View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20181_low_3 (Length: 348)
Name: NF20181_low_3
Description: NF20181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20181_low_3 |
 | |
|
| [»] scaffold0711 (1 HSPs) |
| | |
|
| [»] scaffold0056 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 130; Significance: 3e-67; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 98 - 287
Target Start/End: Complemental strand, 9869871 - 9869683
Alignment:
| Q |
98 |
tgggttgctcccattcagcgcttgtttaacgtctgaatctctacggtcaatagattgtctcctatttagtgcttcttttgagtcattatcttgacgaaat |
197 |
Q |
| |
|
||||||||||| ||||| |||||||||||||| |||||||||||||||||| | ||| ||| |||| ||||||| |||| |||||||||||||||||||| |
|
|
| T |
9869871 |
tgggttgctccaattcaacgcttgtttaacgtttgaatctctacggtcaatgg-ttgcctcatattcagtgcttattttaagtcattatcttgacgaaat |
9869773 |
T |
|
| Q |
198 |
aggttgcctcttattcaatgctatttagcgtcccgagcctgacagatatgtctaactgttgcattcagacttttgagcagctggtttttc |
287 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9869772 |
aggttgcctcttattcaacactatttagcgtccctagcctgacggatatgtctaactgttgcattcagacttttgagcagctggtttttc |
9869683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 105 - 334
Target Start/End: Complemental strand, 21843065 - 21842835
Alignment:
| Q |
105 |
ctcccattcagcgcttgtttaacgtctgaatctctacggtcaatagattgtctcctatttagtgcttcttttgagtcattatcttgacgaaataggttgc |
204 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||| ||||||||||| ||| |||||||| ||||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
21843065 |
ctccctttcagcgcttgtttaacgtctgagtctagacggtcaataggttgcctcctattcagtgcttcttttgagtcattagcttgacaaaataggttgc |
21842966 |
T |
|
| Q |
205 |
ctcttattcaatgc-tatttagcgtcccgagcctgacagatatgtctaactgttgcattcagacttttgagcagctggtttttctctccaactaccttgg |
303 |
Q |
| |
|
||| |||||| || | |||||||||||||||||||| ||||||||||| ||| || || | ||||| |||| ||||| |||||| |||||| || |
|
|
| T |
21842965 |
ctcctattcagcgcgtgtttagcgtcccgagcctgacggatatgtctaagtgtcttgtttaggcccttgagtagctaatttttttctccagctacctagg |
21842866 |
T |
|
| Q |
304 |
tcttgcatatagtctcgcaggtgcatgactt |
334 |
Q |
| |
|
|| ||||||||||||||| ||||| |||| |
|
|
| T |
21842865 |
cctgtcatatagtctcgcagatgcattactt |
21842835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 214
Target Start/End: Original strand, 21034188 - 21034225
Alignment:
| Q |
177 |
gagtcattatcttgacgaaataggttgcctcttattca |
214 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
21034188 |
gagtcattagcttgacaaaataggttgcctcttattca |
21034225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 74; Significance: 7e-34; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 105 - 257
Target Start/End: Original strand, 19054586 - 19054739
Alignment:
| Q |
105 |
ctcccattcagcgcttgtttaacgtctgaatctctacggtcaatagattgtctcctatttagtgcttcttttgagtcattatcttgacgaaataggttgc |
204 |
Q |
| |
|
||||||||||||| ||||||||||||||| || | |||||||||||||||||||||| || ||||||||| |||||||| ||| |||||||||||||| |
|
|
| T |
19054586 |
