View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20182_low_5 (Length: 310)

Name: NF20182_low_5
Description: NF20182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20182_low_5
NF20182_low_5
[»] chr2 (7 HSPs)
chr2 (1-83)||(39812195-39812276)
chr2 (5-83)||(32246579-32246658)
chr2 (5-64)||(19344236-19344294)
chr2 (5-64)||(19349094-19349152)
chr2 (1-83)||(44312831-44312908)
chr2 (1-37)||(11099144-11099180)
chr2 (1-37)||(14291331-14291367)
[»] scaffold0127 (1 HSPs)
scaffold0127 (1-83)||(34156-34237)
[»] chr8 (12 HSPs)
chr8 (1-83)||(39785031-39785112)
chr8 (1-83)||(25328485-25328566)
chr8 (5-62)||(10684476-10684533)
chr8 (13-62)||(35745208-35745257)
chr8 (1-57)||(6311121-6311175)
chr8 (1-37)||(30655484-30655520)
chr8 (1-37)||(33038024-33038060)
chr8 (1-37)||(36979221-36979257)
chr8 (1-37)||(4760293-4760329)
chr8 (1-33)||(7290134-7290166)
chr8 (5-37)||(10689364-10689396)
chr8 (5-37)||(18853390-18853422)
[»] chr1 (8 HSPs)
chr1 (1-83)||(41386545-41386626)
chr1 (1-83)||(41398034-41398115)
chr1 (1-83)||(44024080-44024161)
chr1 (1-83)||(25445297-25445380)
chr1 (1-83)||(39445294-39445377)
chr1 (1-62)||(1055219-1055279)
chr1 (13-62)||(43988685-43988734)
chr1 (1-37)||(24787585-24787621)
[»] chr4 (11 HSPs)
chr4 (1-83)||(3813818-3813901)
chr4 (1-83)||(5732460-5732539)
chr4 (5-83)||(45348029-45348107)
chr4 (5-83)||(45357508-45357586)
chr4 (1-83)||(9224614-9224696)
chr4 (1-62)||(18855544-18855604)
chr4 (1-83)||(9229401-9229482)
chr4 (1-83)||(56146919-56146993)
chr4 (1-37)||(24741784-24741820)
chr4 (1-57)||(51520280-51520334)
chr4 (2-37)||(29760486-29760521)
[»] scaffold0355 (2 HSPs)
scaffold0355 (1-83)||(9847-9928)
scaffold0355 (14-83)||(101-169)
[»] chr6 (12 HSPs)
chr6 (1-83)||(28184299-28184380)
chr6 (1-83)||(14737784-14737864)
chr6 (1-83)||(14742643-14742723)
chr6 (13-62)||(6005234-6005283)
chr6 (1-83)||(11856767-11856849)
chr6 (13-62)||(33336163-33336212)
chr6 (1-62)||(6438319-6438378)
chr6 (13-62)||(16838561-16838610)
chr6 (1-93)||(28155778-28155869)
chr6 (13-62)||(33330666-33330715)
chr6 (1-83)||(22010904-22010981)
chr6 (13-62)||(5343297-5343346)
[»] chr3 (12 HSPs)
chr3 (1-83)||(18656230-18656309)
chr3 (1-83)||(22173402-22173482)
chr3 (5-62)||(32475301-32475358)
chr3 (13-64)||(2673151-2673202)
chr3 (13-64)||(2677307-2677358)
chr3 (5-62)||(32480158-32480216)
chr3 (13-62)||(10207750-10207799)
chr3 (13-62)||(8512032-8512081)
chr3 (13-62)||(8516912-8516961)
chr3 (5-37)||(2671808-2671840)
chr3 (5-37)||(7167088-7167120)
chr3 (1-37)||(40373013-40373049)
[»] chr7 (13 HSPs)
chr7 (1-83)||(24024535-24024616)
chr7 (1-83)||(31109790-31109870)
chr7 (5-64)||(21812450-21812508)
chr7 (5-62)||(16879889-16879946)
chr7 (5-62)||(16884745-16884802)
chr7 (5-62)||(24261535-24261592)
chr7 (5-62)||(24266414-24266471)
chr7 (1-62)||(19992130-19992190)
chr7 (1-83)||(4866530-4866607)
chr7 (1-83)||(12396712-12396789)
chr7 (1-63)||(12406149-12406209)
chr7 (5-37)||(2057802-2057834)
chr7 (5-37)||(20357769-20357801)
[»] chr5 (16 HSPs)
chr5 (5-63)||(37561657-37561715)
chr5 (1-83)||(15044486-15044564)
chr5 (1-64)||(28807782-28807844)
chr5 (5-59)||(37556835-37556889)
chr5 (13-62)||(2785192-2785241)
chr5 (13-62)||(31397212-31397261)
chr5 (13-62)||(31402069-31402118)
chr5 (13-62)||(33767996-33768045)
chr5 (13-62)||(33791133-33791182)
chr5 (1-83)||(43598527-43598601)
chr5 (1-83)||(43604019-43604093)
chr5 (1-83)||(43609511-43609585)
chr5 (1-57)||(1457369-1457423)
chr5 (1-57)||(27444793-27444847)
chr5 (1-83)||(43592082-43592156)
chr5 (1-57)||(27449637-27449691)
[»] scaffold0479 (1 HSPs)
scaffold0479 (1-83)||(13143-13226)
[»] scaffold0464 (1 HSPs)
scaffold0464 (1-83)||(157-240)
[»] scaffold0197 (2 HSPs)
scaffold0197 (5-62)||(14521-14578)
scaffold0197 (13-62)||(19384-19433)
[»] scaffold0009 (1 HSPs)
scaffold0009 (5-62)||(182176-182233)
[»] scaffold0135 (1 HSPs)
scaffold0135 (1-83)||(35269-35350)
[»] scaffold0028 (1 HSPs)
scaffold0028 (13-62)||(149175-149224)
[»] scaffold0259 (1 HSPs)
scaffold0259 (14-62)||(2471-2519)
[»] scaffold0978 (1 HSPs)
scaffold0978 (5-37)||(459-491)


