View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20182_high_5 (Length: 292)
Name: NF20182_high_5
Description: NF20182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20182_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 13 - 176
Target Start/End: Original strand, 45125134 - 45125305
Alignment:
| Q |
13 |
aatattttgtacaccaacattcattcaatatctcannnnnnncccctctatatcttctcattacatcatgaatctatcgcatatataacatcgatctta- |
111 |
Q |
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| T |
45125134 |
aatattttgtacaccaatattcattcaatatctcatttttttcccctctatatcttctcattacatcataaatctatcgcatatataacatcgatcttat |
45125233 |
T |
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| Q |
112 |
tatatatgtgcacacaccaaatacg-------ttctttatttctcttttacgagaggcaagtgtacgttctt |
176 |
Q |
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| T |
45125234 |
tatatatgtgcacacaccaaatacgttcttatttctttctttctcttttacgagaggcaagtgtacgttctt |
45125305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 163 - 276
Target Start/End: Original strand, 45125322 - 45125434
Alignment:
| Q |
163 |
aagtgtacgttctttttgctttggtaaaaattgaaaagaaaaatgtacctggatcggatggnnnnnnnnctccaacaagaaaaacacatggactcagcag |
262 |
Q |
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| T |
45125322 |
aagtgtacgttctttttgctttggtaaaaattgaaaagaaaaatgtacctggatcggatgg-tttttttctccaacaagaaaaacacatggactcagcag |
45125420 |
T |
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| Q |
263 |
tgctaagcattttc |
276 |
Q |
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| T |
45125421 |
tgctaagcattttc |
45125434 |
T |
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