ctcccattcagcgtttgtttaacgtctgagtcccagcggtcaatagattgtctcctatccagcgcttcttttaagtcattagcttaacgaaataggttgc |
19054685 |
T |
|
| Q |
205 |
ctcttattcaatgc-tatttagcgtcccgagcctgacagatatgtctaactgtt |
257 |
Q |
| |
|
||| |||||| || | ||||||||||||||||||||| |||| ||||| |||| |
|
|
| T |
19054686 |
ctcctattcaccgcgtgtttagcgtcccgagcctgacaaatatctctaagtgtt |
19054739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 105 - 254
Target Start/End: Complemental strand, 24319155 - 24319005
Alignment:
| Q |
105 |
ctcccattcagcgcttgtttaacgtctgaatctctacggtcaatagattgtctcctatttagtgcttcttttgagtcattatcttgacgaaataggttgc |
204 |
Q |
| |
|
|||||||||| ||||| ||||| ||| || || | || |||||||| ||| |||||||| |||||||||||| | |||||| |||||||||||||||||| |
|
|
| T |
24319155 |
ctcccattcaacgcttttttaatgtccgagtcccaacagtcaataggttgcctcctattcagtgcttcttttcattcattagcttgacgaaataggttgc |
24319056 |
T |
|
| Q |
205 |
ctcttattcaatgc-tatttagcgtcccgagcctgacagatatgtctaact |
254 |
Q |
| |
|
||| |||||| || | |||||||||||||||||||||||||||||||||| |
|
|
| T |
24319055 |
ctcctattcagcgcgtgtttagcgtcccgagcctgacagatatgtctaact |
24319005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 98 - 267
Target Start/End: Complemental strand, 16783370 - 16783198
Alignment:
| Q |
98 |
tgggttgc-tcccattcagcgcttgtttaacgtctgaatctctacggtcaatagattgtctcctatttagtgcttcttttgagtcattatcttgac-gaa |
195 |
Q |
| |
|
|||||||| |||| ||||||||||||| ||||||||| || | ||||| ||||| ||| |||||||| || ||||||||| |||||||| || ||| || |
|
|
| T |
16783370 |
tgggttgcatccccttcagcgcttgttcaacgtctgagtcccgacggttaataggttgcctcctattcagcgcttcttttaagtcattagctagacaaaa |
16783271 |
T |
|
| Q |
196 |
ataggttgcctcttattcaatg-ctatttagcgtcccgagcctgacagatatgtctaactgttgcattcagac |
267 |
Q |
| |
|
|||||||| ||| ||||||||| | ||||||||||| || ||||| ||||||||||| ||||| | |||||| |
|
|
| T |
16783270 |
ataggttgtctcctattcaatgtgtgtttagcgtcccaagtctgacggatatgtctaagtgttgaactcagac |
16783198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 105 - 254
Target Start/End: Complemental strand, 25405032 - 25404883
Alignment:
| Q |
105 |
ctcccattcagcgcttgtttaacgtctgaatctctacggtcaatagattgtctcctatttagtgcttcttttgagtcattatcttgacgaaataggttgc |
204 |
Q |
| |
|
|||||||||| | ||||||||||||||||||| | | ||||||||| || ||||||| | | ||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
25405032 |
ctcccattcaacacttgtttaacgtctgaatcccgatggtcaataggtttcctcctatccact-cttcttttgagtcattaacttgacaaaataggttgc |
25404934 |
T |
|
| Q |
205 |
ctcttattcaatgc-tatttagcgtcccgagcctgacagatatgtctaact |
254 |
Q |
| |
|
|| |||| | ||| | ||||| ||||| |||||||| ||||||||||||| |
|
|
| T |
25404933 |
atcctatttagtgcgtgtttagagtccctagcctgacggatatgtctaact |
25404883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 4e-32; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 105 - 334
Target Start/End: Complemental strand, 24720929 - 24720699
Alignment:
| Q |
105 |
ctcccattcagcgcttgtttaacgtctgaatctctacggtcaatagattgtctcctatttagtgcttcttttgagtcattatcttgacgaaataggttgc |
204 |
Q |
| |
|
|||| ||| |||||||||||||||||||| || | |||||||||| ||| |||||||| | |||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