Alignment Details
Target: chr2 (Bit Score: 67; Significance: 9e-30; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 39812195 - 39812276
Alignment:
Q  1 cattgattaccactatcgcttgctccacacatctttggtttattctcattggtgtgaaggtttctttggaaccggattcacaa 83  Q
    ||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  39812195 cattgattatcactatcacttgctccacacatctttggtttatt-tcattggtgtgaaggtttctttggaaccggattcacaa 39812276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 5 - 83
Target Start/End: Complemental strand, 32246658 - 32246579
Alignment:
Q  5 gattaccactatcgcttgctccacacatctttggtttattctcattggtgtgaaggtttctttg--gaaccggattcacaa 83  Q
    ||||||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||  |||||||||||||||    
T  32246658 gattaccactatcacttgctccacacatcattggtttatt-tcattggtgtgaaggtttctttgtagaaccggattcacaa 32246579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 5 - 64
Target Start/End: Complemental strand, 19344294 - 19344236
Alignment:
Q  5 gattaccactatcgcttgctccacacatctttggtttattctcattggtgtgaaggtttc 64  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  19344294 gattaccactatctcttgctccacacatctttggtttatt-tcattggtgtgaaggtttc 19344236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 5 - 64
Target Start/End: Complemental strand, 19349152 - 19349094
Alignment:
Q  5 gattaccactatcgcttgctccacacatctttggtttattctcattggtgtgaaggtttc 64  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  19349152 gattaccactatctcttgctccacacatctttggtttatt-tcattggtgtgaaggtttc 19349094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 44312831 - 44312908
Alignment:
Q  1 cattgattaccactatcgcttgctccacacatctttggtttattctcattggtgtgaaggtttctttggaaccggattcacaa 83  Q
    ||||||||||||||||| ||||||||||||||| || ||||||| |||||||||||||| |   ||| |||||||||||||||    
T  44312831 cattgattaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtgaagat---ttttgaaccggattcacaa 44312908  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 11099144 - 11099180
Alignment:
Q  1 cattgattaccactatcgcttgctccacacatctttg 37  Q
    ||||||||||||||||| |||||||||||||||||||    
T  11099144 cattgattaccactatctcttgctccacacatctttg 11099180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 14291367 - 14291331
Alignment:
Q  1 cattgattaccactatcgcttgctccacacatctttg 37  Q
    ||||||||||||||||| ||||||||||||| |||||    
T  14291367 cattgattaccactatctcttgctccacacacctttg 14291331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 34156 - 34237
Alignment:
Q  1 cattgattaccactatcgcttgctccacacatctttggtttattctcattggtgtgaaggtttctttggaaccggattcacaa 83  Q
    ||||||||| ||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  34156 cattgattatcactatcacttgctccacacatcattggtttatt-tcattggtgtgaaggtttctttggaaccggattcacaa 34237  T

