View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20180_low_2 (Length: 792)
Name: NF20180_low_2
Description: NF20180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20180_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 761; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 761; E-Value: 0
Query Start/End: Original strand, 15 - 783
Target Start/End: Complemental strand, 47242245 - 47241477
Alignment:
| Q |
15 |
actatgaatgtataagattcatgccttcaattgtggctgcttctgttatctttcttgctagatttattctccggcctggagtacatccttgggtaaatat |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47242245 |
actatgaatgtataagattcatgccttcaattgtggctgcttctgttatctttcttgctagatttattctccggcctggagtacatccttgggtaaatat |
47242146 |
T |
|
| Q |
115 |
ttgatgttattgattttaatctatttgaattctaaaaaacaataatatttcaaggtacttaatgttgcgaatctatttcagacttcatccctatgtgaat |
214 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47242145 |
ttgatgttattgattttaatctatttgaattctaaaaaacaataatatttcaaggtacttaatgttgcgaatctatttcagacttcatccctatgtgaat |
47242046 |
T |
|
| Q |
215 |
gtttgggttacaagtcggctgaattggaagaatgtgttatgattttacatgacttgtatttgtcaagaagggcagcatccttcaaagctgttagggagaa |
314 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47242045 |
gtctgggttacaagtcggctgaattggaagaatgtgttatgattttacatgacttgtatttgtcaagaagggcagcatccttcaaagctgttagggagaa |
47241946 |
T |
|
| Q |
315 |
atacaagcaacaaaaggtgattgttttaacttttaacatttcatttgttatagttaattcttattaatgcaagttggttgacttgaactcattgtctgga |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47241945 |
atacaagcaacaaaaggtgattgttttaacttttaacatttcatttgttatagttaattcttattaatgcaagttggttgacttgaactcattgtctgga |
47241846 |
T |
|
| Q |
415 |
acagttcaaatatgtggcaaacctccctagctcgccagagataccaaattattactttgaagaagactgatgcagtgtgaataacttagtgaatgactga |
514 |
Q |
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| T |
47241845 |
acagttcaaatatgtggcaaacctccctagctcgccagagataccaaattattactttgaagaagactgatgcagtgtgaataacttagtgaatgactga |
47241746 |
T |
|
| Q |
515 |
atgtggttcatgactgacaaatatatttttggtggctatgcggtttgacaatcaacttaattagctcaagcataattatatgatattccagtcactgcct |
614 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47241745 |
atgtggttcatgactgacaaatatatttttggtggctatgcggtttaacaatcaacttaattagctcaagcataattatatgatattccagtcactgcct |
47241646 |
T |
|
| Q |
615 |
gctaattttttatgataatcttaatgaccaagttcctttgtgttcaagttgtcacttgttaatacaacctatgcttttggggtcttgtctttgatagggt |
714 |
Q |
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| T |
47241645 |
gctaattttttatgataatcttaatgaccaagttcctttgtgttcaagttgtcacttgttaatacaacctatgcttttggggtcttgtctttgatagggt |
47241546 |
T |
|
| Q |
715 |
atactacattggttagtgaaacttaaagtgttgttttattgtttatgatttgtatggttgaagtataat |
783 |
Q |
| |
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| T |
47241545 |
atactacattggttagtgaaacttaaagtgttgttttattgtttatgatttgtatggttgaagtataat |
47241477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 175; E-Value: 8e-94
Query Start/End: Original strand, 15 - 480
Target Start/End: Complemental strand, 47248690 - 47248229
Alignment:
| Q |
15 |
actatgaatgtataagattcatgccttcaattgtggctgcttctgttatctttcttgctagatttattctccggcctggagtacatccttgggtaaatat |
114 |
Q |
| |
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||||||| |||| ||| ||| ||||||| |||||||||| || ||||| |||||||| ||||||||| |||||||||||| ||||||||||||||||| |
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| T |
47248690 |
actatgagtgtacaaggttcttgccttctgttgtggctgcatcggttatatttcttgccagatttattatccggcctggagcacatccttgggtaaatac |
47248591 |
T |
|
| Q |
115 |
ttgatgttattgattttaatctatttgaat-tctaaaaaacaataatatttcaaggtacttaatgttgcgaatctatttcagacttcatccctatgtgaa |
213 |
Q |
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||| |||||| || || || ||||||| | |||| | ||||||||||| |||| ||||||| ||||||||| |||||| | ||||| |||||| |
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| T |
47248590 |
ttgttgttatggacattgatttatttgattatctagag-----taatatttcaaagtacctaatgttcagaatctattgcagactccttccctgtgtgaa |
47248496 |
T |
|
| Q |
214 |
tgtttgggttacaagtcggctgaattggaagaatgtgttatgattttacatgacttgtatttgtcaagaagggcagcatccttcaaagctgttagggaga |
313 |
Q |
| |
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|| |||||||||| |||||| | || ||||| |||||||| ||||||||||| |||||| ||||||||| ||||| |||||||||||||||| | || | |
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| T |
47248495 |
tgcttgggttacacatcggctaatttagaagattgtgttatcattttacatgatttgtatatgtcaagaaaggcaggatccttcaaagctgttcgtgaca |
