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 194 - 247
Target Start/End: Complemental strand, 9526139 - 9526086
Alignment:
Q  194 ctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatga 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9526139 ctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatga 9526086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 71 - 218
Target Start/End: Original strand, 3580010 - 3580161
Alignment:
Q  71 ccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgccttgcc---aaactaaaacctcc-atcgtgccacgttgccca 166  Q
    |||||||||||||||||||||||| ||  | |||| ||| |||||||||||||| || ||||||    |||| |||| ||| || ||| ||||||||||     
T  3580010 ccgccagcgcaccatcgtgccacgttgcaatcccaccgtaccacgatttttccaatgacttgcctcataactgaaacatccaattgtgtcacgttgccct 3580109  T
Q  167 gctatcgtgccacgatt-ctgcagaaacctgattttaagttaactctcacaat 218  Q
    || |||||||||||||| |||||  ||||||||||||||||||||| ||||||    
T  3580110 gcaatcgtgccacgattcctgca-taacctgattttaagttaactcccacaat 3580161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 217
Target Start/End: Original strand, 30790736 - 30790936
Alignment:
Q  22 gctttaaatttgtaccaaatctgcacccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttt 120  Q
    |||| ||||||| | |||||||||||  ||||||| |||| | |||||  || ||||||||||||||||||||  || || |||||||||||||| ||||    
T  30790736 gcttaaaatttggaacaaatctgcactgaaaaatacgtttatgtttttcccctccagcgcaccatcgtgccacattgcgatcccatcgtgccacgttttt 30790835  T
Q  121 tccagtgccttgc--ca-aactaaaacctcc-atcgtgccacgttgcccagctatcgtgccacga-ttctgcagaaacctgattttaagttaactctcac 215  Q
    ||||||| |||||  || |||| |||| ||| |||||||||| |||| | || | |||| ||||| |||| ||| |||||| |||||||||| |||||||    
T  30790836 tccagtgacttgcttcataactgaaacatccaatcgtgccacattgctctgcaaacgtgtcacgatttctccag-aacctggttttaagttagctctcac 30790934  T
Q  216 aa 217  Q
    ||    
T  30790935 aa 30790936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 135 - 214
Target Start/End: Original strand, 38925916 - 38925996
Alignment:
Q  135 aaactaaaacctcca-tcgtgccacgttgcccagctatcgtgccacga-ttctgcagaaacctgattttaagttaactctca 214  Q
    ||||| ||||||||| ||||||||||||||||||| ||||| |||||| |||||| | ||||||||||||||||||||||||    
T  38925916 aaactgaaacctccaatcgtgccacgttgcccagccatcgtaccacgatttctgc-ggaacctgattttaagttaactctca 38925996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 183
Target Start/End: Complemental strand, 13215020 - 13214854
Alignment:
Q  22 gctttaaatttgtaccaaatctgcacccaaaaatatgttttatttttatcc-gccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttt 120  Q
    |||| ||||||| | |||||||||||||||||||| |||||  || | | | |||| | ||||||||||||||| ||  | |||||| ||||||||        
T  13215020 gcttaaaatttggaacaaatctgcacccaaaaatacgtttttgttatttgctgccaacacaccatcgtgccacgttgcaatcccatcatgccacgaaaaa 13214921  T
Q  121 tccagtgccttgcc---aaactaaaacctcca-tcgtgccacgttgcccagctatcgtgccacgatt 183  Q
    ||||||| ||||||   ||||| ||||||||| ||||||||||||||||| | ||||||||||||||    
T  13214920 tccagtgacttgcctcaaaactgaaacctccaatcgtgccacgttgcccaaccatcgtgccacgatt 13214854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 195 - 247
Target Start/End: Original strand, 28201926 - 28201978
Alignment:
Q  195 tgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatga 247  Q
    |||||||||||||||||||||||||||||||||||| || ||||||| |||||    
T  28201926 tgattttaagttaactctcacaattctccaccttgattttaaatcagcgatga 28201978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 113
Target Start/End: Original strand, 28207408 - 28207500
Alignment:
Q  22 gctttaaatttgtaccaaatctgcacccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgcca 113  Q
    |||| ||||||| | |||||||||||||||||| | |||| | || ||  |||||||||||||||||||||||| || |||||||||||||||    
T  28207408 gcttaaaatttggaacaaatctgcacccaaaaaaacgtttatgttattcgccgccagcgcaccatcgtgccacgttgtgaccccatcgtgcca 28207500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 76 - 216
Target Start/End: Complemental strand, 39462402 - 39462258
Alignment:
Q  76 agcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgccttgcc---aaactaaaacctcca-tcgtgccacgttgcccagctat 171  Q
    ||||||||||||||||||  ||  | |||||||||||||||    |||| || ||||||   ||||| ||||||| | ||||||||||||||||| | ||    
T  39462402 agcgcaccatcgtgccacattgcaatcccatcgtgccacgaaaaatccactgacttgcctcaaaactgaaacctctaatcgtgccacgttgcccaaccat 39462303  T
Q  172 cgtgccacgatt-ctgcagaaacctgattttaagttaactctcaca 216  Q
     ||| ||||||| |||||||| ||||||||||||||||||||||||    
T  39462302 tgtgtcacgatttctgcagaa-cctgattttaagttaactctcaca 39462258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 135 - 216
Target Start/End: Complemental strand, 47451487 - 47451405
Alignment:
Q  135 aaactaaaacctcca-tcgtgccacgttgcccagctatcgtgccacga-ttctgcagaaacctgattttaagttaactctcaca 216  Q
    ||||| ||||||||| ||||||||| ||||||||| |||||||||||| ||||||| ||| ||||||| |||||||||||||||    
T  47451487 aaactgaaacctccaatcgtgccacattgcccagccatcgtgccacgatttctgca-aaatctgatttgaagttaactctcaca 47451405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 127
Target Start/End: Original strand, 13449919 - 13449996
Alignment:
Q  50 aaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtg 127  Q
    ||||||| ||||||||||||||  ||| |||||||||||| ||||||  || || |||||| ||||||||||||||||    
T  13449919 aaaaatacgttttatttttatctaccatcgcaccatcgtggcacgattcgatccaatcgtggcacgatttttccagtg 13449996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 103 - 216
Target Start/End: Complemental strand, 49687418 - 49687301
Alignment:
Q  103 ccatcgtgccacgatttttccagtgccttgcc---aaactaaaacctcca-tcgtgccacgttgcccagctatcgtgccacgatt-ctgcagaaacctga 197  Q
    ||||||||||||||    ||||||| ||||||   ||||| ||||||||| | ||||||||||||||||| ||| |||||||||| || || || |||||    
T  49687418 ccatcgtgccacgaaaaatccagtgacttgcctcaaaactgaaacctccaattgtgccacgttgcccagccatcatgccacgatttctacataa-cctga 49687320  T
Q  198 ttttaagttaactctcaca 216  Q
    |||||||||||||||||||    
T  49687319 ttttaagttaactctcaca 49687301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 218
Target Start/End: Complemental strand, 2617326 - 2617278
Alignment:
Q  170 atcgtgccacgattctgcagaaacctgattttaagttaactctcacaat 218  Q
    |||||| ||||||||| |||||  |||||||||||||||||||||||||    
T  2617326 atcgtggcacgattctccagaattctgattttaagttaactctcacaat 2617278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 175; Significance: 2e-94; HSPs: 30)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 32 - 247
Target Start/End: Complemental strand, 33311142 - 33310923
Alignment:
Q  32 tgtaccaaatctgcacccaaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgcctt 131  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  33311142 tgtaacaaatctgctcccaaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgcctt 33311043  T
Q  132 gcc----aaactaaaacctccatcgtgccacgttgcccagctatcgtgccacgattctgcagaaacctgattttaagttaactctcacaattctccacct 227  Q
    |||    |||||||||||||||||||||||||  |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33311042 gcccaaaaaactaaaacctccatcgtgccacgaagcccagccgtcgtgccacgattctgcagaaacctgattttaagttaactctcacaattctccacct 33310943  T
Q  228 tgacttcaaatcagtgatga 247  Q
    ||||||||||||||||||||    
T  33310942 tgacttcaaatcagtgatga 33310923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 32 - 247
Target Start/End: Original strand, 26066423 - 26066642
Alignment:
Q  32 tgtaccaaatctgcacccaaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgcctt 131  Q
    |||| ||||||||| |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  26066423 tgtaacaaatctgctcccaaaaatacgttttatttttatccgccagcgcaccattgtgccacgatgagaccccatcgtgccacgatttttccagtgcctt 26066522  T
Q  132 gccaaa----ctaaaacctccatcgtgccacgttgcccagctatcgtgccacgattctgcagaaacctgattttaagttaactctcacaattctccacct 227  Q
    ||| ||    |||||||||||||||||||||||||||  ||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  26066523 gcccaaataactaaaacctccatcgtgccacgttgccttgccgtcgtgccacgattctacagaaacctgattttaagttaactctcacaattctccacct 26066622  T
Q  228 tgacttcaaatcagtgatga 247  Q
    ||||||||||||||||||||    
T  26066623 tgacttcaaatcagtgatga 26066642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 32 - 219
Target Start/End: Complemental strand, 33308873 - 33308682
Alignment:
Q  32 tgtaccaaatctgcacccaaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgcctt 131  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  33308873 tgtaacaaatctgctcccaaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgcctt 33308774  T
Q  132 gcc----aaactaaaacctccatcgtgccacgttgcccagctatcgtgccacgattctgcagaaacctgattttaagttaactctcacaatt 219  Q
    |||    |||||||||||||||||||||||||  |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  33308773 gcccaaaaaactaaaacctccatcgtgccacgaagcccagccgtcgtgccacgattctgcagaaacctgattttaagttaactctcacaatt 33308682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 37 - 216
Target Start/End: Original strand, 26068699 - 26068882
Alignment:
Q  37 caaatctgcacccaaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgccttgcc-- 134  Q
    ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  26068699 caaatctgctcccaaaaatacgttttatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgccttgccca 26068798  T
Q  135 --aaactaaaacctccatcgtgccacgttgcccagctatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 216  Q
      ||||||||||||||||| ||||||||||||  ||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  26068799 aaaaactaaaacctccatcatgccacgttgccttgccgtcgtgccacgattctgcagaaacctgattttaagttaactctcaca 26068882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 32 - 216
Target Start/End: Original strand, 29755091 - 29755279
Alignment:
Q  32 tgtaccaaatctgcacccaaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgcctt 131  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  29755091 tgtaacaaatctgctcccaaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgcctt 29755190  T
Q  132 gcc----aaactaaaacctccatcgtgccacgttgcccagctatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 216  Q
    |||    |||||||||||||||||||||| ||  |||||||  ||||||||||||| ||||||||||||||||||||||||||||||||    
T  29755191 gcccaaaaaactaaaacctccatcgtgccgcgaagcccagccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcaca 29755279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 22 - 216
Target Start/End: Original strand, 14507515 - 14507716
Alignment:
Q  22 gctttaaatttgtaccaaatctgcacccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttt 120  Q
    |||| ||||||| | ||||||| ||| ||||||||||||| | |||||  | | ||||||||||||||||||||||| |||||||||||||||| |||||    
T  14507515 gcttaaaatttggaacaaatctacactcaaaaatatgtttctgtttttcgctggcagcgcaccatcgtgccacgatgcgaccccatcgtgccaccatttt 14507614  T
Q  121 tccagtgccttgcc------aaactaaaacctccatcgtgccacgttgcccagctatcgtgccacgattctgcagaaacctgattttaagttaactctca 214  Q
    ||||||||||||        ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  14507615 tccagtgccttgtatcaaaaaaactgaaacctccatcgtgccacgttgcccagccatcgtgccacgattctgcagaaatctgattttaagttaactctca 14507714  T
Q  215 ca 216  Q
    ||    
T  14507715 ca 14507716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 27 - 217
Target Start/End: Original strand, 11983374 - 11983567
Alignment:
Q  27 aaatttgtaccaaatctgcacccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccag 125  Q
    ||||||| | ||||||||||| ||||||||||||| | |||||  | ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  11983374 aaatttgaaacaaatctgcactcaaaaatatgtttctgtttttcgctgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccag 11983473  T
Q  126 tgccttgc-ca-aactaaaacctccatcgtgccacgttgcccagctatcgtgccacgattctgcagaaacctgattttaagttaactctcacaa 217  Q
    ||| |  | || |||| ||||||||||||| ||| |||||||| | ||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  11983474 tgcttacctcacaactgaaacctccatcgtaccatgttgcccaaccatcgtaccacgattctgcagaaacctgattttaagttaactcttacaa 11983567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 75 - 216
Target Start/End: Complemental strand, 8995400 - 8995255
Alignment:
Q  75 cagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgccttgcc---aaactaaaacctcc-atcgtgccacgttgcccagcta 170  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||   ||||| |||||||| |||||||||||||||||||| |    
T  8995400 cagcgcaccatcgtgccacgatgtgaccccatcgtgccacgatttttccagtgccttgcccaaaaactgaaacctccaatcgtgccacgttgcccagcca 8995301  T
Q  171 tcgtgccacgatt-ctgcagaaacctgattttaagttaactctcaca 216  Q
    ||||||||||||| || ||| | ||||||||||||||||||||||||    
T  8995300 tcgtgccacgattcctacag-atcctgattttaagttaactctcaca 8995255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 75 - 216
Target Start/End: Complemental strand, 9019847 - 9019702
Alignment:
Q  75 cagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgccttgcc---aaactaaaacctcc-atcgtgccacgttgcccagcta 170  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||   ||||| |||||||| |||||||||||||||||||| |    
T  9019847 cagcgcaccatcgtgccacgatgtgaccccatcgtgccacgatttttccagtgccttgcccaaaaactgaaacctccaatcgtgccacgttgcccagcca 9019748  T
Q  171 tcgtgccacgatt-ctgcagaaacctgattttaagttaactctcaca 216  Q
    ||||||||||||| || ||| | ||||||||||||||||||||||||    
T  9019747 tcgtgccacgattcctacag-atcctgattttaagttaactctcaca 9019702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 27 - 217
Target Start/End: Original strand, 19227753 - 19227949
Alignment:
Q  27 aaatttgtaccaaatctgcacccaaaaa-tatgttt-tatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttcca 124  Q
    ||||||| | |||||||||||||||||| ||||||| | || ||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  19227753 aaatttggaacaaatctgcacccaaaaaatatgtttctgttattcgccgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttcca 19227852  T
Q  125 gtgccttgcc----aaactaaaacctccatcgtgccacgttgcccagctatcgtgccacgatt-ctgcagaaacctgattttaagttaactctcacaa 217  Q
    ||||||||||    ||| | ||||||||||| |||||||||||||| | |||||||||||||| |||||| | | | |||||||||||||||||||||    
T  19227853 gtgccttgcctcaaaaattgaaacctccatcatgccacgttgcccaaccatcgtgccacgattcctgcag-atcttaattttaagttaactctcacaa 19227949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 22 - 216
Target Start/End: Original strand, 15530462 - 15530661
Alignment:
Q  22 gctttaaatttgtaccaaatctgcacccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttt 120  Q
    |||| ||||||| | |||| |||||||||||||||||||| |||  ||  | |||||| |||||||||||||||||| | ||||||||| |||||| |||    
T  15530462 gcttaaaatttggaacaaacctgcacccaaaaatatgtttctataattcactgccagcacaccatcgtgccacgatgcggccccatcgtaccacgaattt 15530561  T
Q  121 tccagtgccttgc--caaac-taaaacctcc-atcgtgccacgttgcccagctatcgtgccacgatt-ctgcagaaacctgattttaagttaactctcac 215  Q
    || ||||| ||||  ||||| | |||||||| || |||||||||| |||||| |||||||||||||| |||||| | |||||||||||||||||||||||    
T  15530562 tcgagtgctttgcctcaaacttgaaacctccaattgtgccacgttacccagccatcgtgccacgattcctgcag-atcctgattttaagttaactctcac 15530660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 4816586 - 4816749
Alignment:
Q  1 cttaaaatctttaacatatttgctttaaatt-tgtaccaaatctgcacccaaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatgag 99  Q
    |||||||||| ||||| || ||||| ||| | |||| |||||||||||| ||||||||||||   ||||  |  ||||| |||||||||||||||||| |    
T  4816586 cttaaaatctgtaacaaatctgcttaaaaatctgtaacaaatctgcaccaaaaaatatgtttctgtttttgctaccagcacaccatcgtgccacgatgcg 4816685  T
Q  100 accccatcgtgccacgatttttccagtgccttgcc---aaactaaaacctcc-atcgtgccacg 159  Q
    ||||||||||||||||||||||||||| |||||||   ||||| |||||||| |||||||||||    
T  4816686 accccatcgtgccacgatttttccagtaccttgcctcaaaactgaaacctccaatcgtgccacg 4816749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 194 - 247