24720929 |
ctcctattaagcgcttgtttaacgtctgagtcccgacggtcaataagttgcctcctattcaacgcttcttttgagtcattagcttgacgaaataagttgc |
24720830 |
T |
|
| Q |
205 |
ctcttattcaatgc-tatttagcgtcccgagcctgacagatatgtctaactgttgcattcagacttttgagcagctggtttttctctccaactaccttgg |
303 |
Q |
| |
|
||| |||||| || | ||||||||||||| ||| || |||||||||| ||| ||||||| ||||| ||||| |||||| |||||||||| | || |
|
|
| T |
24720829 |
ctcctattcagcgcgtgtttagcgtcccgaacctaacgaatatgtctaagtgtcttgttcagacccttgagtagctgatttttccctccaactacttagg |
24720730 |
T |
|
| Q |
304 |
tcttgcatatagtctcgcaggtgcatgactt |
334 |
Q |
| |
|
|| |||||||||||||| |||||||||| |
|
|
| T |
24720729 |
cctgccatatagtctcgcaaatgcatgactt |
24720699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 113 - 254
Target Start/End: Original strand, 14998305 - 14998448
Alignment:
| Q |
113 |
cagcgcttgtttaacgtctgaatctctacggtcaatagattgtctcctatttagtgcttcttttgagtcattatcttgacg-aaataggttgcctcttat |
211 |
Q |
| |
|
||||||||||||||||||||| || | ||||||||||| |||||||||||| | ||||||||||||||||| ||||||| |||||||||||||| ||| |
|
|
| T |
14998305 |
cagcgcttgtttaacgtctgattcccgacggtcaataggttgtctcctattcaacacttcttttgagtcattagcttgacgaaaataggttgcctcctat |
14998404 |
T |
|
| Q |
212 |
tcaatgc-tatttagcgtcccgagcctgacagatatgtctaact |
254 |
Q |
| |
|
|||| || | |||||| ||||||||||||| | ||||||||||| |
|
|
| T |
14998405 |
tcaacgcgtgtttagcatcccgagcctgacggttatgtctaact |
14998448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 105 - 254
Target Start/End: Complemental strand, 26828352 - 26828200
Alignment:
| Q |
105 |
ctcccattcagcgcttgtttaacgtctgaatctctacggtcaatagattgtctcctatttagtgcttcttttgagtcattatcttgacga-aataggttg |
203 |
Q |
| |
|
|||||||||| |||||||||||||| ||| || ||||||||||| ||| |||||||||| |||||||||||| ||||| |||||||| ||||||||| |
|
|
| T |
26828352 |
ctcccattcaacgcttgtttaacgtatgagtcctgacggtcaataggttgcctcctatttaacgcttcttttgagccattagcttgacgataataggttg |
26828253 |
T |
|
| Q |
204 |
cctcttattcaatg-ctatttagcgtcccgagcctgacagata-tgtctaact |
254 |
Q |
| |
|
||| ||||||| | | ||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
26828252 |
tctcctattcaacgtgtgtttagcgtcccgagcctgacatatattgtctaact |
26828200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 257
Target Start/End: Original strand, 25232132 - 25232286
Alignment:
| Q |
105 |
ctcccattcagcgcttgtttaacgtctgaatctctacggtcaatagattgtctcctatttagtgcttcttttgagtcattatcttgacgaaa--taggtt |
202 |
Q |
| |
|
|||||||||| | |||||||||| | ||| || ||||||||||| ||| ||||||| | ||||| |||||||||||| |||| ||||| |||||| |
|
|
| T |
25232132 |
ctcccattcaacacttgtttaacatttgagtcctgacggtcaataggttgcatcctattcaacgcttcatttgagtcattagcttg-cgaaaaataggtt |
25232230 |
T |
|
| Q |
203 |
gcctcttattcaatgc-tatttagcgtcccgagcctgacagatatgtctaactgtt |
257 |
Q |
| |
|
||||| |||||| || | ||||||||||||||| ||| ||||||||||| |||| |
|
|
| T |
25232231 |
gcctcctattcagcgcgtgtttagcgtcccgagcttgaaggatatgtctaagtgtt |
25232286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 182 - 316
