View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20180_high_6 (Length: 285)
Name: NF20180_high_6
Description: NF20180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20180_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 156; Significance: 6e-83; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 16 - 202
Target Start/End: Complemental strand, 22881621 - 22881434
Alignment:
| Q |
16 |
ataggaaactt-ttaagacttagaagacgatttgaagaagaggaatgctatttaaagtgaaagatattctaacgaattcatagcgaatgggttatttgca |
114 |
Q |
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| T |
22881621 |
ataggaaacttcttaagacttagaagacgatttgaagaagaggaatgctatttgaagggaaagatattctaacaaattcacagcgaatgggttatttgca |
22881522 |
T |
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| Q |
115 |
ctaagtttggtagttagcggaaaacatggatagtggaggatgaaaatgaaagagaagcgacactgcaattacacgtcatgaatctttc |
202 |
Q |
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| T |
22881521 |
ctaagtttggtagttagtggaaaacatgggtagtggaggatgaaaatgaaagagaagcgacactgcaattacacgtcatgaatctttc |
22881434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 266
Target Start/End: Complemental strand, 22881404 - 22881368
Alignment:
| Q |
230 |
cattttcatttgaagaaagaacaacataaagtcaaag |
266 |
Q |
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| T |
22881404 |
cattttcctttgaagaaagaacaacataaagtcaaag |
22881368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 59 - 149
Target Start/End: Complemental strand, 6837608 - 6837518
Alignment:
| Q |
59 |
atgctatttaaagtgaaagatattctaacgaattcatagcgaatgggttatttgcactaagtttggtagttagcggaaaacatggatagtg |
149 |
Q |
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| T |
6837608 |
atgctatttaaagcgaaatatattataacgaattcacagcgaatggattatttgcactaagtttggtggtaagcagaaaacatgggtagtg |
6837518 |
T |
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