Target Start/End: Complemental strand, 13883150 - 13883097
Alignment:
Q  194 ctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatga 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13883150 ctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatga 13883097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 194 - 247
Target Start/End: Original strand, 31249221 - 31249274
Alignment:
Q  194 ctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatga 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31249221 ctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatga 31249274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 194 - 247
Target Start/End: Original strand, 35201833 - 35201886
Alignment:
Q  194 ctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatga 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35201833 ctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatga 35201886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 194 - 247
Target Start/End: Original strand, 35209068 - 35209121
Alignment:
Q  194 ctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatga 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35209068 ctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatga 35209121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 193 - 247
Target Start/End: Original strand, 30729323 - 30729377
Alignment:
Q  193 cctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatga 247  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  30729323 cctgatattaagttaactctcacaattctccaccttgacttcaaatcagtgatga 30729377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 193 - 247
Target Start/End: Original strand, 15533197 - 15533251
Alignment:
Q  193 cctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatga 247  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  15533197 cctgattttaagttaactctcacaattctccaccatgacttcaaataagtgatga 15533251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 135 - 216
Target Start/End: Original strand, 1072313 - 1072395
Alignment:
Q  135 aaactaaaacctcca-tcgtgccacgttgcccagctatcgtgccacgatt-ctgcagaaacctgattttaagttaactctcaca 216  Q
    ||||| ||||||||| ||||||||||||||||| | ||||| |||||||| |||||||| ||||||||||||||||||||||||    
T  1072313 aaacttaaacctccaatcgtgccacgttgcccaaccatcgtaccacgatttctgcagaa-cctgattttaagttaactctcaca 1072395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 22 - 134
Target Start/End: Original strand, 30729168 - 30729281
Alignment:
Q  22 gctttaaatttgtaccaaatctgcacccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttt 120  Q
    |||| ||||||| | |||||||||||||||||||| |||| | || ||  | |||||||||| ||||||||||| || |||||||||||| |||||  ||    
T  30729168 gcttaaaatttggaacaaatctgcacccaaaaatacgtttctgttattcgctgccagcgcactatcgtgccacgttgtgaccccatcgtggcacgaaatt 30729267  T
Q  121 tccagtgccttgcc 134  Q
    ||||||| ||||||    
T  30729268 tccagtgacttgcc 30729281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 207 - 247
Target Start/End: Original strand, 22344783 - 22344823
Alignment:
Q  207 aactctcacaattctccaccttgacttcaaatcagtgatga 247  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  22344783 aactctcacaattctccaccttgacttcaaatcagtgatga 22344823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 170 - 216
Target Start/End: Original strand, 4816739 - 4816786
Alignment:
Q  170 atcgtgccacgattctgcagaaa-cctgattttaagttaactctcaca 216  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  4816739 atcgtgccacgattctgcagaaaacctgattttaagttaactctcaca 4816786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 127
Target Start/End: Complemental strand, 26084895 - 26084818
Alignment:
Q  50 aaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtg 127  Q
    ||||||| ||||||||||||||  | | |||||||||||||||||||| ||  | |||||| ||||||||||||||||    
T  26084895 aaaaatacgttttatttttatcttcaatcgcaccatcgtgccacgatgcgattcaatcgtggcacgatttttccagtg 26084818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 216
Target Start/End: Complemental strand, 32279910 - 32279794
Alignment:
Q  103 ccatcgtgccacgatttttccagtgccttgcc---aaactaaaacctcc-atcgtgccacgttgcccagctatcgtgccacgatt-ctgcagaaacctga 197  Q
    |||||||||||||| |||||||| | ||||||    |||| |||| ||| |||||||||||||||||| | |||||| |||| || ||||||||  ||||    
T  32279910 ccatcgtgccacgacttttccagcgacttgcctcagaactgaaacatccaatcgtgccacgttgcccaacaatcgtgtcacgtttcctgcagaa--ctga 32279813  T
Q  198 ttttaagttaactctcaca 216  Q
    |||||||||||||||||||    
T  32279812 ttttaagttaactctcaca 32279794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 218
Target Start/End: Original strand, 1230721 - 1230769
Alignment:
Q  170 atcgtgccacgattctgcagaaacctgattttaagttaactctcacaat 218  Q
    |||||| ||||||||| |||||  |||||||||||||||||||||||||    
T  1230721 atcgtggcacgattctccagaattctgattttaagttaactctcacaat 1230769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 217
Target Start/End: Original strand, 17695336 - 17695383
Alignment:
Q  170 atcgtgccacgattctgcagaaacctgattttaagttaactctcacaa 217  Q
    |||||| ||||||||| |||||  ||||||||||||||||||||||||    
T  17695336 atcgtggcacgattctccagaattctgattttaagttaactctcacaa 17695383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 217
Target Start/End: Complemental strand, 26064802 - 26064755
Alignment:
Q  170 atcgtgccacgattctgcagaaacctgattttaagttaactctcacaa 217  Q
    |||||| ||||||||| |||||  ||||||||||||||||||||||||    
T  26064802 atcgtggcacgattctccagaattctgattttaagttaactctcacaa 26064755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 217
Target Start/End: Complemental strand, 26084771 - 26084724
Alignment:
Q  170 atcgtgccacgattctgcagaaacctgattttaagttaactctcacaa 217  Q
    |||||| ||||||||| |||||  ||||||||||||||||||||||||    
T  26084771 atcgtggcacgattctccagaattctgattttaagttaactctcacaa 26084724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 216
Target Start/End: Original strand, 28241814 - 28241860
Alignment:
Q  170 atcgtgccacgattctgcagaaacctgattttaagttaactctcaca 216  Q
    |||||| ||||||||| |||||  |||||||||||||||||||||||    
T  28241814 atcgtggcacgattcttcagaattctgattttaagttaactctcaca 28241860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 218
Target Start/End: Complemental strand, 33215545 - 33215497
Alignment:
Q  170 atcgtgccacgattctgcagaaacctgattttaagttaactctcacaat 218  Q
    |||||| ||||||||| ||||   |||||||||||||||||||||||||    
T  33215545 atcgtggcacgattctccagatttctgattttaagttaactctcacaat 33215497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 32 - 247
Target Start/End: Complemental strand, 24378 - 24159
Alignment:
Q  32 tgtaccaaatctgcacccaaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgcctt 131  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  24378 tgtaacaaatctgctcccaaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgcctt 24279  T
Q  132 gcc----aaactaaaacctccatcgtgccacgttgcccagctatcgtgccacgattctgcagaaacctgattttaagttaactctcacaattctccacct 227  Q
    |||    |||||||||||||||||||||| ||  |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  24278 gcccaaaaaactaaaacctccatcgtgccgcgaagcccagctgtcgtgccacgattgtgcagaaacctgattttaagttaactctcacaattctccacct 24179  T
Q  228 tgacttcaaatcagtgatga 247  Q
    ||||||||||||||||||||    
T  24178 tgacttcaaatcagtgatga 24159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 32 - 217
Target Start/End: Complemental strand, 22103 - 21914
Alignment:
Q  32 tgtaccaaatctgcacccaaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgcctt 131  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  22103 tgtaacaaatctgctcccaaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgcctt 22004  T
Q  132 gcc----aaactaaaacctccatcgtgccacgttgcccagctatcgtgccacgattctgcagaaacctgattttaagttaactctcacaa 217  Q
    |||    |||||||||||||||||||||| ||  |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||    
T  22003 gcccaaaaaactaaaacctccatcgtgccgcgaagcccagctgtcgtgccacgattgtgcagaaacctgattttaagttaactctcacaa 21914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 59)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 6063787 - 6064037
Alignment:
Q  1 cttaaaatctttaacatatttgctttaaatttgtaccaaatctgcacccaaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatgaga 100  Q
    |||||||||| ||||| || ||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| ||    
T  6063787 cttaaaatctgtaacaaatctgcttaaaatctgtaacaaatctgcacccaaaaatatgttttatttttatccgccagtccaccatcgtgccacgatgcga 6063886  T
Q  101 ccccatcgtgccacgatttttccagtgccttgcc----aaactaaaacctccatcgtgccacgttgcccagctatcgtgccacgattctgcagaaacctg 196  Q
    ||||||||||||||||||||| ||||||||||||    |||||||||||||||| |||||||||||||  || ||||||||||||||||||| |||||||    
T  6063887 ccccatcgtgccacgattttttcagtgccttgcccaaaaaactaaaacctccattgtgccacgttgccttgccatcgtgccacgattctgcataaacctg 6063986  T
Q  197 attttaagttaactctcacaattctccaccttgacttcaaatcagtgatga 247  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  6063987 attttaagttaattctcacaattctccaccttgacttcaaatcagtgatga 6064037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 32 - 216
Target Start/End: Complemental strand, 50493864 - 50493676
Alignment:
Q  32 tgtaccaaatctgcacccaaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgcctt 131  Q
    |||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  50493864 tgtaacaaatctgctcccaaaaatacgttttatttttatccgccagcgcaccatcgtgccacgatgagactccatcgtgccacgatttttccagtgcctt 50493765  T
Q  132 gcc----aaactaaaacctccatcgtgccacgttgcccagctatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 216  Q
    |||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50493764 gcccaaaaaactaaaacctccatcgtgccacgttgcccagctatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 50493676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 53896535 - 53896754
Alignment:
Q  1 cttaaaatctttaacatatttgctttaaatttgtaccaaatctgcacccaaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatgaga 100  Q
    |||||||||| ||||| || ||||| |||| |||| ||||||||| |||||||||| ||||||||||||||||| || ||||||||||||||||||||||    
T  53896535 cttaaaatctgtaacaaatctgcttaaaatctgtaacaaatctgctcccaaaaatacgttttatttttatccgcaagagcaccatcgtgccacgatgaga 53896634  T
Q  101 ccccatcgtgccacgatttttccagtgccttgcc----aaactaaaacctccatcgtgccacgttgcccagctatcgtgccacgattctgcagaaacctg 196  Q
    |||||||||||||||||||||||||| |||||||    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  53896635 ccccatcgtgccacgatttttccagtaccttgcccaaaaaactaaaacctccatcgtgccacgttgcccagcaatcgtgccacgattctgcagaaacctg 53896734  T
Q  197 attttaagttaactctcaca 216  Q
    ||||||||||||||||||||    
T  53896735 attttaagttaactctcaca 53896754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 5899678 - 5899429
Alignment:
Q  1 cttaaaatctttaacatatttgctttaaatttgtaccaaatctgcacccaaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatgaga 100  Q
    |||||||||| ||||| || ||||| |||| |||| |||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||    
T  5899678 cttaaaatctgtaacaaatctgcttaaaatctgtaacaaatctgtacccaaaaatacgttttatttttatctgccagcgcaccatcgtgccacgatgcga 5899579  T
Q  101 ccccatcgtgccacgatttttccagtgccttgcc----aaactaaaacctccatcgtgccacgttgcccagctatcgtgccacgattctgcagaaacctg 196  Q
    ||||||||||||| ||||||||||||||||||||    |||||||||| ||||||||||||||||||||  | ||||||||| |||| ||||||||||||    
T  5899578 ccccatcgtgccatgatttttccagtgccttgcctaaaaaactaaaacatccatcgtgccacgttgcccttcaatcgtgccatgattatgcagaaacctg 5899479  T
Q  197 atttta--agttaactctcacaattctccaccttgacttcaaatcagtga 244  Q
    ||| ||  ||||||||||||||||||||||||||||||||||||||||||    
T  5899478 attataagagttaactctcacaattctccaccttgacttcaaatcagtga 5899429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 32 - 217
Target Start/End: Complemental strand, 38210255 - 38210066
Alignment:
Q  32 tgtaccaaatctgcacccaaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgcctt 131  Q
    |||| ||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38210255 tgtaacaaatctgctcccaaaaatacgttttatttttatccgccagcgcactatcgtgccacgatgagaccccatcgtgccacgatttttccagtgcctt 38210156  T
Q  132 gcc----aaactaaaacctccatcgtgccacgttgcccagctatcgtgccacgattctgcagaaacctgattttaagttaactctcacaa 217  Q
    |||    ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  38210155 gcccaaaaaactaaaacctccatcgtgccacgttgcccagccgtcgtgccacgattctgcagaaacctgattttaagttaactctcacaa 38210066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 22 - 218
Target Start/End: Original strand, 18099508 - 18099709
Alignment:
Q  22 gctttaaatttgtaccaaatctgcacccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttt 120  Q
    |||| ||||||| | |||||||||||||||||||| |||| |||| ||  ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  18099508 gcttaaaatttggaacaaatctgcacccaaaaatacgtttctattgttcgccgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttt 18099607  T
Q  121 tccagtgccttgcc---aaactaaaacctcca-tcgtgccacgttgcccagctatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 216  Q
    ||||||| ||||||   ||||| ||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||    
T  18099608 tccagtgtcttgcctcaaaactgaaacctccaatcgtgccacgttgcccagccatcgtgccacgattttgcagaaacctgattttaagttaactctcaca 18099707  T
Q  217 at 218  Q
    ||    
T  18099708 at 18099709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 5886203 - 5885981
Alignment:
Q  1 cttaaaatctttaacatatttgctttaaatttgtaccaaatctgcacccaaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatgaga 100  Q
    |||||||||| ||||| || ||||| |||| |||| ||||| |||||||||||||| |||||||||||||| |||||||||||||||| |||||||| ||    
T  5886203 cttaaaatctgtaacaaatctgcttaaaatctgtaacaaatttgcacccaaaaatacgttttatttttatctgccagcgcaccatcgtaccacgatgcga 5886104  T
Q  101 ccccatcgtgccacgatttttccagtgccttgcc----aaactaaaacctccatcgtgccacg-ttgcccagctatcgtgccacgattctgcagaaacct 195  Q
    |||||||||||||||||||||||||| |||||||    |||||||||| |||||||||||||| |||| |  | ||||||||||||||||| | ||||||    
T  5886103 ccccatcgtgccacgatttttccagtaccttgcctaaaaaactaaaacatccatcgtgccacgtttgcgcttcaatcgtgccacgattctgtaaaaacct 5886004  T
Q  196 gattttaagttaactctcacaat 218  Q
     ||||||||||||||||||||||    
T  5886003 aattttaagttaactctcacaat 5885981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 22 - 218
Target Start/End: Original strand, 22114643 - 22114844
Alignment:
Q  22 gctttaaatttgtaccaaatctgcacccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttt 120  Q
    |||| ||||||| | |||||||||||||||||||| |||| | || ||  |||||| |||||||||||||||||||| |||||||||||||||| |||||    
T  22114643 gcttaaaatttggaacaaatctgcacccaaaaatacgtttctgttattcgccgccatcgcaccatcgtgccacgatgcgaccccatcgtgccacaatttt 22114742  T
Q  121 tccagtgccttgcc----aaactaaaacctccatcgtgccacgttgcccagctatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 216  Q
    ||||||||||||||    ||||| |||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||||||    
T  22114743 tccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgcccaaccatcgtgccacgattctacagaaacctgattttaagttaactctcaca 22114842  T
Q  217 at 218  Q
    ||    
T  22114843 at 22114844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 25388816 - 25388654
Alignment:
Q  1 cttaaaatctttaacatatttgctttaaatttgtaccaaatctgcacccaaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatgaga 100  Q
    |||||||||| ||||| || ||||| |||| |||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  25388816 cttaaaatctgtaacaaatctgcttaaaatctgtaacaaatctgctcccaaaaatatgttttatttttatctgccagcgcaccatcgtgccacgatgaga 25388717  T
Q  101 ccccatcgtgccacgatttttccagtgccttgcc----aaactaaaacctccatcgtgccacg 159  Q
    ||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||    
T  25388716 ccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccacg 25388654  T