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Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 39785031 - 39785112
Alignment:
Q  1 cattgattaccactatcgcttgctccacacatctttggtttattctcattggtgtgaaggtttctttggaaccggattcacaa 83  Q
    ||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||    
T  39785031 cattgattatcactatcacttgctccacacatctttggtttatt-tcattggtgtgaaggtttctttggaaccagattcacaa 39785112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 25328485 - 25328566
Alignment:
Q  1 cattgattaccactatcgcttgctccacacatctttggtttattctcattggtgtgaaggtttctttggaaccggattcacaa 83  Q
    ||||||||| ||||||| |||||||| |||||| ||| |||||| |||||| |||||||||||||||||||||||||||||||    
T  25328485 cattgattatcactatcacttgctccgcacatcattgatttatt-tcattgttgtgaaggtttctttggaaccggattcacaa 25328566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 10684476 - 10684533
Alignment:
Q  5 gattaccactatcgcttgctccacacatctttggtttattctcattggtgtgaaggtt 62  Q
    ||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  10684476 gattacctctatctcttgctccacacatctttgatttattctcattggtgtgaaggtt 10684533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 35745257 - 35745208
Alignment:
Q  13 ctatcgcttgctccacacatctttggtttattctcattggtgtgaaggtt 62  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  35745257 ctatcacttgctccacacatcattggtttattctcattggtgtgaaggtt 35745208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 6311175 - 6311121
Alignment:
Q  1 cattgattaccactatcgcttgctccacacatctttggtttattctcattggtgtga 57  Q
    ||||||||||||||||| ||||||||||||||| || ||||||| ||||||||||||    
T  6311175 cattgattaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtga 6311121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 30655520 - 30655484
Alignment:
Q  1 cattgattaccactatcgcttgctccacacatctttg 37  Q
    ||||||||||||||||| |||||||||||||||||||    
T  30655520 cattgattaccactatctcttgctccacacatctttg 30655484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 33038024 - 33038060
Alignment:
Q  1 cattgattaccactatcgcttgctccacacatctttg 37  Q
    ||||||||||||||||| |||||||||||||||||||    
T  33038024 cattgattaccactatctcttgctccacacatctttg 33038060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 36979257 - 36979221
Alignment:
Q  1 cattgattaccactatcgcttgctccacacatctttg 37  Q
    ||||||||||||||||| |||||||||||||||||||    
T  36979257 cattgattaccactatctcttgctccacacatctttg 36979221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 4760293 - 4760329
Alignment:
Q  1 cattgattaccactatcgcttgctccacacatctttg 37  Q
    ||||||||||||||||| || ||||||||||||||||    
T  4760293 cattgattaccactatctctagctccacacatctttg 4760329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 7290134 - 7290166
Alignment:
Q  1 cattgattaccactatcgcttgctccacacatc 33  Q
    ||||||||||||||||| |||||||||||||||    
T  7290134 cattgattaccactatctcttgctccacacatc 7290166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 37
Target Start/End: Original strand, 10689364 - 10689396
Alignment:
Q  5 gattaccactatcgcttgctccacacatctttg 37  Q
    ||||||||||||| |||||||||||||||||||    
T  10689364 gattaccactatctcttgctccacacatctttg 10689396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 37
Target Start/End: Original strand, 18853390 - 18853422
Alignment:
Q  5 gattaccactatcgcttgctccacacatctttg 37  Q
    ||||||||||||| |||||||||||||||||||    
T  18853390 gattaccactatctcttgctccacacatctttg 18853422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 41386626 - 41386545
Alignment:
Q  1 cattgattaccactatcgcttgctccacacatctttggtttattctcattggtgtgaaggtttctttggaaccggattcacaa 83  Q
    ||||||||| ||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  41386626 cattgattatcactatcacttgctccacacatcattggtttatt-tcattggtgtgaaggtttctttggaaccggattcacaa 41386545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 41398115 - 41398034
Alignment:
Q  1 cattgattaccactatcgcttgctccacacatctttggtttattctcattggtgtgaaggtttctttggaaccggattcacaa 83  Q
    ||||||||| ||||||| ||||||||||||||  |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  41398115 cattgattatcactatcacttgctccacacataattggtttatt-tcattggtgtgaaggtttctttggaaccggattcacaa 41398034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 44024080 - 44024161
Alignment:
Q  1 cattgattaccactatcgcttgctccacacatctttggtttattctcattggtgtgaaggtttctttggaaccggattcacaa 83  Q
    ||||||||| |||||||  |||||||||||||| |||||||||| |||||||||||||||||| ||||||| |||||||||||    
T  44024080 cattgattatcactatcagttgctccacacatcattggtttatt-tcattggtgtgaaggtttatttggaatcggattcacaa 44024161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 25445297 - 25445380
Alignment:
Q  1 cattgattaccactatcgcttgctccacacatctttggtttattctcattggtgtgaaggtttctttg--gaaccggattcacaa 83  Q
    ||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||  ||||  |||||||||||||||    
T  25445297 cattgattatcactatcgcttgctccacacatcattggtttatt-tcattggtgtgaaggttcgtttgtagaaccggattcacaa 25445380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 39445377 - 39445294
Alignment:
Q  1 cattgattaccactatcgcttgctccacacatctttggtttattctcattggtgtgaaggtttctttg--gaaccggattcacaa 83  Q
    ||||||||| ||||||| ||||||||||||||| |||||||||| |||||||||||||||||  ||||  |||||||||||||||    
T  39445377 cattgattatcactatcacttgctccacacatcattggtttatt-tcattggtgtgaaggttcgtttgtagaaccggattcacaa 39445294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 1055219 - 1055279
Alignment:
Q  1 cattgattaccactatcgcttgctccacacatctttggtttattctcattggtgtgaaggtt 62  Q
    ||||||||| ||||||| ||||||||||||||| |||||||||| |||||||||||||||||    
T  1055219 cattgattatcactatcacttgctccacacatcattggtttatt-tcattggtgtgaaggtt 1055279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 43988685 - 43988734
Alignment:
Q  13 ctatcgcttgctccacacatctttggtttattctcattggtgtgaaggtt 62  Q
    ||||| ||||||||||||||| ||| |||||||||||||| |||||||||    
T  43988685 ctatcacttgctccacacatcattgatttattctcattggcgtgaaggtt 43988734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 24787585 - 24787621
Alignment:
Q  1 cattgattaccactatcgcttgctccacacatctttg 37  Q
    |||| |||||||||||| |||||||||||||||||||    
T  24787585 catttattaccactatctcttgctccacacatctttg 24787621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 3813901 - 3813818
Alignment:
Q  1 cattgattaccactatcgcttgctccacacatctttggtttattctcattggtgtgaaggtttctttg--gaaccggattcacaa 83  Q
    ||||||||||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||  |||||||||||||||    
T  3813901 cattgattaccactatcacttgctccacacatcattggtttatt-tcattggtgtgaaggtttctttgtagaaccggattcacaa 3813818  T