Target Start/End: Original strand, 21327903 - 21328038
Alignment:
| Q |
182 |
attatcttgacgaaataggttgcctcttattcaatgcta-tttagcgtcccgagcctgacagatatgtctaactgttgcattcagacttttgagcagctg |
280 |
Q |
| |
|
|||| |||||| ||||||||| |||| |||||| || | ||||||||||||| |||||| |||||||||| ||||| ||||||| |||||| || || |
|
|
| T |
21327903 |
attagcttgacaaaataggtttcctcctattcagtgtttgtttagcgtcccgaccctgacgaatatgtctaagtgttgttttcagacctttgagaagttg |
21328002 |
T |
|
| Q |
281 |
gtttttctctccaactaccttggtcttgcatatagt |
316 |
Q |
| |
|
||| | || | ||||| | ||||||||||||||| |
|
|
| T |
21328003 |
atttccccctaccactacttaggtcttgcatatagt |
21328038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 105 - 334
Target Start/End: Original strand, 19202934 - 19203164
Alignment:
| Q |
105 |
ctcccattcagcgcttgtttaacgtctgaatctctacggtcaatagattgtctcctatttagtgcttcttttgagtcattatcttgacgaaataggttgc |
204 |
Q |
| |
|
||||||||||||||||||||||||||||| || | ||||||||||| ||| |||||||| |||||||||||||||||| |||| |||||||| |||| |
|
|
| T |
19202934 |
ctcccattcagcgcttgtttaacgtctgagtcccgacggtcaataggttgcctcctattcgacgcttcttttgagtcattaacttgtcgaaatagattgc |
19203033 |
T |
|
| Q |
205 |
ctcttattcaatg-ctatttagcgtcccgagcctgacagatatgtctaactgttgcattcagacttttgagcagctggtttttctctccaactaccttgg |
303 |
Q |
| |
|
||| || ||| || | ||||| ||| |||||||||| |||||||||| |||| | ||||| | |||||| |||||||| ||||||||| ||| | |
|
|
| T |
19203034 |
ctcctactcagtgtgtggttagcttcctgagcctgacatatatgtctaagtgttaaactcagatcctggagcagacggtttttccctccaacta-cttag |
19203132 |
T |
|
| Q |
304 |
tcttg-catatagtctcgcaggtgcatgactt |
334 |
Q |
| |
|
| || ||||||||||||| ||||||||||| |
|
|
| T |
19203133 |
acatgtaatatagtctcgcacgtgcatgactt |
19203164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 98 - 215
Target Start/End: Original strand, 1586974 - 1587092
Alignment:
| Q |
98 |
tgggttgct-cccattcagcgcttgtttaacgtctgaatctctacggtcaatagattgtctcctatttagtgcttcttttgagtcattatcttgacgaaa |
196 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| | || | ||| ||||||| ||| |||||| |||| ||||||||| ||| | || ||||||| || |
|
|
| T |
1586974 |
tgggttgcttcccattcagcgcttgtttaacgtctcagtcccgacgatcaataggttgcctcctaattagagcttcttttaagttactagcttgacggaa |
1587073 |
T |
|
| Q |
197 |
taggttgcctcttattcaa |
215 |
Q |
| |
|
||||||||||| ||||||| |
|
|
| T |
1587074 |
taggttgcctcctattcaa |
1587092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 105 - 213
Target Start/End: Complemental strand, 34275120 - 34275012
Alignment:
| Q |
105 |
ctcccattcagcgcttgtttaacgtctgaatctctacggtcaatagattgtctcctatttagtgcttcttttgagtcattatcttgacgaaataggttgc |
204 |
Q |
| |
|
|||||||||||||||| |||||| ||||| || | ||||||||||| || |||||||| | ||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
34275120 |
ctcccattcagcgcttctttaacatctgagtcccgacggtcaataggctgcctcctattcaacgctacttttgagtcattagcttgacgaaataggttgc |
34275021 |
T |
|
| Q |
205 |
ctcttattc |
213 |
Q |
| |
|
||| ||||| |
|
|
| T |
34275020 |
ctcctattc |
34275012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 107 - 252
Target Start/End: Complemental strand, 12769854 - 12769709
