View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20181_low_2 (Length: 498)
Name: NF20181_low_2
Description: NF20181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20181_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 373; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 17 - 441
Target Start/End: Complemental strand, 40845177 - 40844753
Alignment:
| Q |
17 |
gatgaagacagtattagcaacgatttgtatgacttcttgcaggtaacttgatttgttcagtaccttattaatttgattaatcacttgaattaagtggtta |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
40845177 |
gatgaagacagtattagcaacgatttgtatgacttcttgcaggtaacttgatttgttcagtaccttattaatt-gattaatcacttgaattaagtggtta |
40845079 |
T |
|
| Q |
117 |
aacnnnnnnnataacgagaaattaagtggttaaacttgattcatagttagttagtagtacttatatttaattttaaaattcaaagacgacattacata-c |
215 |
Q |
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||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
40845078 |
aactttttttataacgagaaattaagtggttaaacttgattcatcgttagttagtagtacttatatttaattttaaaattcaaagacgacattacataac |
40844979 |
T |
|
| Q |
216 |
tatctatggttctaaactacaaattttatgttagactatgatgttgtgcaaacataagatcaacttaaatttttacaaggacaggcatttttcaaggaac |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
40844978 |
tatctatggttctaaactacaaattttatgttagactatgatgttgtgcaaacataagatcaacttaaatttttacaatgacaggcatttttcaaggaac |
40844879 |
T |
|
| Q |
316 |
accctcagttcacaaagaatgatttttatattaccggagagtcatacgctggacattacattccagcttttgcatctagagttcaccaaggaaacaaagc |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40844878 |
accctcagttcacaaagaatgatttttatattaccggagagtcatacgctggacattacattccagcttttgcatctagagttcaccaaggaaacaaagc |
40844779 |
T |
|
| Q |
416 |
aaaagaaggaattcatataaacctaa |
441 |
Q |
| |
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| T |
40844778 |
aaaagaaggaattcacataaatctaa |
40844753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 226 - 441
Target Start/End: Complemental strand, 40851058 - 40850845
Alignment:
| Q |
226 |
tctaaactacaaattttatgttagactatgatgttgtgcaaacataagatcaacttaaatttttacaaggacaggcatttttcaaggaacaccctcagtt |
325 |
Q |
| |
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|||||| | |||||||||||||| ||| | |||||||||| ||||||||| || || ||| |||| ||||||||||||||||||||||||||||||| |
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| T |
40851058 |
tctaaattgcaaattttatgttaaactctaatgttgtgcatacataagattctctaaa--tttcacaatgacaggcatttttcaaggaacaccctcagtt |
40850961 |
T |
|
| Q |
326 |
cacaaagaatgatttttatattaccggagagtcatacgctggacattacattccagcttttgcatctagagttcaccaaggaaacaaagcaaaagaagga |
425 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40850960 |
cacaaagaatgatttttatattaccggagagtcatacgctggacattacattccagcttttgcatctagagttcaccaaggaaacaaagcaaaagaagga |
40850861 |
T |
|
| Q |
426 |
attcatataaacctaa |
441 |
Q |
| |
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||||| ||||| |||| |
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| T |
40850860 |
attcacataaatctaa |
40850845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 236 - 441
Target Start/End: Complemental strand, 40840582 - 40840377
Alignment:
| Q |
236 |
aaattttatgttagactatgatgttgtgcaaacataagatcaacttaaatttttacaaggacaggcatttttcaaggaacaccctcagttcacaaagaat |
335 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||||| |||| |||||||||||||| |||| ||||||| |||||||||||||||||| | ||||| |
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| T |
40840582 |
aaattgtatgttacactatgatgttgtgcaaacataagctcaatttaaatttttacaataacagacattttttaaggaacaccctcagttcgctgagaat |
40840483 |
T |
|
| Q |
336 |
gatttttatattaccggagagtcatacgctggacattacattccagcttttgcatctagagttcaccaaggaaacaaagcaaaagaaggaattcatataa |
435 |
Q |
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|| |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40840482 |
gacttttatattaccggagagtcatacgctggacattacgttccagcttttgcatccagagttcaccaaggaaacaaagcaaaagaaggaattcatataa |
40840383 |
T |
|
| Q |
436 |
acctaa |
441 |
Q |
| |
|
| |||| |
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|
| T |
40840382 |
atctaa |
40840377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 40851221 - 40851165
Alignment:
| Q |
17 |
gatgaagacagtattagcaacgatttgtatgacttcttgcaggtaacttgatttgtt |
73 |
Q |
| |
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||||||||| || ||||||| ||| | ||||| ||||||||||||||||||| |||| |
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|
| T |
40851221 |
gatgaagacggtgttagcaatgatctatatgatttcttgcaggtaacttgatctgtt |
40851165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 439
Target Start/End: Original strand, 21150213 - 21150322
Alignment:
| Q |
330 |
aagaatgatttttatattaccggagagtcatacgctggacattacattccagcttttgcatctagagttcaccaaggaaacaaagcaaaagaaggaattc |
429 |
Q |
| |
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||||| || ||||||||||| ||||| |||||||||||||| | ||||||| ||||||| || ||| || |||||| |||| |||||||||||| |
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| T |
21150213 |
aagaacgacttttatattactggagaatcatacgctggacactttgctccagctcttgcatcacgaattcgccgaggaaataaagataaagaaggaatta |
21150312 |
T |
|
| Q |
430 |
atataaacct |
439 |
Q |
| |
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||||||||| |
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|
| T |
21150313 |
ttataaacct |
21150322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 328 - 436
Target Start/End: Complemental strand, 19576231 - 19576123
Alignment:
| Q |
328 |
caaagaatgatttttatattaccggagagtcatacgctggacattacattccagcttttgcatctagagttcaccaaggaaacaaagcaaaagaaggaat |
427 |
Q |
| |
|
|||||||||| || | |||||| || || ||||| ||||| || || ||||| ||||| |||||| | | || ||||||||| |||| || |||||||| |
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| T |
19576231 |
caaagaatgacttctttattacaggtgaatcatatgctgggcactatattcctgctttagcatctcgcatccatcaaggaaaccaagctaatgaaggaat |
19576132 |
T |
|
| Q |
428 |
tcatataaa |
436 |
Q |
| |
|
||||||||| |
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|
| T |
19576131 |
tcatataaa |
19576123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 357 - 437
Target Start/End: Original strand, 42337036 - 42337116
Alignment:
| Q |
357 |
tcatacgctggacattacattccagcttttgcatctagagttcaccaaggaaacaaagcaaaagaaggaattcatataaac |
437 |
Q |
| |
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||||| || |||||||| ||||| |||||||| || | || ||| | ||||||||||| |||||||| |||||||||||| |
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| T |
42337036 |
tcatatgccggacattatattccggcttttgctgctcgtgtccacaagggaaacaaagctaaagaagggattcatataaac |
42337116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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