View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20183_high_1 (Length: 790)

Name: NF20183_high_1
Description: NF20183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20183_high_1
NF20183_high_1
[»] chr2 (7 HSPs)
chr2 (87-774)||(36590257-36590930)
chr2 (1-110)||(36591027-36591136)
chr2 (98-257)||(40569743-40569906)
chr2 (101-253)||(41298104-41298257)
chr2 (103-249)||(13790020-13790171)
chr2 (91-150)||(2050584-2050643)
chr2 (259-316)||(25455032-25455089)
[»] chr1 (5 HSPs)
chr1 (103-253)||(37261550-37261704)
chr1 (95-150)||(48462255-48462310)
chr1 (98-144)||(9011462-9011508)
chr1 (193-251)||(46960454-46960512)
chr1 (193-257)||(37336626-37336690)
[»] chr7 (3 HSPs)
chr7 (197-257)||(45440736-45440796)
chr7 (263-316)||(38528715-38528768)
chr7 (261-317)||(38075994-38076050)
[»] chr5 (4 HSPs)
chr5 (259-317)||(15200551-15200609)
chr5 (259-316)||(36978177-36978234)
chr5 (259-316)||(43346901-43346958)
chr5 (90-144)||(6930359-6930413)
[»] scaffold0702 (1 HSPs)
scaffold0702 (196-256)||(3748-3808)
[»] chr8 (3 HSPs)
chr8 (83-150)||(16313801-16313869)
chr8 (160-254)||(43872151-43872249)
chr8 (98-139)||(41432464-41432505)
[»] scaffold0662 (1 HSPs)
scaffold0662 (196-251)||(4294-4349)
[»] chr4 (1 HSPs)
chr4 (193-243)||(30790375-30790425)
[»] chr6 (1 HSPs)
chr6 (160-251)||(8314681-8314776)
[»] chr3 (1 HSPs)
chr3 (98-143)||(26849446-26849491)


Alignment Details
Target: chr2 (Bit Score: 519; Significance: 0; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 87 - 774
Target Start/End: Complemental strand, 36590930 - 36590257
Alignment:
87 aaaatataagcgtgtatttgttttaagtttatcaattttatttttatgaataatattcgttgga-tatacatattgtaaattttattctatatttagaaa 185  Q
    |||||||||| |||  |||||||||||||||  || |||||||||| |||||| |||||||||| |||| ||||||||||||||||||||||||||||||    
36590930 aaaatataagagtgagtttgttttaagtttactaaatttatttttaggaataacattcgttggaatatatatattgtaaattttattctatatttagaaa 36590831  T
186 attgatgttggttaacattatattattccaagtaaacttaaaaatagagattataatagataattatacatgcacatatatatttttatgattttatttt 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
36590830 attgatgttggttaacattatattattccaagtaaacttaaaaatagagattataatagataattatacatgcacatgtatatttttatgattttatttt 36590731  T
286 cagaaatatgtaaatataatttgaaacaaacgtcaaaattgagtaagaaaatcattaattacactattttagtagttaatgtctaaatatgatcattatc 385  Q
    || |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||               ||||||||||||||||||||||||    
36590730 caaaaatctggaaatataatttgaaacaaacgtcaaaattgagtaagaaaatcattaattag--------------taatgtctaaatatgatcattatc 36590645  T
386 gatcacaaccgtaatatgatc--attaataaggttgtccacttcttcaaaaagagnnnnnnnngttgtctaaatcaatattgcattggttgtcttgcgaa 483  Q
    |||||||||||||||||||||  ||||||||||||||| ||||||||||||||||        |||||||||||||||||||||||||||||||||||||    
36590644 gatcacaaccgtaatatgatctcattaataaggttgtctacttcttcaaaaagagaaaaaaaagttgtctaaatcaatattgcattggttgtcttgcgaa 36590545  T
484 aatctttaataattatactaaaataattaatgtctaaaataggttctttttgcattggttgtgaacttgtgttctctctatgttgtgggaataaatacca 583  Q
    ||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
36590544 aatctttaat---tatactaaaataattaatgtctaaaataggttctttttgcattggttgtgaacttgtgttctctctatgttgtgggaataaatacca 36590448  T
584 cttcaactcttcaaaaacgaacaaacaacatatgccaaagttcgaaagctatatgttttttgctgcaggccaaaataaatccaatttcaactgagtcttc 683  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
36590447 cttcaactcttcaaaaacgaacaaacaacatatgccaaagttcgaaagctatatgttttttgctgcaggccaaaataaatccaatttcaaccgagtcttc 36590348  T
684 ctagtcgtttaatcctagactacagctctacaattatgatcaactttgtcctcacctaaaataaattgtacgcgtttaattcctatgcaac 774  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
36590347 ctagtcgtttaatcctagattacagctctacaattatgatcaactttgtcctcacctaaaataaattgtacgcgtttaattcctatgcaac 36590257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 36591136 - 36591027
Alignment:
1 tgcaatgtttgattgtttgtccctttttctctcttcagataacacattgttttgtgcgcaaaccaaagatctttctcgttacatttaaaatataagcgtg 100  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
36591136 tgcagtgtttgattgtttgtccctttttctctcttcagatcacacattgttttgtgcgcaaaccaaagatctttctcgttacatttaaaatataagggtg 36591037  T
101 tatttgtttt 110  Q
    | ||| ||||    
36591036 tgtttttttt 36591027  T

