View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20180_high_5 (Length: 308)
Name: NF20180_high_5
Description: NF20180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20180_high_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 6 - 293
Target Start/End: Original strand, 3387102 - 3387389
Alignment:
| Q |
6 |
agaagcaaagggtaacgccacagtatctttggcttcttggagtgctaaattgtaccttagaagttgtttctgagagcgtgttccgtcgtccttgaccata |
105 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
3387102 |
agaatcaaagggtaacgccacggtatctttggcttcttggagtgctaaattgtaccttagaagttgttcctgagagcgtgttccgtcgtccttgaccata |
3387201 |
T |
|
| Q |
106 |
agttgcgacaattctacgtcgaaaaggattggcacgactcnnnnnnnngtctccatgagaagagcgagttcatggagacaataataagagtcgcaataat |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3387202 |
agttgcgacaattctacgtcgaaaaggattggcacggctcttttttttgtctccatgagaagagcgagttcatggagacaataataagagtcgcaataat |
3387301 |
T |
|
| Q |
206 |
taggagagaagacaacaacaccaaccttacaaccaaaaatggctttgtcgatactaggactgagtttgtcccctagtttcatgttctt |
293 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
3387302 |
taggagagaagacaacaacaccaaccttacaatcaaaaatggctttgtcgatattaggactgagtttgtcccctagtttcatgttctt |
3387389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 37 - 291
Target Start/End: Original strand, 3393649 - 3393903
Alignment:
| Q |
37 |
gcttcttggagtgctaaattgtaccttagaagttgtttctgagagcgtgttccgtcgtccttgaccataagttgcgacaattctacgtcgaaaaggattg |
136 |
Q |
| |
|
||||||| ||||||||| | ||||| |||| |||||| |||||| ||||||||||||||||||||||| |||||| || ||||||||| | ||| | |
|
|
| T |
3393649 |
gcttcttctagtgctaaactaaaccttcgaagctgtttcggagagcaagttccgtcgtccttgaccataagctgcgacggttttacgtcgaagaagatag |
3393748 |
T |
|
| Q |
137 |
gcacgactcnnnnnnnngtctccatgagaagagcgagttcatggagacaataataagagtcgcaataattaggagagaagacaacaacaccaaccttaca |
236 |
Q |
| |
|
| ||||||| |||||||| |||||||||||||| |||||||||||||||||||| |||||| ||||||||| || ||||||||||||||| |
|
|
| T |
3393749 |
gaacgactcttttttttgtctccatcagaagagcgagttcgtggagacaataataagagtcacaataacgaggagagaacacggtaacaccaaccttaca |
3393848 |
T |
|
| Q |
237 |
accaaaaatggctttgtcgatactaggactgagtttgtcccctagtttcatgttc |
291 |
Q |
| |
|
||||| ||| ||||| |||||| | || |||||||| ||| ||||||||||| |
|
|
| T |
3393849 |
accaataattgctttatcgatatgatgaaatagtttgtctcctggtttcatgttc |
3393903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 157 - 239
Target Start/End: Complemental strand, 35761698 - 35761616
Alignment:
| Q |
157 |
tccatgagaagagcgagttcatggagacaataataagagtcgcaataattaggagagaagacaacaacaccaaccttacaacc |
239 |
Q |
| |
|
|||||||||||||| || |||||||||||| |||||||||| |||||| | ||||| || ||| |||||||||| || ||||| |
|
|
| T |
35761698 |
tccatgagaagagcaagctcatggagacaaaaataagagtcacaataagttggagaaaacacagcaacaccaactttgcaacc |
35761616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University