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Target: chr3; HSP #10
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 27 - 215
Target Start/End: Complemental strand, 5191567 - 5191374
Alignment:
Q  27 aaatttgtaccaaatctgcacccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccag 125  Q
    ||||||| | ||||||||||| ||||||||||||| | |||||  | |||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  5191567 aaatttggaacaaatctgcactcaaaaatatgtttctgtttttcgctgccagcgcaccatcgtgccacgatgagatcccatcgtgccacgatttttccag 5191468  T
Q  126 tgccttgcc---aaactaaaacctcca-tcgtgccacgttgcccagctatcgtgccacgattctgcagaaacctgattttaagttaactctcac 215  Q
    | |||||||   ||||| ||||||||| |||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  5191467 taccttgcctcaaaactgaaacctccaatcgtgccacgatgcccagcaatcgtgccacgattctgcagaaatctgattttaagttaactctcac 5191374  T

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Target: chr3; HSP #11
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 20 - 247
Target Start/End: Original strand, 10956363 - 10956594
Alignment:
Q  20 ttgctttaaatttgtaccaaatctgcacccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatt 118  Q
    |||||| ||||||| | |||||||||||| ||||||| |||| | || ||  | ||||||||||||||||||||||||| ||||||||||||||||||||    
T  10956363 ttgcttaaaatttggaacaaatctgcacctaaaaatacgtttatgttattcgctgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatt 10956462  T
Q  119 tttccagtgccttgcc---aaactaaaacctcc-atcgtgccacgttgcccagctatcgtgccacgatt-ctgcagaaacctgattttaagttaactctc 213  Q
    ||||||||||||||||   ||||| |||||||| ||||||||| | || ||||| || ||||||||||| |||||| | |||||||||||||||||||||    
T  10956463 tttccagtgccttgccccaaaactgaaacctccaatcgtgccatgatgtccagccat-gtgccacgattcctgcag-atcctgattttaagttaactctc 10956560  T
Q  214 acaattctccaccttgacttcaaatcagtgatga 247  Q
    |||||| |||||||||||||||||||||||||||    
T  10956561 acaattatccaccttgacttcaaatcagtgatga 10956594  T

