View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20182_low_1 (Length: 602)
Name: NF20182_low_1
Description: NF20182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20182_low_1 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 409; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 1 - 457
Target Start/End: Original strand, 19856088 - 19856544
Alignment:
| Q |
1 |
atgaaaagaagcaaaacccatagcttttccaggacaaaccctcctaccagcaccaaatggagcgaacctccaatcagatcccattatactcacatcctca |
100 |
Q |
| |
|
||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||||| || |||||| ||||||||||||||||||||||||||||| |
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| T |
19856088 |
atgaacagaagccaaacccatagcttttccaggacaaaccctcctaccagctccaaatggtgctaacctcaaatcagatcccattatactcacatcctca |
19856187 |
T |
|
| Q |
101 |
ttcataaacctctctggcttaaactcttctggttcattccacaccttctcatcatgtgttatggcccacatattcaccatagcagttgtacctttcggaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19856188 |
ttcataaacctctctggcttaaactcttctggttcattccacaccttctcatcatgtgttatggcccacatattcaccatagcagttgtacctttcggaa |
19856287 |
T |
|
| Q |
201 |
tatgcttgtcaccaaccataacatcatgaacagctaaacgtgcccatgataaaagtggtcctggtggatgcactcttaatgcttccttcacaatgcattg |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
19856288 |
tatgcttgtcaccaaccataacatcatgaacagctaaacgtgcccatgataaaagtggtcctggtggatgcactcttaatgcttccttcacaatgcactg |
19856387 |
T |
|
| Q |
301 |
caagtaacacattttttgaacatcagcatcattgataactttggaatttccaacaacacggtaaatttcttcttgtacttttgcttgtatctctggatga |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
19856388 |
taagtaacacattttttgaacatcagcatcagtgataactttggaatttccaacaacacggtaaatttcttcttgtgcttttgcttgtatctctggatga |
19856487 |
T |
|
| Q |
401 |
agcaccattctagccaaaatccattctagtaatattgctactgtgtctgttcctctg |
457 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19856488 |
agcaccatcctagccagaatccattctagtaatattgctactgtgtctgttcctctg |
19856544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 553 - 583
Target Start/End: Original strand, 19856642 - 19856672
Alignment:
| Q |
553 |
tattgtattacccaaagaactgcaatcatat |
583 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
19856642 |
tattgtattacccaaagaactgcaatcatat |
19856672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 144; Significance: 2e-75; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 8748549 - 8748312
Alignment:
| Q |
1 |
atgaaaagaagcaaaacccatagcttttccaggacaaaccctcctaccagcaccaaatggagcgaacctccaatcagatcccattatactcacatcctca |
100 |
Q |
| |
|
||||| |||||| ||| |||||||||||||||||||||||||||||||||| ||||||| || ||| || |||||||||||||||||||||| |||||| |
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|
| T |
8748549 |
atgaacagaagccaaatccatagcttttccaggacaaaccctcctaccagctccaaatgt-gctaacgtcaaatcagatcccattatactcacttcctca |
8748451 |
T |
|
| Q |
101 |
ttcataaacctctctggctt--aaactcttctggttcattccacaccttctcatcatgtgttatggcccacatattcaccatagcagttgtacctttcgg |
198 |
Q |
| |
|
|||||||||||||||||||| |||||||| || ||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
8748450 |
ttcataaacctctctggcttttaaactcttttgcctcattgcaaaccttctcatcatgtgttataacccacatattcaccatagcagttgtacctttcgg |
8748351 |
T |
|
| Q |
199 |
aatatgcttgtcaccaaccataacatcatgaacagctaa |
237 |
Q |
| |
|
|| |||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
8748350 |
aacatgcttctcacctaccataacatcatgaacagctaa |
8748312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 140; Significance: 5e-73; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 35081138 - 35080901
Alignment:
| Q |
1 |
atgaaaagaagcaaaacccatagcttttccaggacaaaccctcctaccagcaccaaatggagcgaacctccaatcagatcccattatactcacatcctca |
100 |
Q |
| |
|
||||| |||||| ||| |||||||||||||||||||||||||||||||||| ||||||| || ||| || |||||||||||||||||||||| |||||| |
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|
| T |
35081138 |
atgaacagaagccaaatccatagcttttccaggacaaaccctcctaccagctccaaatgt-gctaacgtcaaatcagatcccattatactcacttcctca |
35081040 |
T |
|
| Q |
101 |
ttcataaacctctctggctt--aaactcttctggttcattccacaccttctcatcatgtgttatggcccacatattcaccatagcagttgtacctttcgg |
198 |
Q |
| |
|
||||||||||||||| |||| |||||||| || ||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
35081039 |
ttcataaacctctctcgcttttaaactcttttgcctcattgcaaaccttctcatcatgtgttataacccacatattcaccatagcagttgtacctttcgg |
35080940 |
T |
|
| Q |
199 |
aatatgcttgtcaccaaccataacatcatgaacagctaa |
237 |
Q |
| |
|
|| |||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
35080939 |
aacatgcttctcacctaccataacatcatgaacagctaa |
35080901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 83 - 240
Target Start/End: Original strand, 39427880 - 39428039
Alignment:
| Q |
83 |
attatactcacatcctcattcataaacctctctggctt--aaactcttctggttcattccacaccttctcatcatgtgttatggcccacatattcaccat |
180 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| |||||||| || ||||| || |||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
39427880 |
attatactcacttcctcattcataaacctctctggcttttaaactcttttgcctcattgcaaaccttctcatcatgtgttatagcccatatattcaccat |
39427979 |
T |
|
| Q |
181 |
agcagttgtacctttcggaatatgcttgtcaccaaccataacatcatgaacagctaaacg |
240 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||| |||||||||||||||||| ||||||| |
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|
| T |
39427980 |
agcagttgtacctttcggaacatgcttctcacctaccataacatcatgaacaactaaacg |
39428039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 137; Significance: 3e-71; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 9 - 238
Target Start/End: Original strand, 32830292 - 32830523
Alignment:
| Q |
9 |
aagcaaaacccatagcttttccaggacaaaccctcctaccagcaccaaatggagcgaacctccaatcagatcccattatactcacatcctcattcataaa |
108 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||||||||||| |||||||| || ||| || ||||| |||||||| ||||||| |||||||||||||| |
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|
| T |
32830292 |
aagccaaatccatagcttttccaggacaaaccctcctaccagctccaaatggtgctaacgtcaaatcatatcccattgtactcacttcctcattcataaa |
32830391 |
T |
|
| Q |
109 |
cctctctggctt--aaactcttctggttcattccacaccttctcatcatgtgttatggcccacatattcaccatagcagttgtacctttcggaatatgct |
206 |
Q |
| |
|
|||||||||||| |||||||| || ||||| | |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||||| |
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|
| T |
32830392 |
cctctctggcttttaaactcttttgcctcattgtaaaccttctcatcatgtgttatagcccacatattcaccataccagttgtacctttcggaacatgct |
32830491 |
T |
|
| Q |
207 |
tgtcaccaaccataacatcatgaacagctaaa |
238 |
Q |
| |
|
| ||||| |||||||||||||||||||||||| |
|
|
| T |
32830492 |
tctcacctaccataacatcatgaacagctaaa |
32830523 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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