Alignment:
| Q |
107 |
cccattcagcgcttgtttaacgtctgaatctctacggtcaatagattgtctcctatttagtgcttcttttgagtcattatcttgacgaaataggttgcct |
206 |
Q |
| |
|
|||||||| ||||| ||||||||| || || | ||| |||||| |||| |||||||| || |||||||||||||||| ||||| ||||||||||| || |
|
|
| T |
12769854 |
cccattcaacgcttctttaacgtccgagtcccgacgatcaata-attgcctcctattcagcatttcttttgagtcattagcttgatgaaataggttgtct |
12769756 |
T |
|
| Q |
207 |
cttattcaatgc-tatttagcgtcccgagcctgacagatatgtctaa |
252 |
Q |
| |
|
| ||||||| | | ||| ||||||||||||||||| |||||||||| |
|
|
| T |
12769755 |
cctattcaacacttgttttgcgtcccgagcctgacatatatgtctaa |
12769709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 109 - 254
Target Start/End: Original strand, 16227512 - 16227658
Alignment:
| Q |
109 |
cattcagcgcttgtttaacgtctgaatctctacggtcaatagattgtctcctatttagtgcttcttttgagtcattatcttgacgaaataggttgcctct |
208 |
Q |
| |
|
|||||||||| ||||||| || ||| |||| ||||||||||| ||| ||||||| | ||| |||||| ||||||| |||||||||||||||| ||| |
|
|
| T |
16227512 |
cattcagcgcatgtttaaagtgtgagtctcgacggtcaataggttgcctcctatccactgcgtctttttagtcattggcttgacgaaataggttttctcc |
16227611 |
T |
|
| Q |
209 |
tattcaatgc-tatttagcgtcccgagcctgacagatatgtctaact |
254 |
Q |
| |
|
|||||| || | ||||||||||| | | ||||| |||||||||||| |
|
|
| T |
16227612 |
tattcagcgcgtgtttagcgtcccaaacttgacaaatatgtctaact |
16227658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 150
Target Start/End: Complemental strand, 19577889 - 19577844
Alignment:
| Q |
105 |
ctcccattcagcgcttgtttaacgtctgaatctctacggtcaatag |
150 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
19577889 |
ctcccattcagcgcttgtttaacgtctgagtccagacggtcaatag |
19577844 |
T |
|
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Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 105 - 254
Target Start/End: Original strand, 28923007 - 28923157
Alignment:
| Q |
105 |
ctcccattcagcgcttgtttaacgtctgaatctctacggtcaatagattgtctcctatttagtgcttcttttgagtcattatcttgacgaaataggttgc |
204 |
Q |
| |
|
||||||||||| | ||||||||||||||| || | ||| | ||||| | | |||||||| | |||||||| |||||||| |||||||||||||||||| |
|
|
| T |
28923007 |
ctcccattcagtgtttgtttaacgtctgagtcccgacgattaataggtggcctcctattcatcacttctttttagtcattagcttgacgaaataggttgc |
28923106 |
T |
|
| Q |
205 |
ctcttattcaatgc-tatttagcgtcccgagcctgacagatatgtctaact |
254 |
Q |
| |
|
||| || || ||| | ||||||||||||||||| ||||||| |||||||| |
|
|
| T |
28923107 |
ctcctactcggtgcgtgtttagcgtcccgagccttacagataggtctaact |
28923157 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 105 - 184
Target Start/End: Original strand, 16816206 - 16816285
Alignment:
| Q |
105 |
ctcccattcagcgcttgtttaacgtctgaatctctacggtcaatagattgtctcctatttagtgcttcttttgagtcatt |
184 |
Q |
| |
|
||||||||||||||||||||||||||| | || | | | ||||||| || ||||| || |||| ||||||||||||||| |
|
|
| T |
16816206 |
ctcccattcagcgcttgtttaacgtcttagtcccgatgatcaataggtttcctcctgttcagtgattcttttgagtcatt |
16816285 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 105 - 184