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Target: chr3; HSP #12
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 89 - 247
Target Start/End: Original strand, 18097291 - 18097453
Alignment:
Q  89 gccacgatgagaccccatcgtgccacgatttttccagtgccttgcc---aaactaaaacctcca-tcgtgccacgttgcccagctatcgtgccacgattc 184  Q
    ||||| ||| |||||||||||||||||||||||||  |||||||||   ||||| ||||||||| ||||||||||||||||||| ||||||||||||||     
T  18097291 gccactatgcgaccccatcgtgccacgatttttcctatgccttgcctcaaaactgaaacctccaatcgtgccacgttgcccagccatcgtgccacgattt 18097390  T
Q  185 tgcagaaacctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatga 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  18097391 tgcagaaacctgattttaagttaactctcacaattctccaccttgactttaaatcagggatga 18097453  T

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Target: chr3; HSP #13
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 135 - 247
Target Start/End: Original strand, 7606882 - 7606994
Alignment:
Q  135 aaactaaaacctccatcgtgccacgttgcccagctatcgtgccacgattctgcagaaacctgattttaagttaactctcacaattctccaccttgacttc 234  Q
    ||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7606882 aaactgaaacctccatcgtgccacgttgcccagccatcgtgtcacgattctgcagaaacctgattttaagttaactctcacaattctccaccttgacttc 7606981  T
Q  235 aaatcagtgatga 247  Q
    |||||||||||||    
T  7606982 aaatcagtgatga 7606994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 103 - 216
Target Start/End: Complemental strand, 35777280 - 35777163
Alignment:
Q  103 ccatcgtgccacgatttttccagtgccttgcc----aaactaaaacctccatcgtgccacgttgcccagctatcgtgccacgattctgcagaaacctgat 198  Q
    ||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||    
T  35777280 ccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccacgttgcccagctgtcgtgccacgattctgcagaaatctaat 35777181  T
Q  199 tttaagttaactctcaca 216  Q
    ||||||||||||||||||    
T  35777180 tttaagttaactctcaca 35777163  T

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Target: chr3; HSP #15
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 105 - 247
Target Start/End: Complemental strand, 11170260 - 11170114
Alignment:
Q  105 atcgtgccacgatttttccagtgccttgcc----aaactaaaacctccatcgtgccacgttgcccagctatcgtgccacgattc-tgcagaaacctgatt 199  Q
    |||| |||||||||||||||||||||||||    ||||  |||||||||||||||||||||||||||| | ||||||||||||| ||||||  | |||||    
T  11170260 atcgagccacgatttttccagtgccttgcctcaaaaaccgaaacctccatcgtgccacgttgcccagcaaccgtgccacgattcctgcagat-cttgatt 11170162  T
Q  200 ttaagttaactctcacaattctccaccttgacttcaaatcagtgatga 247  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  11170161 ttaagttaactctcacaattctccaccttgacttcaaatcaatgatga 11170114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 22 - 216
Target Start/End: Complemental strand, 1321360 - 1321161
Alignment:
Q  22 gctttaaatttgtaccaaatctgcacccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttt 120  Q
    |||| ||||||| | ||||||||||| ||||||||||||| | |||||  | |||||| |||||||||||||||||| ||||||||||||||||||||||    
T  1321360 gcttaaaatttggaacaaatctgcactcaaaaatatgtttctgtttttcgctgccagcacaccatcgtgccacgatgcgaccccatcgtgccacgatttt 1321261  T
Q  121 tccagtgccttgc--caaac-taaaacctc-catcgtgccacgttgcccagctatcgtgccacgatt-ctgcagaaacctgattttaagttaactctcac 215  Q
    | |||||| ||||  ||||| | |||||||  |||||||||||||||||||| |||||||||||||| |||||| | | |||||||||||||||||||||    
T  1321260 ttcagtgctttgcctcaaacttgaaacctctaatcgtgccacgttgcccagcaatcgtgccacgattcctgcag-atcttgattttaagttaactctcac 1321162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 20 - 217
Target Start/End: Complemental strand, 26720469 - 26720267
Alignment:
Q  20 ttgctttaaatttgtaccaaatctgcacccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatt 118  Q
    |||||| ||||||| | |||||||||||  |||||||||||| | |||||  | |||||| |||||||||||||||||| || |||||||||||||||||    
T  26720469 ttgcttaaaatttggaacaaatctgcactaaaaaatatgtttctgtttttcgctgccagcacaccatcgtgccacgatgcgatcccatcgtgccacgatt 26720370  T
Q  119 tttccagtgccttgc--caaac-taaaacctcc-atcgtgccacgttgcccagctatcgtgccacgatt-ctgcagaaacctgattttaagttaactctc 213  Q
    |||||||||| ||||  ||||| | |||||||| ||| ||||||||||| |||| |||||||||||||| |||||| | |||||||||||||||||||||    
T  26720369 tttccagtgctttgcctcaaacttgaaacctccaatcctgccacgttgctcagccatcgtgccacgattcctgcag-atcctgattttaagttaactctc 26720271  T
Q  214 acaa 217  Q
    ||||    
T  26720270 acaa 26720267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 22 - 218
Target Start/End: Original strand, 5522953 - 5523154
Alignment:
Q  22 gctttaaatttgtaccaaatctgcacccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttt 120  Q
    |||| ||||||| | ||||||||||| ||||||||||||| | |||||  | ||||||||||||||||||||||||| || ||||| |||||||||||||    
T  5522953 gcttaaaatttgaaacaaatctgcactcaaaaatatgtttctgtttttcgctgccagcgcaccatcgtgccacgatgcgatcccattgtgccacgatttt 5523052  T
Q  121 tccagtgccttgcc---aaactaaaacctcc-atcgtgccacgttgcccagctatcgtgccacgatt-ctgcagaaacctgattttaagttaactctcac 215  Q
    |||||| |||||||   ||||| ||||| || ||||||||| |||||||||| ||| |||||||||| || ||| | | |||||||||||||||||||||    
T  5523053 tccagtaccttgcctcaaaactgaaaccaccaatcgtgccatgttgcccagcaatcttgccacgattcctccag-atcttgattttaagttaactctcac 5523151  T
Q  216 aat 218  Q
    |||    
T  5523152 aat 5523154  T