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Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 5732539 - 5732460
Alignment:
Q  1 cattgattaccactatcgcttgctccacacatctttggtttattctcattggtgtgaaggtttctttggaaccggattcacaa 83  Q
    ||||||||||||| ||| ||||||||||||||| |||   |||| ||||||||||||||||||||||||||||||||||||||    
T  5732539 cattgattaccaccatcacttgctccacacatcattg---tattttcattggtgtgaaggtttctttggaaccggattcacaa 5732460  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 5 - 83
Target Start/End: Original strand, 45348029 - 45348107
Alignment:
Q  5 gattaccactatcgcttgctccacacatctttggtttattctcattggtgtgaaggtttctttg--gaaccggattcacaa 83  Q
    ||||||||||||| ||||||||||||||| || ||||||| |||||||||||||||||||||||  |||||||||||||||    
T  45348029 gattaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtgaaggtttctttgtagaaccggattcacaa 45348107  T

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Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 5 - 83
Target Start/End: Original strand, 45357508 - 45357586
Alignment:
Q  5 gattaccactatcgcttgctccacacatctttggtttattctcattggtgtgaaggtttctttg--gaaccggattcacaa 83  Q
    ||||||||||||| ||||||||||||||| || ||||||| |||||||||||||||||||||||  |||||||||||||||    
T  45357508 gattaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtgaaggtttctttgtagaaccggattcacaa 45357586  T

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Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 9224614 - 9224696
Alignment:
Q  1 cattgattaccactatcgcttgctccacacatctttggtttattctcattggtgtgaagg--tttctttggaaccggattcacaa 83  Q
    ||||||||||||||||| ||||||||||||||| || ||||||| |||||||||||||||  ||| ||| |||||||||||||||    
T  9224614 cattgattaccactatctcttgctccacacatcatt-gtttatt-tcattggtgtgaaggttttttttttgaaccggattcacaa 9224696  T

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Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 18855604 - 18855544
Alignment:
Q  1 cattgattaccactatcgcttgctccacacatctttggtttattctcattggtgtgaaggtt 62  Q
    ||||||||| ||||||| ||||||||||||||| |||||||||| |||||||||||||||||    
T  18855604 cattgattatcactatcacttgctccacacatcattggtttatt-tcattggtgtgaaggtt 18855544  T

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Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 9229401 - 9229482
Alignment:
Q  1 cattgattaccactatcgcttgctccacacatctttggtttattctcattggtgtgaagg-tttctttggaaccggattcacaa 83  Q
    ||||||||||||||||| ||||||||||||||| || ||||||| ||||||||||||||| ||| |||  ||||||||||||||    
T  9229401 cattgattaccactatctcttgctccacacatcatt-gtttatt-tcattggtgtgaaggttttttttttaaccggattcacaa 9229482  T

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Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 56146919 - 56146993
Alignment:
Q  1 cattgattaccactatcgcttgctccacacatctttggtttattctcattggtgtgaaggtttctttggaaccggattcacaa 83  Q
    ||||||||||||||||| ||||||||||||||| || ||||||| |||||||||||||      |||||||||||||||||||    
T  56146919 cattgattaccactatctcttgctccacacatcatt-gtttatt-tcattggtgtgaa------tttggaaccggattcacaa 56146993  T

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Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 24741820 - 24741784
Alignment:
Q  1 cattgattaccactatcgcttgctccacacatctttg 37  Q
    ||||||||||||||||| |||||||||||||||||||    
T  24741820 cattgattaccactatctcttgctccacacatctttg 24741784  T

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Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 51520334 - 51520280
Alignment:
Q  1 cattgattaccactatcgcttgctccacacatctttggtttattctcattggtgtga 57  Q
    ||||||||||||||||| ||||||||||||||| || ||||||| ||||||||||||    
T  51520334 cattgattaccactatctcttgctccacacatcatt-gtttatt-tcattggtgtga 51520280  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 2 - 37
Target Start/End: Complemental strand, 29760521 - 29760486
Alignment:
Q  2 attgattaccactatcgcttgctccacacatctttg 37  Q
    |||||||||||||||| |||||||||||||||||||    
T  29760521 attgattaccactatctcttgctccacacatctttg 29760486  T

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Target: scaffold0355 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: scaffold0355
Description:

Target: scaffold0355; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 9847 - 9928
Alignment:
Q  1 cattgattaccactatcgcttgctccacacatctttggtttattctcattggtgtgaaggtttctttggaaccggattcacaa 83  Q
    ||||||||| ||||||| ||||||||||||||| |||||||||| |||||||||||||||||| |||| ||||||||||||||    
T  9847 cattgattatcactatcacttgctccacacatcattggtttatt-tcattggtgtgaaggtttgtttgaaaccggattcacaa 9928  T

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Target: scaffold0355; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 101 - 169
Alignment:
Q  14 tatcgcttgctccacacatctttggtttattctcattggtgtgaaggtttctttggaaccggattcacaa 83  Q
    |||| ||||||||||||||| |||||||||| | |||||||||||||||| |||| ||||||||||||||    
T  101 tatcacttgctccacacatcattggtttatt-taattggtgtgaaggtttgtttgaaaccggattcacaa 169  T

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Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 28184380 - 28184299
Alignment:
Q  1 cattgattaccactatcgcttgctccacacatctttggtttattctcattggtgtgaaggtttctttggaaccggattcacaa 83  Q
    ||||||||| ||||||| ||||||||||||||| |||||||||| |||||||||||||||||| |||| ||||||||||||||    
T  28184380 cattgattatcactatcacttgctccacacatcattggtttatt-tcattggtgtgaaggtttgtttgaaaccggattcacaa 28184299  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 14737784 - 14737864
Alignment:
Q  1 cattgattaccactatcgcttgctccacacatctttggtttattctcattggtgtgaaggtttctttggaaccggattcacaa 83  Q
    ||||||||| ||||||| ||||||||||||||| ||| |||||| |||||||||||||||||| |||| ||||||||||||||    
T  14737784 cattgattatcactatcacttgctccacacatcattg-tttatt-tcattggtgtgaaggtttatttgaaaccggattcacaa 14737864  T

