View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20182_high_3 (Length: 345)
Name: NF20182_high_3
Description: NF20182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20182_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 16 - 331
Target Start/End: Original strand, 45755497 - 45755802
Alignment:
| Q |
16 |
atccgaaagaagaggatcaaggagatacatgtgatgtacattataaatagtactatgattggattggtttttctgcaacggggtgcacgtcccaatgcca |
115 |
Q |
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| T |
45755497 |
atccgaaagaagaggatcaaggagatacatgtgatgtacattataaatagtactatgtttggattggtttttctgcaacgggatgcacgtcccaatgcca |
45755596 |
T |
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| Q |
116 |
cgttttgtgcgaagctacaaaatggagcttcggcacagacgtgtgtttggtgtggttctaccgtggaaaaaacaggcaataacacatacacattgacact |
215 |
Q |
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| T |
45755597 |
cgttttgtgcgaagctacaaaatggagcttcagcacagacgtgtgtttggtgtggttctaccatggaaaaaacaggcaataacacatacacattggcact |
45755696 |
T |
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| Q |
216 |
tcatcaccgataataatttcaaaaaataagttaatttaaatataaatgtgtcatgttgtcgaacaccgacacttcttctatttaaaaattttgtactaca |
315 |
Q |
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| T |
45755697 |
tcatcaccgataataatttcagaaaataagttgatttaagtataaacgtgtc----------acaccgacacttcttttatttaaaaaatttgtaccgca |
45755786 |
T |
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| Q |
316 |
aagaacgtggtttgtg |
331 |
Q |
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| T |
45755787 |
aagaacgtggtttgtg |
45755802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 91 - 184
Target Start/End: Complemental strand, 29793830 - 29793739
Alignment:
| Q |
91 |
caacggggtgcacgtcccaatgccacgttttgtgcgaagctacaaaatggagcttcggcacagacgtgtgtttggtgtggttctaccgtggaaa |
184 |
Q |
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| T |
29793830 |
caaccgggtgcacgtcccaatgccacattttctgagaagctacaaaatgaaacttcagcacaga--tgtgtttggtgtgattctaccatggaaa |
29793739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 60 - 177
Target Start/End: Original strand, 41135157 - 41135274
Alignment:
| Q |
60 |
aaatagtactatgattggattggtttttctgcaacggggtgcacgtcccaatgccacgttttgtgcgaagctacaaaatggagcttcggcacagacgtgt |
159 |
Q |
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||||| || |||| |||||||| ||||| |||| |||||||||||||||||||||||||| || |||||||||||||| | |||| ||||||| |||| |
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| T |
41135157 |
aaatactagtatgtttggattgacttttccacaactgggtgcacgtcccaatgccacgttttctgagaagctacaaaatgaaacttcagcacagatgtgt |
41135256 |
T |
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| Q |
160 |
gtttggtgtggttctacc |
177 |
Q |
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| T |
41135257 |
gtttggtgtgattctacc |
41135274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 74 - 184
Target Start/End: Original strand, 41132258 - 41132368
Alignment:
| Q |
74 |
ttggattggtttttctgcaacggggtgcacgtcccaatgccacgttttgtgcgaagctacaaaatggagcttcggcacagacgtgtgtttggtgtggttc |
173 |
Q |
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|||||||| ||||| |||| |||||||||||||||||||| ||||| || |||||||||||||| | |||| ||||||| |||||||||||||| ||| |
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| T |
41132258 |
ttggattgacttttccacaactgggtgcacgtcccaatgccatgttttctgagaagctacaaaatgaaacttcagcacagatgtgtgtttggtgtgattc |
41132357 |
T |
|
| Q |
174 |
taccgtggaaa |
184 |
Q |
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|||| |||||| |
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| T |
41132358 |
taccatggaaa |
41132368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 91 - 184
Target Start/End: Original strand, 41127831 - 41127924
Alignment:
| Q |
91 |
caacggggtgcacgtcccaatgccacgttttgtgcgaagctacaaaatggagcttcggcacagacgtgtgtttggtgtggttctaccgtggaaa |
184 |
Q |
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|||| |||||||||||||||||||| ||||| || |||||||||||||| | |||| ||||||| |||||||||||||| ||||||| |||||| |
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| T |
41127831 |
caactgggtgcacgtcccaatgccatgttttctgagaagctacaaaatgaaacttcagcacagatgtgtgtttggtgtgattctaccatggaaa |
41127924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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