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Target: chr3; HSP #19
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 91 - 212
Target Start/End: Original strand, 10192401 - 10192525
Alignment:
Q  91 cacgatgagaccccatcgtgccacgatttttccagtgccttgcc---aaactaaaacctccatcgtgccacgttgcccagctatcgtgccacgattctgc 187  Q
    ||||||| || |||||||||||||||||||||||||||||||||   ||||| ||||||||||||||||||||||||  || ||||||||||||||| ||    
T  10192401 cacgatgcgatcccatcgtgccacgatttttccagtgccttgcctcaaaactgaaacctccatcgtgccacgttgccttgcgatcgtgccacgattccgc 10192500  T
Q  188 agaaacctgattttaagttaactct 212  Q
    | ||| |||||||| ||||||||||    
T  10192501 ataaatctgattttcagttaactct 10192525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 103 - 228
Target Start/End: Complemental strand, 11163008 - 11162879
Alignment:
Q  103 ccatcgtgccacgatttttccagtgccttgcc----aaactaaaacctccatcgtgccacgttgcccagctatcgtgccacgatt-ctgcagaaacctga 197  Q
    |||||||||||| |||||||||||||||||||    ||||| |||||||||||||||||||||||||||| |||||||||||||| |||||| | | |||    
T  11163008 ccatcgtgccacaatttttccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgcccagcaatcgtgccacgattcctgcag-atcttga 11162910  T
Q  198 ttttaagttaactctcacaattctccacctt 228  Q
    ||||||||||||||||||| || ||||||||    
T  11162909 ttttaagttaactctcacagttttccacctt 11162879  T

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Target: chr3; HSP #21
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 22 - 216
Target Start/End: Original strand, 32264381 - 32264580
Alignment:
Q  22 gctttaaatttgtaccaaatctgcacccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttt 120  Q
    |||| ||||||| | ||||||||||||||||||||||||| | || ||  | |||||||||||||||||||||| ||  | |||||||||||||||        
T  32264381 gcttaaaatttgaaacaaatctgcacccaaaaatatgtttctgttattcgctgccagcgcaccatcgtgccacgttgcaagcccatcgtgccacgaaaaa 32264480  T
Q  121 tccagtgccttgcc----aaactaaaacctcc-atcgtgccacgttgcccagctatcgtgccacga-ttctgcagaaacctgattttaagttaactctca 214  Q
    ||||||| ||||||    ||||| |||||||| ||||||||||||| |||||| |||||||||||| ||||||| |||||||||||||||||||||||||    
T  32264481 tccagtgacttgcctcaaaaactgaaacctccaatcgtgccacgtt-cccagccatcgtgccacgatttctgca-aaacctgattttaagttaactctca 32264578  T