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Target: chr6; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 14742643 - 14742723
Alignment:
Q  1 cattgattaccactatcgcttgctccacacatctttggtttattctcattggtgtgaaggtttctttggaaccggattcacaa 83  Q
    ||||||||| ||||||| ||||||||||||||| ||| |||||| |||||||||||||||||| |||| ||||||||||||||    
T  14742643 cattgattatcactatcacttgctccacacatcattg-tttatt-tcattggtgtgaaggtttatttgaaaccggattcacaa 14742723  T

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Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 6005283 - 6005234
Alignment:
Q  13 ctatcgcttgctccacacatctttggtttattctcattggtgtgaaggtt 62  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  6005283 ctatcacttgctccacacatcattggtttattctcattggtgtgaaggtt 6005234  T

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Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 11856849 - 11856767
Alignment:
Q  1 cattgattaccactatcgcttgctccacacatctttggtttattctcattggtgtgaagg--tttctttggaaccggattcacaa 83  Q
    ||||||||||||||||| ||||||||||||||| || ||||||| |||||||||||||||  ||| ||| |||||||||||||||    
T  11856849 cattgattaccactatctcttgctccacacatcatt-gtttatt-tcattggtgtgaaggttttttttttgaaccggattcacaa 11856767  T

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Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 33336163 - 33336212
Alignment:
Q  13 ctatcgcttgctccacacatctttggtttattctcattggtgtgaaggtt 62  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  33336163 ctatcacttgctccacacatcattggtttattctcattggtgtgaaggtt 33336212  T

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Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 6438378 - 6438319
Alignment:
Q  1 cattgattaccactatcgcttgctccacacatctttggtttattctcattggtgtgaaggtt 62  Q
    ||||||||||||||||| ||||||||||||||| || ||||||| |||||||||||||||||    
T  6438378 cattgattaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtgaaggtt 6438319  T

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Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 16838610 - 16838561
Alignment:
Q  13 ctatcgcttgctccacacatctttggtttattctcattggtgtgaaggtt 62  Q
    ||||| ||||||||||| ||| ||||||||||||||||||||||||||||    
T  16838610 ctatcacttgctccacatatcattggtttattctcattggtgtgaaggtt 16838561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 28155778 - 28155869
Alignment:
Q  1 cattgattaccactatcgcttgctccacacatctttggtttattctcattggtgtgaagg-tttctttggaaccggattcacaagatgtttggt 93  Q
    ||||||||| ||||||| ||||||||||||||| || |||||||  |||||||||||||| ||| ||| ||||||||||||||| || ||||||    
T  28155778 cattgattatcactatcacttgctccacacatcatt-gtttatt-gcattggtgtgaaggttttgtttagaaccggattcacaacatctttggt 28155869  T

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Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 33330666 - 33330715
Alignment:
Q  13 ctatcgcttgctccacacatctttggtttattctcattggtgtgaaggtt 62  Q
    ||||| ||||||||||||||| |||||||||||| |||||||||||||||    
T  33330666 ctatcacttgctccacacatcattggtttattctaattggtgtgaaggtt 33330715  T

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Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 22010904 - 22010981
Alignment:
Q  1 cattgattaccactatcgcttgctccacacatctttggtttattctcattggtgtgaaggtttctttggaaccggattcacaa 83  Q
    ||||||||||||||||| ||||||||||||||| || ||||||| |||||||||||||| |   ||| |||||||||||||||    
T  22010904 cattgattaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtgaagat---ttttgaaccggattcacaa 22010981  T

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Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 5343346 - 5343297
Alignment:
Q  13 ctatcgcttgctccacacatctttggtttattctcattggtgtgaaggtt 62  Q
    ||||| ||||||||||||||| |||  |||||||||||||||||||||||    
T  5343346 ctatcacttgctccacacatcattgacttattctcattggtgtgaaggtt 5343297  T

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Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 18656309 - 18656230
Alignment:
Q  1 cattgattaccactatcgcttgctccacacatctttggtttattctcattggtgtgaaggtttctttggaaccggattcacaa 83  Q
    ||||||||||||| ||| ||||||||||||||| |||   |||| ||||||||||||||||||||||||||||||||||||||    
T  18656309 cattgattaccaccatcacttgctccacacatcattg---tattttcattggtgtgaaggtttctttggaaccggattcacaa 18656230  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 22173402 - 22173482
Alignment:
Q  1 cattgattaccactatcgcttgctccacacatctttggtttattctcattggtgtgaaggtttctttggaaccggattcacaa 83  Q
    ||||||||||||||||| ||||||||||||||| || ||||||| |||||||||||||| ||| |||| ||||||||||||||    
T  22173402 cattgattaccactatctcttgctccacacatcatt-gtttatt-tcattggtgtgaagatttgtttgaaaccggattcacaa 22173482  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 32475358 - 32475301
Alignment:
Q  5 gattaccactatcgcttgctccacacatctttggtttattctcattggtgtgaaggtt 62  Q
    ||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  32475358 gattacctctatctcttgctccacacatctttgatttattctcattggtgtgaaggtt 32475301  T