47248396 |
T |
|
| Q |
314 |
aatacaagcaacaaaaggtgattgttttaacttttaacatttcatttgttatagttaattcttattaatgcaagttggttgacttgaactcattgtctgg |
413 |
Q |
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|||||||||| | ||||||||||||||||||||| ||| ||| ||||||||||||| ||||||||| |||||||| |||||||||| || || ||||| |
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| T |
47248395 |
aatacaagcagaacaaggtgattgttttaacttttgacaattcttttgttatagttatttcttattattgcaagttcattgacttgaaatcgttttctgg |
47248296 |
T |
|
| Q |
414 |
aacagttcaaatatgtggcaaacctccctagctcgccagagataccaaattattactttgaagaaga |
480 |
Q |
| |
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||||||| |||| |||||||||||| ||| |||||||||||||||||| ||||||||||| |||| |
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| T |
47248295 |
aacagttaaaatgtgtggcaaacctgccttcatcgccagagataccaaatcattactttgaaaaaga |
47248229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 15 - 480
Target Start/End: Complemental strand, 47253505 - 47253027
Alignment:
| Q |
15 |
actatgaatgtataagattcatgccttcaattgtggctgcttctgttatctttcttgctagatttattctccggcctggagtacatccttgggtaaatat |
114 |
Q |
| |
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|||||||||||||||||||| ||||||| || |||||||| |||||||| |||||||||||||| || || | |||||||||||||||| ||||||||| |
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| T |
47253505 |
actatgaatgtataagattcttgccttctatggtggctgcatctgttatatttcttgctagattcataatctgtcctggagtacatcctttggtaaatat |
47253406 |
T |
|
| Q |
115 |
ttgatgttattgattttaatctatttgaattctaaaaaacaataa-----------tatttcaaggtacttaatgttgcgaatctatttcagacttcatc |
203 |
Q |
| |
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|||||||||| | |||||| ||| | |||| |||| ||| | |||||||| | | ||||||||| ||||||||| ||||| ||||| |
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| T |
47253405 |
ttgatgttatgtactttaattgattagt-ttctgtaaaagaatgaagtaatttctgtatttcaatgcatttaatgttgagaatctattgcagacctcatc |
47253307 |
T |
|
| Q |
204 |
cctatgtgaatgtttgggttacaagtcggctgaattggaagaatgtgttatgattttacatgacttgtatttgtcaagaagggcagcatccttcaaagct |
303 |
Q |
| |
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| ||||||| ||| |||||| || ||||| ||||| ||||||||| ||||||| ||||| ||||||||| ||||||||| ||||| || |||||| |
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| T |
47253306 |
tttgagtgaatgcttgttttacaaatctgctgagttggaggaatgtgttctgattttgcatgatttgtatttggtaagaagggctgcatcattgaaagct |
47253207 |
T |
|
| Q |
304 |
gttagggagaaatacaagcaacaaaaggtgattgttttaacttttaacatttcatttgttatagttaa-----------ttcttattaatgcaagttggt |
392 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||| | ||| |||||||||||||| ||||||||| ||||||||| | |
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| T |
47253206 |
gttagggagaaatacaagcaacacaaggtgattgttttagccttt--------ctttgttatagttaatatatagctggttcttattattgcaagttgat |
47253115 |
T |
|
| Q |
393 |
tgacttgaactcattgtctggaacagttcaaatatgtggcaaacctccctagctcgccagagataccaaattattactttgaagaaga |
480 |
Q |
| |
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||||||||| | |||| || |||||||||| ||||||||||||| ||| || ||||| ||||||||| ||||||||| |||||| |
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| T |
47253114 |
tgacttgaagtgtttgtttgaaacagttcaagaatgtggcaaaccttccttcatctccagaaataccaaatcattactttgtagaaga |
47253027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 636 - 710
Target Start/End: Complemental strand, 47246351 - 47246277
Alignment:
| Q |
636 |
taatgaccaagttcctttgtgttcaagttgtcacttgttaatacaacctatgcttttggggtcttgtctttgata |
710 |
Q |
| |
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||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
47246351 |
taatgaccaagttcctttgtgcttaagttagcacttgttaatacaacctatgcttttggggtcttgtccttgata |
47246277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 708 - 783
Target Start/End: Complemental strand, 47246246 - 47246169
Alignment:
| Q |
708 |
atagggtatactacattggttagtgaaacttaaagtgttgttttattgtttatgatttg--tatggttgaagtataat |
783 |
Q |
| |
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||||||||||||||||||||||||| |||||| | |||||||| |||||||||||| || |||||| |||||||||| |
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| T |
47246246 |
atagggtatactacattggttagtggaacttataatgttgtttaattgtttatgatatgtatatggtcgaagtataat |
47246169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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