View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20180_high_4 (Length: 337)
Name: NF20180_high_4
Description: NF20180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20180_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 8 - 321
Target Start/End: Complemental strand, 42871218 - 42870906
Alignment:
| Q |
8 |
agataatacttacaaatggtaactggttactcttaagtacattgtagaaaaactcttctctacatcaaattgacagacgtggaagatcaaaatacgtaca |
107 |
Q |
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| T |
42871218 |
agataaaacttacaaatggtaactggttactct-aagttcattgtagaaaagctcttctctacatcaaattgacagacgtggaagatcaaaatacgtaca |
42871120 |
T |
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| Q |
108 |
cactcaataagctaactaattaaagcaaatgactttcatcaaaatatatcaaatcattgctaaaatcagaagaaaacaccccaaaatcaatttcaagatt |
207 |
Q |
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| T |
42871119 |
cactcaataagctaactaattaaagcaaatgactttcatcaaaatatatcaaatcattgctgaaatcagaagaaaacaccccaaaatcaatttcaagatt |
42871020 |
T |
|
| Q |
208 |
ttgagattcagtgcaggaatacacaatatccttggagagttcaaaatccttaaaatcagaccacaaattaggatccaataagttgtcagtaacatcactc |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42871019 |
ttgagattcagtgcaggaatacacaatatccttggagagttcaaaatccttaaaatcagaccacaaattaggatccaataagttgtcagtaacatcactc |
42870920 |
T |
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| Q |
308 |
ctcggagtagtact |
321 |
Q |
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|||||||||||||| |
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| T |
42870919 |
ctcggagtagtact |
42870906 |
T |
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