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Target: chr3; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 2673151 - 2673202
Alignment:
Q  13 ctatcgcttgctccacacatctttggtttattctcattggtgtgaaggtttc 64  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  2673151 ctatcacttgctccacacatcattggtttattctcattggtgtgaaggtttc 2673202  T

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Target: chr3; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 2677307 - 2677358
Alignment:
Q  13 ctatcgcttgctccacacatctttggtttattctcattggtgtgaaggtttc 64  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  2677307 ctatcacttgctccacacatcattggtttattctcattggtgtgaaggtttc 2677358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 32480216 - 32480158
Alignment:
Q  5 gattaccactatcgcttgctccacacatctttgg-tttattctcattggtgtgaaggtt 62  Q
    ||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  32480216 gattacctctatctcttgctccacacatctttggatttattctcattggtgtgaaggtt 32480158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 10207799 - 10207750
Alignment:
Q  13 ctatcgcttgctccacacatctttggtttattctcattggtgtgaaggtt 62  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  10207799 ctatcacttgctccacacatcattggtttattctcattggtgtgaaggtt 10207750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 8512081 - 8512032
Alignment:
Q  13 ctatcgcttgctccacacatctttggtttattctcattggtgtgaaggtt 62  Q
    ||||| ||||||||||||||| ||| ||||||||||||||||||||||||    
T  8512081 ctatcacttgctccacacatcattgatttattctcattggtgtgaaggtt 8512032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 8516961 - 8516912
Alignment:
Q  13 ctatcgcttgctccacacatctttggtttattctcattggtgtgaaggtt 62  Q
    ||||| ||||||||||||||| ||| ||||||||||||||||||||||||    
T  8516961 ctatcacttgctccacacatcattgatttattctcattggtgtgaaggtt 8516912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 37
Target Start/End: Original strand, 2671808 - 2671840
Alignment:
Q  5 gattaccactatcgcttgctccacacatctttg 37  Q
    ||||||||||||| |||||||||||||||||||    
T  2671808 gattaccactatctcttgctccacacatctttg 2671840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 37
Target Start/End: Complemental strand, 7167120 - 7167088
Alignment:
Q  5 gattaccactatcgcttgctccacacatctttg 37  Q
    ||||||||||||| |||||||||||||||||||    
T  7167120 gattaccactatctcttgctccacacatctttg 7167088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 40373013 - 40373049
Alignment:
Q  1 cattgattaccactatcgcttgctccacacatctttg 37  Q
    ||||||||||||||||| ||||||||||||| |||||    
T  40373013 cattgattaccactatctcttgctccacacacctttg 40373049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 8e-21; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 24024535 - 24024616
Alignment:
Q  1 cattgattaccactatcgcttgctccacacatctttggtttattctcattggtgtgaagg-tttctttggaaccggattcacaa 83  Q
    ||||||||||||||||| ||||||||||||||| || ||||||| ||||||||||||||| |||||||||||||||||||||||    
T  24024535 cattgattaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtgaaggttttctttggaaccggattcacaa 24024616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 31109790 - 31109870
Alignment:
Q  1 cattgattaccactatcgcttgctccacacatctttggtttattctcattggtgtgaaggtttctttggaaccggattcacaa 83  Q
    ||||||||| ||||||| |||||| |||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  31109790 cattgattatcactatcacttgctgcacacatcattg-tttatt-tcattggtgtgaaggtttctttggaaccggattcacaa 31109870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 5 - 64
Target Start/End: Original strand, 21812450 - 21812508
Alignment:
Q  5 gattaccactatcgcttgctccacacatctttggtttattctcattggtgtgaaggtttc 64  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  21812450 gattaccactatctcttgctccacacatctttggtttatt-tcattggtgtgaaggtttc 21812508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 16879946 - 16879889
Alignment:
Q  5 gattaccactatcgcttgctccacacatctttggtttattctcattggtgtgaaggtt 62  Q
    ||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  16879946 gattacctctatctcttgctccacacatctttgatttattctcattggtgtgaaggtt 16879889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 16884802 - 16884745
Alignment:
Q  5 gattaccactatcgcttgctccacacatctttggtttattctcattggtgtgaaggtt 62  Q
    ||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  16884802 gattacctctatctcttgctccacacatctttgatttattctcattggtgtgaaggtt 16884745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 24261535 - 24261592
Alignment:
Q  5 gattaccactatcgcttgctccacacatctttggtttattctcattggtgtgaaggtt 62  Q
    ||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  24261535 gattacctctatctcttgctccacacatctttgatttattctcattggtgtgaaggtt 24261592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 24266414 - 24266471
Alignment:
Q  5 gattaccactatcgcttgctccacacatctttggtttattctcattggtgtgaaggtt 62  Q
    ||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  24266414 gattacctctatctcttgctccacacatctttgatttattctcattggtgtgaaggtt 24266471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 19992190 - 19992130
Alignment:
Q  1 cattgattaccactatcgcttgctccacacatctttggtttattctcattggtgtgaaggtt 62  Q