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Target: chr3; HSP #22
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 91 - 212
Target Start/End: Original strand, 10085481 - 10085605
Alignment:
Q  91 cacgatgagaccccatcgtgccacgatttttccagtgccttgcc---aaactaaaacctccatcgtgccacgttgcccagctatcgtgccacgattctgc 187  Q
    ||||||| || |||||||||||||||||||||||||||||||||   ||||| ||||||||||||||||||||||||  || ||| ||||||||||| ||    
T  10085481 cacgatgtgatcccatcgtgccacgatttttccagtgccttgcctcaaaactgaaacctccatcgtgccacgttgccttgcgatcatgccacgattccgc 10085580  T
Q  188 agaaacctgattttaagttaactct 212  Q
    | ||| |||||||| ||||||||||    
T  10085581 ataaatctgattttcagttaactct 10085605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 103 - 216
Target Start/End: Complemental strand, 38889875 - 38889757
Alignment:
Q  103 ccatcgtgccacgatttttccagtgccttgcc----aaactaaaacctccatcgtgccacgttgcccagctatcgtgccacgattctgcag-aaacctga 197  Q
    |||||||||||||||||||||| |||||||||    ||||| ||||||||||||||||||||||||  || ||||| |||||||||||||| |||||| |    
T  38889875 ccatcgtgccacgatttttccaatgccttgcctaaaaaactgaaacctccatcgtgccacgttgccttgccatcgtaccacgattctgcagaaaacctaa 38889776  T
Q  198 ttttaagttaactctcaca 216  Q
    |||||||||||||||||||    
T  38889775 ttttaagttaactctcaca 38889757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 170 - 247
Target Start/End: Original strand, 4308772 - 4308849
Alignment:
Q  170 atcgtgccacgattctgcagaaacctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatga 247  Q
    |||||| ||||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4308772 atcgtggcacgattctccagaattctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatga 4308849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 171 - 247
Target Start/End: Complemental strand, 43228077 - 43228001
Alignment:
Q  171 tcgtgccacgattctgcagaaacctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatga 247  Q
    ||||| ||||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43228077 tcgtggcacgattctccagaattctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatga 43228001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 22 - 118
Target Start/End: Complemental strand, 3859447 - 3859350
Alignment:
Q  22 gctttaaatttgtaccaaatctgcacccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatt 118  Q
    |||| ||||||| | |||||||||||||||||||| |||| |||| ||  ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  3859447 gcttaaaatttgaaacaaatctgcacccaaaaatacgtttatattattcgccgccagcgcaccatcgtgccacgatgtgaccccatcgtgccacgatt 3859350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 170 - 247
Target Start/End: Original strand, 10595495 - 10595572
Alignment:
Q  170 atcgtgccacgattctgcagaaacctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatga 247  Q
    |||||| ||||||||| ||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10595495 atcgtggcacgattctccagatttctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatga 10595572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 170 - 247
Target Start/End: Original strand, 35918440 - 35918517
Alignment:
Q  170 atcgtgccacgattctgcagaaacctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatga 247  Q
    |||||| ||||||||| || ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35918440 atcgtggcacgattctccataattctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatga 35918517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 170 - 247
Target Start/End: Original strand, 47878635 - 47878712
Alignment:
Q  170 atcgtgccacgattctgcagaaacctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatga 247  Q
    |||||| ||||||||| ||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47878635 atcgtggcacgattctccagatttctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatga 47878712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 170 - 247
Target Start/End: Complemental strand, 54192943 - 54192866
Alignment:
Q  170 atcgtgccacgattctgcagaaacctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatga 247  Q
    |||||| ||||||||| ||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54192943 atcgtggcacgattctccagatttctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatga 54192866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 20 - 127
Target Start/End: Original strand, 10958659 - 10958767
Alignment:
Q  20 ttgctttaaatttgtaccaaatctgcacccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatt 118  Q
    |||||| ||||||| | |||||||||||| ||||||| |||| | || ||  | ||||||||||||||||||||||||| ||||||||||||||||||||    
T  10958659 ttgcttaaaatttggaacaaatctgcacctaaaaatacgtttctgttattggctgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatt 10958758  T
Q  119 tttccagtg 127  Q
    |||||||||    
T  10958759 tttccagtg 10958767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 194 - 247
Target Start/End: Original strand, 10094576 - 10094629
Alignment:
Q  194 ctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatga 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10094576 ctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatga 10094629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 194 - 247
Target Start/End: Complemental strand, 10901420 - 10901367
Alignment:
Q  194 ctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatga 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10901420 ctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatga 10901367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 194 - 247
Target Start/End: Complemental strand, 16461875 - 16461822
Alignment:
Q  194 ctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatga 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16461875 ctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatga 16461822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 97
Target Start/End: Original strand, 6066134 - 6066210
Alignment:
Q  21 tgctttaaatttgtaccaaatctgcacccaaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatg 97  Q
    ||||| |||| |||| ||||||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  6066134 tgcttaaaatctgtaacaaatctgctcccaaaaatacattttatttttatccgccagcgcaccatcgtgccacgatg 6066210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 103 - 216
Target Start/End: Original strand, 6719532 - 6719651
Alignment:
Q  103 ccatcgtgccacgatttttccagtgccttgcc---aaactaaaacctcc---atcgtgccacgttgcccagctatcgtgccacgattctgcagaaacctg 196  Q
    |||||||||||||||||||||||||| |||||   ||||| |||||||    ||||||||||| |||||  | ||||||||||||||  |||||||||||    
T  6719532 ccatcgtgccacgatttttccagtgcattgcctaaaaactgaaacctctccaatcgtgccacgatgcccttcaatcgtgccacgattaagcagaaacctg 6719631  T
Q  197 attttaagttaactctcaca 216  Q
    |||||||||||| |||||||    
T  6719632 attttaagttaattctcaca 6719651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 194 - 247
Target Start/End: Original strand, 10201462 - 10201515
Alignment:
Q  194 ctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatga 247  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  10201462 ctgattttaagttaaatctcacaattctccaccttgacttcaaatcagtgatga 10201515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 6719450 - 6719546
Alignment:
Q  1 cttaaaatctttaacatatttgctttaaatttgtaccaaatctgcacccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgat 96  Q
    |||||||||| ||||| || ||||| |||| |||| ||||||||||||||||||||||||| | || ||  ||||||||||||||||||||||||||    
T  6719450 cttaaaatctgtaacaaatctgcttaaaatctgtatcaaatctgcacccaaaaatatgtttctgttattcgccgccagcgcaccatcgtgccacgat 6719546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 170 - 217
Target Start/End: Complemental strand, 25388664 - 25388617
Alignment:
Q  170 atcgtgccacgattctgcagaaacctgattttaagttaactctcacaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  25388664 atcgtgccacgattctgcagaaacctgattttaagttaactctcacaa 25388617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 27 - 216
Target Start/End: Complemental strand, 24177193 - 24176999
Alignment:
Q  27 aaatttgtaccaaatctgcacccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccag 125  Q
    ||||||| | |||||||||||  ||||||| |||| | |||||  || ||| ||||||||||||||||  || || |||||||||||||  |||||||||    
T  24177193 aaatttggaacaaatctgcacttaaaaatacgtttatgtttttcgcctccaacgcaccatcgtgccacattgcgatcccatcgtgccacattttttccag 24177094  T
Q  126 tgccttgc--ca-aactaaaacctcca-tcgtgccacgttgcccagctatcgtgccacga-ttctgcagaaacctgattttaagttaactctcaca 216  Q
    || |||||  || |||| ||||  ||| |||||||||||||||| || | |||||||||| |||| ||| ||| ||||||||||||||||||||||    
T  24177093 tgacttgcttcagaactgaaacaaccaatcgtgccacgttgccctgcaaacgtgccacgatttctccag-aacttgattttaagttaactctcaca 24176999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 170 - 221
Target Start/End: Complemental strand, 3859363 - 3859312
Alignment:
Q  170 atcgtgccacgattctgcagaaacctgattttaagttaactctcacaattct 221  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  3859363 atcgtgccacgattatgcagaaacctgattttaagttaactctcacatttct 3859312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 141 - 218
Target Start/End: Complemental strand, 32218912 - 32218834
Alignment:
Q  141 aaacctcca-tcgtgccacgttgcccagctatcgtgccacgatt-ctgcagaaacctgattttaagttaactctcacaat 218  Q
    ||||||||| |||||||||||||||||   |||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  32218912 aaacctccaatcgtgccacgttgcccaatcatcgtgccacgatttctgcagaa-cctgattttaagttaactctcacaat 32218834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 170 - 216
Target Start/End: Original strand, 6066245 - 6066291
Alignment:
Q  170 atcgtgccacgattctgcagaaacctgattttaagttaactctcaca 216  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||    
T  6066245 atcgtgccacaattctgcagaaacctgattttaagttaactctcaca 6066291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 149 - 216
Target Start/End: Original strand, 48362119 - 48362186
Alignment:
Q  149 atcgtgccacgttgcccagctatcgtgccacga-ttctgcagaaacctgattttaagttaactctcaca 216  Q
    |||||||||||||||||| | |||||||||||| |||| ||| ||||||||||||||||||||||||||    
T  48362119 atcgtgccacgttgcccaaccatcgtgccacgatttctacag-aacctgattttaagttaactctcaca 48362186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 22 - 100
Target Start/End: Original strand, 10084731 - 10084810
Alignment:
Q  22 gctttaaatttgtaccaaatctgcacccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgaga 100  Q
    |||| ||||||| | ||||||||||| ||||||||||||| | |||||  | ||||||||||||||||||||||||||||    
T  10084731 gcttaaaatttggaacaaatctgcactcaaaaatatgtttctgtttttcgctgccagcgcaccatcgtgccacgatgaga 10084810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 103 - 158
Target Start/End: Original strand, 6066195 - 6066254
Alignment:
Q  103 ccatcgtgccacgatttttccagtgccttgcc----aaactaaaacctccatcgtgccac 158  Q
    ||||||||||||||| ||||||||||||||||    ||||||||||||||||||||||||    
T  6066195 ccatcgtgccacgatgtttccagtgccttgcccaaaaaactaaaacctccatcgtgccac 6066254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 22 - 99
Target Start/End: Original strand, 10191651 - 10191729
Alignment:
Q  22 gctttaaatttgtaccaaatctgcacccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgag 99  Q
    |||| ||||||| | ||||| ||||| ||||||||||||| | |||||  | |||||||||||||||||||||||||||    
T  10191651 gcttaaaatttggaacaaatttgcactcaaaaatatgtttctgtttttcgctgccagcgcaccatcgtgccacgatgag 10191729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 127
Target Start/End: Original strand, 4308648 - 4308725
Alignment:
Q  50 aaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtg 127  Q
    ||||||| ||||||||||||||  | | |||||||||||| ||||||  || || |||||| ||||||||||||||||    
T  4308648 aaaaatacgttttatttttatcttcaatcgcaccatcgtggcacgattcgatccaatcgtggcacgatttttccagtg 4308725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 127
Target Start/End: Complemental strand, 45882804 - 45882752
Alignment:
Q  75 cagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtg 127  Q
    |||||||||||||||||||| ||  | ||||||||| ||||||||||||||||    
T  45882804 cagcgcaccatcgtgccacgttgcaatcccatcgtggcacgatttttccagtg 45882752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 217
Target Start/End: Complemental strand, 5858243 - 5858196
Alignment:
Q  170 atcgtgccacgattctgcagaaacctgattttaagttaactctcacaa 217  Q
    |||||| ||||||||| ||||  |||||||||||||||||||||||||    
T  5858243 atcgtggcacgattctccagattcctgattttaagttaactctcacaa 5858196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 97
Target Start/End: Original strand, 9604979 - 9605026
Alignment:
Q  50 aaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatg 97  Q
    ||||||||||||||||||||||  | | ||||||||||||||||||||    
T  9604979 aaaaatatgttttatttttatcttcaatcgcaccatcgtgccacgatg 9605026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 216
Target Start/End: Original strand, 27101751 - 27101797
Alignment:
Q  170 atcgtgccacgattctgcagaaacctgattttaagttaactctcaca 216  Q
    |||||| ||||||||| |||||  |||||||||||||||||||||||    
T  27101751 atcgtggcacgattctccagaattctgattttaagttaactctcaca 27101797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #53
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 216
Target Start/End: Complemental strand, 43225873 - 43225827
Alignment:
Q  170 atcgtgccacgattctgcagaaacctgattttaagttaactctcaca 216  Q
    |||||| ||||||||| |||||  |||||||||||||||||||||||    
T  43225873 atcgtggcacgattctccagaattctgattttaagttaactctcaca 43225827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #54
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 216
Target Start/End: Original strand, 51727497 - 51727543
Alignment:
Q  170 atcgtgccacgattctgcagaaacctgattttaagttaactctcaca 216  Q
    |||||| ||||||||| |||||  |||||||||||||||||||||||    
T  51727497 atcgtggcacgattctccagaattctgattttaagttaactctcaca 51727543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #55
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 127
Target Start/End: Original strand, 27101627 - 27101704
Alignment:
Q  50 aaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtg 127  Q
    ||||||| ||||||||||||||  | | ||||||||| || ||||||  || || |||||| ||||||||||||||||    
T  27101627 aaaaatacgttttatttttatcttcaatcgcaccatcttggcacgattcgatccaatcgtggcacgatttttccagtg 27101704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #56
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 35777342 - 35777301
Alignment:
Q  20 ttgctttaaatttgtaccaaatctgcacccaaaaatatgttt 61  Q
    |||||| |||| |||| |||||||||||||||||||||||||    
T  35777342 ttgcttaaaatctgtaacaaatctgcacccaaaaatatgttt 35777301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #57
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 127
Target Start/End: Original strand, 35918316 - 35918393
Alignment:
Q  50 aaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtg 127  Q
    ||||||| ||||||||||||||  | | |||||||||||| ||| ||  || || ||||||| |||||||||||||||    
T  35918316 aaaaatacgttttatttttatcttcaatcgcaccatcgtggcactattcgatccaatcgtgctacgatttttccagtg 35918393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #58
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 123
Target Start/End: Complemental strand, 43228181 - 43228108
Alignment:
Q  50 aaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttcc 123  Q
    ||||||| ||||||||||||||  | | |||||||||||| ||||||  || || |||||| ||||||||||||    
T  43228181 aaaaatacgttttatttttatcttcaatcgcaccatcgtggcacgattcgatccaatcgtggcacgatttttcc 43228108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #59
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 38889937 - 38889897
Alignment:
Q  21 tgctttaaatttgtaccaaatctgcacccaaaaatatgttt 61  Q
    ||||| |||| |||| |||||||||||||||||||||||||    
T  38889937 tgcttaaaatctgtaacaaatctgcacccaaaaatatgttt 38889897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 167; Significance: 1e-89; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 32 - 247
Target Start/End: Original strand, 36559170 - 36559389
Alignment:
Q  32 tgtaccaaatctgcacccaaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgcctt 131  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  36559170 tgtaacaaatctgctcccaaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgcctt 36559269  T
Q  132 gcc----aaactaaaacctccatcgtgccacgttgcccagctatcgtgccacgattctgcagaaacctgattttaagttaactctcacaattctccacct 227  Q
    |||    |||||||||||||||||||||| ||  |||||||  ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  36559270 gcccaaaaaactaaaacctccatcgtgccgcgaagcccagccgtcgtgccacgattgtgcagaaacctgattttaagttaactctcacaattctccacct 36559369  T
Q  228 tgacttcaaatcagtgatga 247  Q
    ||||||||||||||||||||    
T  36559370 tgacttcaaatcagtgatga 36559389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 27 - 245
Target Start/End: Original strand, 19502356 - 19502579
Alignment:
Q  27 aaatttgtaccaaatctgcacccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccag 125  Q
    ||||||| | |||||||||| |||||||||||||| | || ||   |||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  19502356 aaatttggatcaaatctgcaaccaaaaatatgtttctgttattcgtcgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccag 19502455  T
Q  126 tgccttgcc----aaactaaaacctccatcgtgccacgttgcccagctatcgtgccacgattctgcagaaacctgattttaagttaactctcacaattct 221  Q
    |||||||||    ||||| ||||||||||||||||||||||||  || ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  19502456 tgccttgcctaaaaaactgaaacctccatcgtgccacgttgccttgccatcgtgccacgattctgcagaaacctgattttaagttaactatcacaattct 19502555  T