Target Start/End: Original strand, 16855363 - 16855442
Alignment:
| Q |
105 |
ctcccattcagcgcttgtttaacgtctgaatctctacggtcaatagattgtctcctatttagtgcttcttttgagtcatt |
184 |
Q |
| |
|
||||||||||||||||||||||||||| | || | | | ||||||| || ||||| || |||| ||||||||||||||| |
|
|
| T |
16855363 |
ctcccattcagcgcttgtttaacgtcttagtcccgatgatcaataggtttcctcctgttcagtgattcttttgagtcatt |
16855442 |
T |
|
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Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 105 - 202
Target Start/End: Original strand, 12609382 - 12609479
Alignment:
| Q |
105 |
ctcccattcagcgcttgtttaacgtctgaatctctacggtcaatagattgtctcctatttagtgcttcttttgagtcattatcttgacgaaataggtt |
202 |
Q |
| |
|
|||||||||| |||||| ||||||||||| |||| ||||||||||| ||||||||||| || |||||||| |||||||| ||| |||||||||||| |
|
|
| T |
12609382 |
ctcccattcaacgcttggttaacgtctgagtctcgacggtcaataggttgtctcctatcaagcgcttctttcaagtcattagctttacgaaataggtt |
12609479 |
T |
|
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Target: scaffold0711 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0711
Description:
Target: scaffold0711; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 105 - 214
Target Start/End: Complemental strand, 6281 - 6172
Alignment:
| Q |
105 |
ctcccattcagcgcttgtttaacgtctgaatctct-acggtcaatagattgtctcctatttagtgcttcttttgagtcattatcttgacgaaataggttg |
203 |
Q |
| |
|
|||||||||||| ||| |||||||||| | | ||| | ||||||||| |||||||||||| | |||||||||| | |||||||||||||||||||||| |
|
|
| T |
6281 |
ctcccattcagctcttttttaacgtcttagt-tctgatggtcaataggttgtctcctattcatcacttcttttgaattattatcttgacgaaataggttg |
6183 |
T |
|
| Q |
204 |
cctcttattca |
214 |
Q |
| |
|
||| |||||| |
|
|
| T |
6182 |
tctcctattca |
6172 |
T |
|
Back To:
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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 105 - 176
Target Start/End: Original strand, 18828843 - 18828914
Alignment:
| Q |
105 |
ctcccattcagcgcttgtttaacgtctgaatctctacggtcaatagattgtctcctatttagtgcttctttt |
176 |
Q |
| |
|
||||||||||||||||||||||||||||| || | || ||||||| ||| |||||||| || ||||||||| |
|
|
| T |
18828843 |
ctcccattcagcgcttgtttaacgtctgattcccaactctcaataggttgcctcctattcagcgcttctttt |
18828914 |
T |
|
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Target: scaffold0056 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0056
Description:
Target: scaffold0056; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 334
Target Start/End: Original strand, 23767 - 23880
Alignment:
| Q |
221 |
tttagcgtcccgagcctgacagatatgtctaactgttgcattcagacttttgagcagctggtttttctctccaactaccttggtcttgcatatagtctcg |
320 |
Q |
| |
|
|||| ||||||||||| ||| ||||||||||| |||| |||| || |||||||||| |||||| |||||||||| | || || ||||||||| | |
|
|
| T |
23767 |
tttaacgtcccgagccggacggatatgtctaagtgttttattcttacccatgagcagctgatttttccctccaactacttaggcctgccatatagtcctg |
23866 |
T |
|
| Q |
321 |
caggtgcatgactt |
334 |
Q |
| |
|
||| |||||||||| |
|
|
| T |
23867 |
cagatgcatgactt |
23880 |
T |
|
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