    ||||||||| ||||||| | |||||||||||||||||||||||| |||||||||||||||||    
T  19992190 cattgattatcactatcacctgctccacacatctttggtttatt-tcattggtgtgaaggtt 19992130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 4866607 - 4866530
Alignment:
Q  1 cattgattaccactatcgcttgctccacacatctttggtttattctcattggtgtgaaggtttctttggaaccggattcacaa 83  Q
    ||||||||||||||||| ||||||||||||||| || ||||||| ||||||||||||||||   ||| |||||||||||||||    
T  4866607 cattgattaccactatctcttgctccacacatcatt-gtttatt-tcattggtgtgaaggt---ttttgaaccggattcacaa 4866530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 12396789 - 12396712
Alignment:
Q  1 cattgattaccactatcgcttgctccacacatctttggtttattctcattggtgtgaaggtttctttggaaccggattcacaa 83  Q
    ||||||||||||||||| ||||||||||||||| || ||||||| ||||||||||||||||   ||| |||||||||||||||    
T  12396789 cattgattaccactatctcttgctccacacatcatt-gtttatt-tcattggtgtgaaggt---ttttgaaccggattcacaa 12396712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 12406209 - 12406149
Alignment:
Q  1 cattgattaccactatcgcttgctccacacatctttggtttattctcattggtgtgaaggttt 63  Q
    ||||||||||||||||| ||||||||||||||| || ||||||| ||||||||||||||||||    
T  12406209 cattgattaccactatctcttgctccacacatcatt-gtttatt-tcattggtgtgaaggttt 12406149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 37
Target Start/End: Complemental strand, 2057834 - 2057802
Alignment:
Q  5 gattaccactatcgcttgctccacacatctttg 37  Q
    ||||||||||||| |||||||||||||||||||    
T  2057834 gattaccactatctcttgctccacacatctttg 2057802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 37
Target Start/End: Original strand, 20357769 - 20357801
Alignment:
Q  5 gattaccactatcgcttgctccacacatctttg 37  Q
    ||||||||||||| |||||||||||||||||||    
T  20357769 gattaccactatctcttgctccacacatctttg 20357801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 8e-18; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 5 - 63
Target Start/End: Original strand, 37561657 - 37561715
Alignment:
Q  5 gattaccactatcgcttgctccacacatctttggtttattctcattggtgtgaaggttt 63  Q
    ||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  37561657 gattatcactatcacttgctccacacatctttggtttattatcattggtgtgaaggttt 37561715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 15044564 - 15044486
Alignment:
Q  1 cattgattaccactatcgcttgctccacacatctttggtttattctcattggtgtgaaggtttctttggaaccggattcacaa 83  Q
    ||||||||||||||||| ||||||| |||| || |||   |||| ||||||||||||||||||||||||||||||||||||||    
T  15044564 cattgattaccactatcacttgctctacacgtcattg---tatt-tcattggtgtgaaggtttctttggaaccggattcacaa 15044486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 28807782 - 28807844
Alignment:
Q  1 cattgattaccactatcgcttgctccacacatctttggtttattctcattggtgtgaaggtttc 64  Q
    ||||||||| ||||||| ||||||||||||||| |||||||||| |||||||||||||||||||    
T  28807782 cattgattatcactatcacttgctccacacatcattggtttatt-tcattggtgtgaaggtttc 28807844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 59
Target Start/End: Original strand, 37556835 - 37556889
Alignment:
Q  5 gattaccactatcgcttgctccacacatctttggtttattctcattggtgtgaag 59  Q
    ||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  37556835 gattatcactatcacttgctccacacatctttggtttattatcattggtgtgaag 37556889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 2785241 - 2785192
Alignment:
Q  13 ctatcgcttgctccacacatctttggtttattctcattggtgtgaaggtt 62  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  2785241 ctatcacttgctccacacatcattggtttattctcattggtgtgaaggtt 2785192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 31397212 - 31397261
Alignment:
Q  13 ctatcgcttgctccacacatctttggtttattctcattggtgtgaaggtt 62  Q
    ||||| ||||||||||||||| ||| ||||||||||||||||||||||||    
T  31397212 ctatcacttgctccacacatcattgatttattctcattggtgtgaaggtt 31397261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 31402069 - 31402118
Alignment:
Q  13 ctatcgcttgctccacacatctttggtttattctcattggtgtgaaggtt 62  Q
    ||||| ||||||||||||||| ||| ||||||||||||||||||||||||    
T  31402069 ctatcacttgctccacacatcattgatttattctcattggtgtgaaggtt 31402118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 33768045 - 33767996
Alignment:
Q  13 ctatcgcttgctccacacatctttggtttattctcattggtgtgaaggtt 62  Q
    ||||| ||||||||||||||| ||||||||||||||||| ||||||||||    
T  33768045 ctatcacttgctccacacatcattggtttattctcattgatgtgaaggtt 33767996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 33791182 - 33791133
Alignment:
Q  13 ctatcgcttgctccacacatctttggtttattctcattggtgtgaaggtt 62  Q
    ||||| ||||||||||||||| ||||||||||||||||| ||||||||||    
T  33791182 ctatcacttgctccacacatcattggtttattctcattgatgtgaaggtt 33791133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 43598601 - 43598527
Alignment:
Q  1 cattgattaccactatcgcttgctccacacatctttggtttattctcattggtgtgaaggtttctttggaaccggattcacaa 83  Q
    ||||||||||||||||| ||||||||||||||| || ||||||| ||||||||||||      ||||||||||||||||||||    
T  43598601 cattgattaccactatctcttgctccacacatcatt-gtttatt-tcattggtgtga------ctttggaaccggattcacaa 43598527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 43604093 - 43604019