Q  222 ccaccttgacttcaaatcagtgat 245  Q
    ||||||||| ||||||||||||||    
T  19502556 ccaccttgaattcaaatcagtgat 19502579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 32 - 216
Target Start/End: Original strand, 45332487 - 45332675
Alignment:
Q  32 tgtaccaaatctgcacccaaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgcctt 131  Q
    |||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||    
T  45332487 tgtaacaaatctgctcccaaaaatacgttttatttttatccgccagcgcaccatcgtgccacgatgtgaccccatcgttccacgatttttccagttcctt 45332586  T
Q  132 gcc----aaactaaaacctccatcgtgccacgttgcccagctatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 216  Q
    |||    |||||||||||||||||||||| ||  |||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  45332587 gcccaaaaaactaaaacctccatcgtgccgcgaagcccagccgtcgtgccacgattctgcagaaacctgattttaagttaactctcaca 45332675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 22 - 217
Target Start/End: Complemental strand, 27104714 - 27104514
Alignment:
Q  22 gctttaaatttgtaccaaatctgcacccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttt 120  Q
    |||| ||||||| | ||||||||||| ||||||||||||| | |||||  | ||||||||||||||||||||||||| || |||||||||||||||||||    
T  27104714 gcttaaaatttggaacaaatctgcactcaaaaatatgtttatgtttttccctgccagcgcaccatcgtgccacgatgcgatcccatcgtgccacgatttt 27104615  T
Q  121 tccagtgccttgcc----aaactaaaacctccatcgtgccacgttgcccagctatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 216  Q
    ||||||||||||||    ||||| |||||||||||||||||||||||||  | ||||||||||||||||||||||| ||||||||||||||||||| |||    
T  27104614 tccagtgccttgcctcaaaaactgaaacctccatcgtgccacgttgcccttcaatcgtgccacgattctgcagaaatctgattttaagttaactcttaca 27104515  T
Q  217 a 217  Q
    |    
T  27104514 a 27104514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 22 - 217
Target Start/End: Original strand, 24162552 - 24162753
Alignment:
Q  22 gctttaaatttgtaccaaatctgcacccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttt 120  Q
    |||| ||||||| | |||||||||||||||||||| |||| || | ||  | |||||||||| |||||||||||||| ||||||||||||||||||||||    
T  24162552 gcttaaaatttgaaacaaatctgcacccaaaaatacgtttctaatattcgcagccagcgcacaatcgtgccacgatgcgaccccatcgtgccacgatttt 24162651  T
Q  121 tccagtgccttgcc-----aaactaaaacctccatcgtgccacgttgcccagctatcgtgccacgattctgcagaaacctgattttaagttaactctcac 215  Q
    ||||||||||||||     ||||| |||||||||||||||||||||||||| | || ||||||||||||||||||||| |||||||||||||||||||||    
T  24162652 tccagtgccttgcctcaaaaaactgaaacctccatcgtgccacgttgcccaaccattgtgccacgattctgcagaaacttgattttaagttaactctcac 24162751  T
Q  216 aa 217  Q
    ||    
T  24162752 aa 24162753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 27 - 216
Target Start/End: Original strand, 19504690 - 19504884
Alignment:
Q  27 aaatttgtaccaaatctgcacccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccag 125  Q
    ||||||| | |||||||||||| |||||| ||||| | || ||   |||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  19504690 aaatttggaacaaatctgcacctaaaaatgtgtttctgttattcgtcgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgatttttccag 19504789  T
Q  126 tgccttgcc----aaactaaaacctccatcgtgccacgttgcccagctatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 216  Q
    |||||||||    ||| ||||||||||||||||||||||||||  || ||||||||| |||||||| |||||||||||||||||||||| |||||    
T  19504790 tgccttgcctaaaaaattaaaacctccatcgtgccacgttgccttgccatcgtgccatgattctgctgaaacctgattttaagttaactttcaca 19504884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 22 - 247
Target Start/End: Original strand, 6259155 - 6259385
Alignment:
Q  22 gctttaaatttgtaccaaatctgcacccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttt 120  Q
    |||| ||||||| | ||| ||||||||||||||||||||| | || ||  ||||||||||||||||||| |||| || || |||||||||||||||||||    
T  6259155 gcttaaaatttggaacaagtctgcacccaaaaatatgtttctgttattcaccgccagcgcaccatcgtgtcacgttgcgatcccatcgtgccacgatttt 6259254  T
Q  121 tccagtgccttgcc---aaactaaaacctcca-tcgtgccacgttgcccagctatcgtgccacgatt-ctgcagaaacctgattttaagttaactctcac 215  Q
    ||||||| ||| ||   ||||| |||| |||| | |||||||||||| |||| |||||||||||||| |||||||| |||||||||||||||||||||      
T  6259255 tccagtgactttcctcaaaactgaaacatccaatagtgccacgttgcacagccatcgtgccacgatttctgcagaa-cctgattttaagttaactctctt 6259353  T
Q  216 aattctccaccttgacttcaaatcagtgatga 247  Q
    |||||||||||||||||| |||||||||||||    
T  6259354 aattctccaccttgactttaaatcagtgatga 6259385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 82 - 216
Target Start/End: Original strand, 36561539 - 36561677
Alignment:
Q  82 ccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgccttgcc----aaactaaaacctccatcgtgccacgttgcccagctatcgtgcc 177  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||  |  |||||||  |||||||    
T  36561539 ccatcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcccaaaaaactaaaacctccatcgtgccgtgaagcccagccgtcgtgcc 36561638  T
Q  178 acgattctgcagaaacctgattttaagttaactctcaca 216  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  36561639 acgattgtgcagaaacctgattttaagttaactctcaca 36561677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 37 - 219
Target Start/End: Original strand, 21521050 - 21521237
Alignment:
Q  37 caaatctgcacccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgccttg--- 132  Q
    |||||||||||||||||||| |||| | || ||  | |||||||||||||||||||||| || || ||||||||| |||||||||||||||| ||||       
T  21521050 caaatctgcacccaaaaatacgtttatgttattcgctgccagcgcaccatcgtgccacgttgcgatcccatcgtggcacgatttttccagtggcttgctt 21521149  T
Q  133 ccaaactaaaacctcc-atcgtgccacgttgcccagctatcgtgccacgatt-ctgcagaaacctgattttaagttaactctcacaatt 219  Q
    | ||||| |||||||| |||||||||||||||||||| |||||||||||||| ||| || |||||||||||||||||||||||||||||    
T  21521150 caaaactgaaacctccaatcgtgccacgttgcccagccatcgtgccacgattcctgtag-aacctgattttaagttaactctcacaatt 21521237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 22 - 216
Target Start/End: Complemental strand, 42064430 - 42064231
Alignment:
Q  22 gctttaaatttgtaccaaatctgcacccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttt 120  Q
    |||| ||||||| | |||||||||||  |||||||||||| | |||||  | ||||||||||||||||||||||||| || |||||||||||||||||||    
T  42064430 gcttaaaatttggaacaaatctgcactaaaaaatatgtttctgtttttcgctgccagcgcaccatcgtgccacgatgtgatcccatcgtgccacgatttt 42064331  T
Q  121 tccagtgccttgc--caaac-taaaacctcca-tcgtgccacgttgcccagctatcgtgccacgatt-ctgcagaaacctgattttaagttaactctcac 215  Q
    |||||||| ||||  ||||| | ||||||||| |||| |||||||||||||| |||||||||||||| |||||| | | |||||||||||||||||||||    
T  42064330 tccagtgctttgcctcaaacttgaaacctccagtcgtaccacgttgcccagcaatcgtgccacgattcctgcag-atcttgattttaagttaactctcac 42064232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 32 - 117
Target Start/End: Original strand, 36561447 - 36561532
Alignment:
Q  32 tgtaccaaatctgcacccaaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgat 117  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  36561447 tgtaacaaatctgctcccaaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgat 36561532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 103 - 218
Target Start/End: Original strand, 43623968 - 43624087
Alignment:
Q  103 ccatcgtgccacgatttttccagtgccttgcc---aaactaaaacctcca-tcgtgccacgttgcccagctatcgtgccacgattctgcagaaacctgat 198  Q
    ||||||||||||||||||| ||||||||||||   ||||| ||||||||| |||||||| |||||||||| ||||||||| |||||||||||||||||||    
T  43623968 ccatcgtgccacgattttttcagtgccttgcctcaaaactgaaacctccaatcgtgccatgttgcccagccatcgtgccatgattctgcagaaacctgat 43624067  T
Q  199 tttaagttaactctcacaat 218  Q
    |||||||||||| |||||||    
T  43624068 tttaagttaactttcacaat 43624087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 27 - 128
Target Start/End: Original strand, 13910389 - 13910491
Alignment:
Q  27 aaatttgtaccaaatctgcacccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccag 125  Q
    ||||||| | ||||||||||| ||||||||||||| | |||||  | ||||||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  13910389 aaatttggaacaaatctgcactcaaaaatatgtttctgtttttcgctgccagcgcaccatcgtgccacaatgcgaccccatcgtgccacgatttttccag 13910488  T
Q  126 tgc 128  Q
    |||    
T  13910489 tgc 13910491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 170 - 247
Target Start/End: Complemental strand, 17943256 - 17943179
Alignment:
Q  170 atcgtgccacgattctgcagaaacctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatga 247  Q
    |||||| ||||||||| ||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17943256 atcgtggcacgattctccagatttctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatga 17943179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 170 - 247
Target Start/End: Original strand, 20050508 - 20050585
Alignment:
Q  170 atcgtgccacgattctgcagaaacctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatga 247  Q
    |||||| ||||||||| |||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20050508 atcgtggcacgattctccagaattttgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatga 20050585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 170 - 247
Target Start/End: Original strand, 22712980 - 22713057
Alignment:
Q  170 atcgtgccacgattctgcagaaacctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatga 247  Q
    |||||| ||||||||| ||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22712980 atcgtggcacgattctccagatttctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatga 22713057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 170 - 247
Target Start/End: Complemental strand, 30478712 - 30478635
Alignment:
Q  170 atcgtgccacgattctgcagaaacctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatga 247  Q
    |||||| ||||||||| ||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30478712 atcgtggcacgattctccagatttctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatga 30478635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 194 - 247
Target Start/End: Complemental strand, 2740616 - 2740563
Alignment:
Q  194 ctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatga 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2740616 ctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatga 2740563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 194 - 247
Target Start/End: Complemental strand, 39686658 - 39686605
Alignment:
Q  194 ctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatga 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39686658 ctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatga 39686605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 135 - 217
Target Start/End: Original strand, 40032504 - 40032587
Alignment:
Q  135 aaactaaaacctcca-tcgtgccacgttgcccagctatcgtgccacga-ttctgcagaaacctgattttaagttaactctcacaa 217  Q
    ||||| ||||||||| ||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||    
T  40032504 aaactgaaacctccaatcgtgccacgttgcccagccatcgtgccacgatttctgcag-aacctgattttaagttaactctcacaa 40032587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 216
Target Start/End: Original strand, 22407747 - 22407948
Alignment:
Q  20 ttgctttaaatttgtaccaaatctgcacccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatt 118  Q
    |||||| ||||||  | |||||||||||||||||||| |||| | || ||  | |||| ||||||||||||||||| || || ||||||||||||| |||    
T  22407747 ttgcttaaaattttgaacaaatctgcacccaaaaatacgtttctgttattcgctgccaacgcaccatcgtgccacgttgtgatcccatcgtgccacaatt 22407846  T
Q  119 tttccagtgccttgcc---aaactaaaacctcc-atcgtgccacgttgcccagctatcgtgccacgatt-ctgcagaaacctgattttaagttaactctc 213  Q
    ||| || || ||||||   ||||| |||| ||| ||||||||| ||| |||  | |||||||||||||| |||||| ||||| ||||||| |||||||||    
T  22407847 ttttcactgacttgcctcaaaactgaaacatccaatcgtgccatgttacccttcaatcgtgccacgattcctgcag-aacctaattttaaattaactctc 22407945  T
Q  214 aca 216  Q
    |||    
T  22407946 aca 22407948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 191 - 247
Target Start/End: Original strand, 28462819 - 28462875
Alignment:
Q  191 aacctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatga 247  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  28462819 aacctgattttaagttaactttcataattctccaccttgacttcaaatcagtgatga 28462875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 193 - 247
Target Start/End: Original strand, 30262268 - 30262322
Alignment:
Q  193 cctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatga 247  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||    
T  30262268 cctgattttaagttaactctcacaattctccacctcgacttcaaatcaatgatga 30262322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 103 - 211
Target Start/End: Original strand, 6264546 - 6264658
Alignment:
Q  103 ccatcgtgccacgatttttccagtgccttgcc---aaactaaaacctcc-atcgtgccacgttgcccagctatcgtgccacga-ttctgcagaaacctga 197  Q
    ||||||||||||||||||||||||| ||||||   ||||| |||| ||| ||| |||||||||||||| | ||||||| || | |||||||| |||||||    
T  6264546 ccatcgtgccacgatttttccagtgacttgcctcaaaactgaaacatccaatcatgccacgttgcccaaccatcgtgcaacaatttctgcag-aacctga 6264644  T
Q  198 ttttaagttaactc 211  Q
    ||||||||||||||    
T  6264645 ttttaagttaactc 6264658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 218
Target Start/End: Original strand, 18800702 - 18800821
Alignment:
Q  103 ccatcgtgccacgatttttccagtgccttgc--ca-aactaaaacctcc-atcgtgccacgttgcccagctatcgtgccacga-ttctgcagaaacctga 197  Q
    |||||||||||| |||||||||||| |||||  || |||| |||| ||| |||||| ||||||||||| | | |||||||||| |||| ||| ||| |||    
T  18800702 ccatcgtgccacaatttttccagtgacttgcttcataactgaaacatccaatcgtgtcacgttgcccaacaaacgtgccacgatttctccag-aacatga 18800800  T
Q  198 ttttaagttaactctcacaat 218  Q
    |||||||||||||||||||||    
T  18800801 ttttaagttaactctcacaat 18800821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 216
Target Start/End: Original strand, 45280457 - 45280503
Alignment:
Q  170 atcgtgccacgattctgcagaaacctgattttaagttaactctcaca 216  Q
    |||||| ||||||||| |||||  |||||||||||||||||||||||    
T  45280457 atcgtggcacgattctccagaattctgattttaagttaactctcaca 45280503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 6146 - 5927
Alignment:
Q  1 cttaaaatctttaacatatttgctttaaatttgtaccaaatctgcacccaaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatgaga 100  Q
    ||||||| || ||||| || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  6146 cttaaaaactgtaacaaatctgctttaaatttgtaacaaatctgcacccaaaaatatgttttatttttatccgccagcgcaccatcgtgccatgatgaga 6047  T
Q  101 ccccatcgtgccacgatttttccagtgccttgcc----aaactaaaacctccatcgtgccacgttgcccagctatcgtgccacgattctgcagaaacctg 196  Q
    ||||||| ||||||||||||||||||||||||||    |||||||||||||||||||||| ||  |||||||  ||||||||||||| ||||||||||||    
T  6046 ccccatcatgccacgatttttccagtgccttgcctaaaaaactaaaacctccatcgtgccgcgaagcccagccgtcgtgccacgattgtgcagaaacctg 5947  T
Q  197 attttaagttaactctcaca 216  Q
    ||||||||||||||||||||    
T  5946 attttaagttaactctcaca 5927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 37 - 216
Target Start/End: Original strand, 12871 - 13054
Alignment:
Q  37 caaatctgcacccaaaaatatgttttatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgccttgcc-- 134  Q
    ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  12871 caaatctgctcccaaaaatacgttttatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttttccagtgccttgccca 12970  T
Q  135 --aaactaaaacctccatcgtgccacgttgcccagctatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 216  Q
      ||||||||||||||||||||||||||||||  |  |||||||||||||||||||||||||||||||||||||||||||||||    
T  12971 aaaaactaaaacctccatcgtgccacgttgccttgacatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 13054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 22 - 247
Target Start/End: Complemental strand, 2828 - 2598
Alignment:
Q  22 gctttaaatttgtaccaaatctgcacccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttt 120  Q
    |||| ||||||| | |||||||||||||||||||| |||| | || ||  | ||||||||||||||||||||||||| || |||||||||||||||||||    
T  2828 gcttaaaatttggaacaaatctgcacccaaaaatacgtttatgttattcgctgccagcgcaccatcgtgccacgatgcgatcccatcgtgccacgatttt 2729  T
Q  121 tccagtgccttgcc---aaactaaaacctcca-tcgtgccacgttgcccagctatcgtgccacgattc-tgcagaaacctgattttaagttaactctcac 215  Q
    |||||| |||||||   ||||| ||||||||| ||||||||||||||| ||| |||||| ||| |||| ||||||  | |||||||||||||||||||||    
T  2728 tccagtaccttgcctcaaaactgaaacctccaatcgtgccacgttgcctagcaatcgtgtcacaattcctgcagat-cttgattttaagttaactctcac 2630  T
Q  216 aattctccaccttgacttcaaatcagtgatga 247  Q
    ||||||||||||||||||||||||||||||||    
T  2629 aattctccaccttgacttcaaatcagtgatga 2598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 22 - 247
Target Start/End: Original strand, 69635 - 69864
Alignment:
Q  22 gctttaaatttgtaccaaatctgcacccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttt 120  Q
    |||| ||||||| | ||||||||||||||||| ||||||| | |||||  | |||||| ||||||||||| |||||| || ||||| |||| ||||||||    
T  69635 gcttaaaatttggaacaaatctgcacccaaaa-tatgtttctgtttttcgctgccagcacaccatcgtgcaacgatgcgatcccattgtgctacgatttt 69733  T
Q  121 tccagtgccttgcc--aaacta-aaacctcca-tcgtgccacgttgcccagctatcgtgccacgattctgcagaaacctgattttaagttaactctcaca 216  Q
    |||||||| |||||  |||||  ||||||||| ||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||| |||    
T  69734 tccagtgctttgcctcaaacttgaaacctccaatcgtgccacgttgcctagccatcgtgccacgattctgcagaaatctgattttaagttaactcttaca 69833  T
Q  217 attctccaccttgacttcaaatcagtgatga 247  Q
    ||||||||| |||||||||||||||||||||    
T  69834 attctccactttgacttcaaatcagtgatga 69864  T

