View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20180_low_1 (Length: 960)
Name: NF20180_low_1
Description: NF20180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20180_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 849; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 849; E-Value: 0
Query Start/End: Original strand, 30 - 946
Target Start/End: Complemental strand, 33785027 - 33784111
Alignment:
| Q |
30 |
actagacatgtaggcattgtttccatgcatcacattacatttgacctataataagaaactttaagtaatactagtaattactgaattttaaaatcaatag |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33785027 |
actagacatgtaggcattgtttccatgcatcacattacatttgacctataataagaaactttaagtaatactagtaattactgaattttaaaatcaatag |
33784928 |
T |
|
| Q |
130 |
ttaatctattcatgacttgatgctataatttattgaataagattgtattatcaagaagataaattagtaactagaatgatgctaacaaacattattatga |
229 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33784927 |
ttaatctattcatgacttcatgctataatttattgaataagattgtattatcaagaagataaattagtaactagaatgatgctaacaaacattattatga |
33784828 |
T |
|
| Q |
230 |
ttaatgctgaattaaaaatgtgcacattttcaattttggtgatgcagatcattgaaagatggatatgaaactgaatgtggagaaaggggggttcaattat |
329 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33784827 |
ttaatgctgaattaaaaatgtgcacattttcaattttggtgatgcagatcattgaaagatggatatgaaactgaatgtggagaaaggggggttcaattat |
33784728 |
T |
|
| Q |
330 |
caggaggacaaaagcaaagaatagcaattgcaagggctatacttagaaatccaatcatacttctactagatgaagcaacaagtgctttggatgtgcaatc |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33784727 |
caggaggacaaaagcaaagaatagcaattgcaagggctatacttagaaatccaatcatacttctactagatgaagcaacaagtgctttggatgtgcaatc |
33784628 |
T |
|
| Q |
430 |
agaacaagttgtgcaagaagcacttgataggattatggtaggaagaactaccattgttgtggcacatagacttaacacaatcaaagaacttgactcaatt |
529 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33784627 |
agaacaagttgtgcaagaagcacttgataggattatggtaggaagaactaccattgttgtggcacatagacttaacacaatcaaagaacttgactcaatt |
33784528 |
T |
|
| Q |
530 |
gcttatgtgttagaagggaagattgtggaacaaggaagctattctcagcttaagcacaagagaggtgcttttttcaaccttgccaatcatcaaattcaaa |
629 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33784527 |
gcttatgtgttagaagggaagattgtggaacaaggaagctattctcagcttaagcacaagagaggtgcttttttcaaccttgccaatcatcaaattcaaa |
33784428 |
T |
|
| Q |
630 |
cttaattaatgtacattaactatgtgcaaacattgagaaacataataatgttaatatcctaagtgtttattataatgttgtcttgtctcccaagtacacc |
729 |
Q |
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|||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
33784427 |
cttagttaatgtacattaactatgtgcgaacattgagaaacataataatgttaatatcctaagtgtttattataatgttgtcttgtctcccaagtacatc |
33784328 |
T |
|
| Q |
730 |
taagatgaatttgatttgaggccgtctattcgaacctgaaatcacacagttgtttgtggtaaatgatcttgaccgttcaattaaaattagttttacgttt |
829 |
Q |
| |
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|||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||| |
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| T |
33784327 |
taagatgaatttgatttgaggctgtctattcgaatctggaatcacacagttgtttgtggtagatgatcttgaccgttcaattaaaattaggtctacgttt |
33784228 |
T |
|
| Q |
830 |
gaatcggcttaaactaaagtgcaaaaagtaaactaaatcggacggctaaaaattgttatgcatgcagcaacaatgaagaatccatatttgataattcact |
929 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||| | ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
33784227 |
gaatcggcttaaactaaagtgcgaaaagtaaactaaattgaacggctaaaaactgttatgcatgcagcaacaatggagaatccatatttgataattcact |
33784128 |
T |
|
| Q |
930 |
aaaaactcgtcagtgtt |
946 |
Q |
| |
|
| |||||||| |||||| |
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|
| T |
33784127 |
agaaactcgtaagtgtt |
33784111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 329 - 414
Target Start/End: Complemental strand, 33788455 - 33788370
Alignment:
| Q |
329 |
tcaggaggacaaaagcaaagaatagcaattgcaagggctatacttagaaatccaatcatacttctactagatgaagcaacaagtgc |
414 |
Q |
| |
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|||||||||||||||||||||||||| |||||||| ||||| | | ||||||| | || ||||| || ||||||||||| ||||| |
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| T |
33788455 |
tcaggaggacaaaagcaaagaatagccattgcaagagctatcataaaaaatccagtaattcttctgcttgatgaagcaactagtgc |
33788370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 320 - 415
Target Start/End: Complemental strand, 3431274 - 3431179