Alignment:
Q  1 cattgattaccactatcgcttgctccacacatctttggtttattctcattggtgtgaaggtttctttggaaccggattcacaa 83  Q
    ||||||||||||||||| ||||||||||||||| || ||||||| ||||||||||||      ||||||||||||||||||||    
T  43604093 cattgattaccactatctcttgctccacacatcatt-gtttatt-tcattggtgtga------ctttggaaccggattcacaa 43604019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 43609585 - 43609511
Alignment:
Q  1 cattgattaccactatcgcttgctccacacatctttggtttattctcattggtgtgaaggtttctttggaaccggattcacaa 83  Q
    ||||||||||||||||| ||||||||||||||| || ||||||| ||||||||||||      ||||||||||||||||||||    
T  43609585 cattgattaccactatctcttgctccacacatcatt-gtttatt-tcattggtgtga------ctttggaaccggattcacaa 43609511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 1457369 - 1457423
Alignment:
Q  1 cattgattaccactatcgcttgctccacacatctttggtttattctcattggtgtga 57  Q
    ||||||||||||||||| ||||||||||||||| || ||||||| ||||||||||||    
T  1457369 cattgattaccactatctcttgctccacacatcatt-gtttatt-tcattggtgtga 1457423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 27444847 - 27444793
Alignment:
Q  1 cattgattaccactatcgcttgctccacacatctttggtttattctcattggtgtga 57  Q
    ||||||||||||||||| ||||||||||||||| || ||||||| ||||||||||||    
T  27444847 cattgattaccactatctcttgctccacacatcatt-gtttatt-tcattggtgtga 27444793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 43592156 - 43592082
Alignment:
Q  1 cattgattaccactatcgcttgctccacacatctttggtttattctcattggtgtgaaggtttctttggaaccggattcacaa 83  Q
    ||||||||||||||||| ||||||||||||||| || ||||||| |||||| |||||      ||||||||||||||||||||    
T  43592156 cattgattaccactatctcttgctccacacatcatt-gtttatt-tcattgatgtga------ctttggaaccggattcacaa 43592082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 27449691 - 27449637
Alignment:
Q  1 cattgattaccactatcgcttgctccacacatctttggtttattctcattggtgtga 57  Q
    ||||||||||||||||| ||||||||||| ||| || ||||||| ||||||||||||    
T  27449691 cattgattaccactatctcttgctccacatatcatt-gtttatt-tcattggtgtga 27449637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0479 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 13226 - 13143
Alignment:
Q  1 cattgattaccactatcgcttgctccacacatctttggtttattctcattggtgtgaaggtttctttg--gaaccggattcacaa 83  Q
    ||||||||| ||||||| ||||||||||| |||||||||||||| |||||||||||||||||  ||||  |||||||||||||||    
T  13226 cattgattatcactatcacttgctccacatatctttggtttatt-tcattggtgtgaaggttcgtttgtagaaccggattcacaa 13143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 240 - 157
Alignment:
Q  1 cattgattaccactatcgcttgctccacacatctttggtttattctcattggtgtgaaggtttctttg--gaaccggattcacaa 83  Q
    ||||||||| ||| ||| |||||||||||||||||||||||||| |||||||||||||||||  ||||  |||||||||||||||    
T  240 cattgattatcaccatcacttgctccacacatctttggtttatt-tcattggtgtgaaggttcgtttgtagaaccggattcacaa 157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 14521 - 14578
Alignment:
Q  5 gattaccactatcgcttgctccacacatctttggtttattctcattggtgtgaaggtt 62  Q
    ||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  14521 gattacctctatctcttgctccacacatctttgatttattctcattggtgtgaaggtt 14578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 19384 - 19433
Alignment:
Q  13 ctatcgcttgctccacacatctttggtttattctcattggtgtgaaggtt 62  Q
    ||||| ||||||||||||||| ||| ||||||||||||||||||||||||    
T  19384 ctatcacttgctccacacatcattgatttattctcattggtgtgaaggtt 19433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 182176 - 182233
Alignment:
Q  5 gattaccactatcgcttgctccacacatctttggtttattctcattggtgtgaaggtt 62  Q
    ||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  182176 gattacctctatctcttgctccacacatctttgatttattctcattggtgtgaaggtt 182233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 35269 - 35350
Alignment:
Q  1 cattgattaccactatcgcttgctccacacatctttggtttattctcattggtgtgaagg-tttctttggaaccggattcacaa 83  Q
    ||||||||||||||||| ||||||||||||||| || ||||||| ||||||||||||||| ||| |||  ||||||||||||||    
T  35269 cattgattaccactatctcttgctccacacatcatt-gtttatt-tcattggtgtgaaggttttttttttaaccggattcacaa 35350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 149175 - 149224
Alignment:
Q  13 ctatcgcttgctccacacatctttggtttattctcattggtgtgaaggtt 62  Q
    ||||| ||||||||||||||| ||| ||||||||||||||||||||||||    
T  149175 ctatcacttgctccacacatcattgatttattctcattggtgtgaaggtt 149224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 2471 - 2519
Alignment:
Q  14 tatcgcttgctccacacatctttggtttattctcattggtgtgaaggtt 62  Q
    |||| ||||||||||||||| ||| ||||||||||||||||||||||||    
T  2471 tatcacttgctccacacatcattgatttattctcattggtgtgaaggtt 2519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0978 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0978
Description:

Target: scaffold0978; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 37
Target Start/End: Original strand, 459 - 491
Alignment:
Q  5 gattaccactatcgcttgctccacacatctttg 37  Q
    ||||||||||||| |||||||||||||||||||    
T  459 gattaccactatctcttgctccacacatctttg 491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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