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Target: scaffold0025; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 103 - 218
Target Start/End: Original strand, 73427 - 73546
Alignment:
Q  103 ccatcgtgccacgatttttccagtgccttgcc--aaacta-aaacctcca-tcgtgccacgttgcccagctatcgtgccacgattctgcagaaacctgat 198  Q
    |||||||||||| ||||||||||||| |||||  |||||  ||||||||| ||||||||||||||| ||| ||||||||||||||||||| ||| |||||    
T  73427 ccatcgtgccacaatttttccagtgctttgcctcaaacttgaaacctccaatcgtgccacgttgcctagccatcgtgccacgattctgcataaatctgat 73526  T
Q  199 tttaagttaactctcacaat 218  Q
    |||||||||||||| |||||    
T  73527 tttaagttaactcttacaat 73546  T

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Target: scaffold0068 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 19 - 129
Target Start/End: Complemental strand, 29112 - 29001
Alignment:
Q  19 tttgctttaaatttgtaccaaatctgcacccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgat 117  Q
    ||||||| ||||||||| ||||||||||| ||||||||||||| | |||||  | ||||||||||||||||||||||||| |||||||||||||||||||    
T  29112 tttgcttaaaatttgtaacaaatctgcactcaaaaatatgtttctgtttttcgctgccagcgcaccatcgtgccacgatgcgaccccatcgtgccacgat 29013  T
Q  118 ttttccagtgcc 129  Q
    ||||||||||||    
T  29012 ttttccagtgcc 29001  T

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Target: scaffold0068; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 152 - 217
Target Start/End: Complemental strand, 29005 - 28940
Alignment:
Q  152 gtgccacgttgcccagctatcgtgccacgattctgcagaaacctgattttaagttaactctcacaa 217  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  29005 gtgccacgttgcccagccatcgtgccacgattctgcagaaacctgattttaagttaactctcacaa 28940  T

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Target: scaffold0131 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 22 - 215
Target Start/End: Complemental strand, 14967 - 14768
Alignment:
Q  22 gctttaaatttgtaccaaatctgcacccaaaaatatgttt-tatttttatccgccagcgcaccatcgtgccacgatgagaccccatcgtgccacgatttt 120  Q
    |||| ||||||| | ||||||||||||||||||||||||| | || ||  | ||||||||||||||||| |||| || || |||||||||||||||  ||    
T  14967 gcttaaaatttggaacaaatctgcacccaaaaatatgtttctgttattcgctgccagcgcaccatcgtgtcacgttgtgatcccatcgtgccacgaaatt 14868  T
Q  121 tccagtgccttgcca---aactaaaacctcc-atcgtgccacgttgcccagctatcgtgccacgattc-tgcagaaacctgattttaagttaactctcac 215  Q
    ||||||| ||||||    |||| |||| ||| ||||| |||||||||||  | ||||||||||||||| ||||||| |||||||||||||||||||||||    
T  14867 tccagtgacttgcctcataactgaaacttcccatcgttccacgttgcccttcaatcgtgccacgattcctgcagaatcctgattttaagttaactctcac 14768  T

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Target: scaffold1764 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold1764
Description:

Target: scaffold1764; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 170 - 247
Target Start/End: Complemental strand, 1154 - 1077
Alignment:
Q  170 atcgtgccacgattctgcagaaacctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatga 247  Q
    |||||| ||||||||| ||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1154 atcgtggcacgattctccagatttctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatga 1077  T

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Target: scaffold0552 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0552
Description:

Target: scaffold0552; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 216
Target Start/End: Original strand, 1303 - 1349
Alignment:
Q  170 atcgtgccacgattctgcagaaacctgattttaagttaactctcaca 216  Q
    |||||| ||||||||| |||||  |||||||||||||||||||||||    
T  1303 atcgtggcacgattctccagaattctgattttaagttaactctcaca 1349  T

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Target: scaffold0038 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 216
Target Start/End: Original strand, 41976 - 42022
Alignment:
Q  170 atcgtgccacgattctgcagaaacctgattttaagttaactctcaca 216  Q
    |||||| ||||||||| |||||  |||||||||||||||||||||||    
T  41976 atcgtggcacgattcttcagaattctgattttaagttaactctcaca 42022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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