View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20180_low_4 (Length: 371)
Name: NF20180_low_4
Description: NF20180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20180_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 357
Target Start/End: Original strand, 26234019 - 26234380
Alignment:
| Q |
1 |
tctaattcctcaaatattgtgcaactttaatggatgacaaactcttcctaagagggatatttctcatgtggtaatgctaataaccataaatttaaataat |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26234019 |
tctaattcctcaaatattgtgcaaccttaatggatggcaaactcttcctaagagggatatttctcatgtggtaatgctaataaccataaatttaaataat |
26234118 |
T |
|
| Q |
101 |
tgaactattttaa--------taataatggtaattatcctttccttcnnnnnnnnnacctttttctatttgtctatatgcctaaataatctagattgtga |
192 |
Q |
| |
|
| || || ||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
26234119 |
ttaaataatttaactatttaataataatggtaattatcctttcctt----ttttttacctttttctatttgtctatgtgcctaaataatctagattgtga |
26234214 |
T |
|
| Q |
193 |
ttgtgagcacacaagcatcgttcacttagttcccttggtaacaatttgaatatttggttttaatattttggttaacggttaagagttc-aacattgaatg |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
26234215 |
ttgtgagcacacaagcatcgttcacttagttcccttggtaacaatttgaatatttggtttgaatattttggttaacggttaagagttcaaacattgaatg |
26234314 |
T |
|
| Q |
292 |
agagatggcttgaaaatatgtaagtaattgaaggcaatcctcaagatggttttgtaaagttgtgtt |
357 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
26234315 |
agagatgacttgaaaatatgtaagtaattgaaagcaatcctcaagatggttttgtgaagttgtgtt |
26234380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University