Alignment:
| Q |
320 |
gttcaattatcaggaggacaaaagcaaagaatagcaattgcaagggctatacttagaaatccaatcatacttctactagatgaagcaacaagtgct |
415 |
Q |
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||||||||||| || |||||||||||||| || ||||||||||| ||||| | | |||||||| || ||||| |||| |||||||| |||||| |
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| T |
3431274 |
gttcaattatctggtggacaaaagcaaaggattgcaattgcaagagctatgttgaaaaatccaaagatccttctcttagacgaagcaactagtgct |
3431179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 314 - 363
Target Start/End: Complemental strand, 2571745 - 2571696
Alignment:
| Q |
314 |
aggggggttcaattatcaggaggacaaaagcaaagaatagcaattgcaag |
363 |
Q |
| |
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||||| |||||| | ||||| ||||||||||||||||| ||||||||||| |
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|
| T |
2571745 |
aggggagttcaaatgtcagggggacaaaagcaaagaattgcaattgcaag |
2571696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 323 - 414
Target Start/End: Original strand, 27810409 - 27810500
Alignment:
| Q |
323 |
caattatcaggaggacaaaagcaaagaatagcaattgcaagggctatacttagaaatccaatcatacttctactagatgaagcaacaagtgc |
414 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||| || || | ||||||| || ||||| |||||||| || |||||||| |
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| T |
27810409 |
caattatcaggaggacaaaagcagagaatagcaattgcaagggcaatgctgaaaaatccagcaattcttctcctagatgaggctacaagtgc |
27810500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 335 - 422
Target Start/End: Original strand, 5823515 - 5823602
Alignment:
| Q |
335 |
ggacaaaagcaaagaatagcaattgcaagggctatacttagaaatccaatcatacttctactagatgaagcaacaagtgctttggatg |
422 |
Q |
| |
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| T |
5823515 |
ggacaaaagcaaagaattgcaattgcaagggccatattgaagaatccaagaatccttcttcttgatgaagcaacaagtgcattggatg |
5823602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 335 - 422
Target Start/End: Complemental strand, 5832085 - 5831998
Alignment:
| Q |
335 |
ggacaaaagcaaagaatagcaattgcaagggctatacttagaaatccaatcatacttctactagatgaagcaacaagtgctttggatg |
422 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||| | | || |||| || ||||| || ||||||||||||||||| ||||||| |
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| T |
5832085 |
ggacaaaagcaaagaattgcaattgcaagggcaatattgaagaacccaaaaatccttcttcttgatgaagcaacaagtgcattggatg |
5831998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 335 - 422
Target Start/End: Original strand, 5766122 - 5766209
Alignment:
| Q |
335 |
ggacaaaagcaaagaatagcaattgcaagggctatacttagaaatccaatcatacttctactagatgaagcaacaagtgctttggatg |
422 |
Q |
| |
|
||||||||||||||||| |||||||| ||||| ||| | | || |||| || ||||| || ||||||||||||||||| ||||||| |
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|
| T |
5766122 |
ggacaaaagcaaagaattgcaattgctagggcaatattgaagaacccaagaatccttcttctcgatgaagcaacaagtgcattggatg |
5766209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 308 - 360
Target Start/End: Complemental strand, 17872443 - 17872391
Alignment:
| Q |
308 |
ggagaaaggggggttcaattatcaggaggacaaaagcaaagaatagcaattgc |
360 |
Q |
| |
|
|||||||| ||| ||||||||||||| |||||||| ||||||||||||||||| |
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|
| T |
17872443 |
ggagaaagagggattcaattatcaggtggacaaaaacaaagaatagcaattgc |
17872391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 332 - 456
Target Start/End: Complemental strand, 41176907 - 41176783
Alignment:
| Q |
332 |
ggaggacaaaagcaaagaatagcaattgcaagggctatacttagaaatccaatcatacttctactagatgaagcaacaagtgctttgga-tgtgcaatca |
430 |
Q |
| |
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||||||||||| |||||||||||||| |||||||| || || | ||||||| || ||||| || ||||| ||||||||||| ||||| | || ||||| |
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| T |
41176907 |
ggaggacaaaaacaaagaatagcaatagcaagggcaatgctaaaaaatccagcaattcttctcctcgatgaggcaacaagtgcattggactctg-aatca |
41176809 |
T |
|
| Q |
431 |
gaacaagttgtgcaagaagcacttga |
456 |
Q |
| |
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||| | | ||||||||||||||||| |
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| T |
41176808 |
gaaaagctggtgcaagaagcacttga |
41176783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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