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Target: chr2; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 98 - 257
Target Start/End: Original strand, 40569743 - 40569906
Alignment:
98 gtgtatttgttttaagtttatcaattttatttttatgaataatattcgttggatatacatat-tgtaaattttattcta---tatttagaaaattgatgt 193  Q
    |||| ||||||| ||||||| ||| ||||||| || |||||| |||| ||||| ||| |||| |||||||||||||| |   |||||||||||  |||||    
40569743 gtgtgtttgtttcaagtttaccaaatttatttctaggaataacattccttgga-atatatatatgtaaattttattccaaggtatttagaaaaaagatgt 40569841  T
194 t-ggttaacattatattattccaagtaaacttaaaaatagagattataatagataattatacatg 257  Q
    | ||||||||||||| | ||||||| || || |||||||| ||||||||||| ||||||||||||    
40569842 ttggttaacattataatgttccaaggaacctcaaaaatagggattataataggtaattatacatg 40569906  T

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Target: chr2; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 101 - 253
Target Start/End: Complemental strand, 41298257 - 41298104
Alignment:
101 tatttgttttaagtttatcaattttatttttatgaataatattcgttgga-tatacatattgtaaattttattctatatttagaaaattgatgttggtt- 198  Q
    |||||||||||||| |||||| |||||||||| |||||| |||| ||||| |||| | || |  ||||||||| | |||||| ||||  |||||| |||     
41298257 tatttgttttaagtatatcaaatttatttttaggaataacattcattggaatataaagat-gagaattttattttgtatttaaaaaaaagatgtttgttt 41298159  T
199 aacattatattattccaagtaaacttaaaaatagagattataatagataattata 253  Q
    ||||||||| ||||||||| || | ||| ||||||||||||||||| ||||||||    
41298158 aacattataatattccaaggaaccataagaatagagattataataggtaattata 41298104  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 249
Target Start/End: Original strand, 13790020 - 13790171
Alignment:
103 tttgttttaagtttatcaattttatttttatgaataatattcgttggatatacatat-tgtaaattttattcta---tatttagaaaatt-gatgttgg- 196  Q
    ||||||| ||||||||||| ||||||| || |||||| |||| ||| | ||| |||  ||||||||||||||||   |||||| ||||   |||||| |     
13790020 tttgtttcaagtttatcaaatttatttgtaggaataacattccttgaa-atatatagatgtaaattttattctaaggtatttaaaaaaaaagatgtttga 13790118  T
197 ttaacattatattattccaagtaaacttaaaaatagagattataatagataat 249  Q
    ||||||||||| ||||||||| || ||||||||||| ||||||||||| ||||    
13790119 ttaacattataatattccaaggaaccttaaaaatagggattataataggtaat 13790171  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 150
Target Start/End: Original strand, 2050584 - 2050643
Alignment:
91 tataagcgtgtatttgttttaagtttatcaattttatttttatgaataatattcgttgga 150  Q
    |||||| |||| ||||||| ||||||||||| |||||||||| |||||| |||| |||||    
2050584 tataagggtgtgtttgtttcaagtttatcaaatttatttttaggaataacattccttgga 2050643  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 259 - 316
Target Start/End: Original strand, 25455032 - 25455089
Alignment:
259 acatatatatttttatgattttattttcagaaatatgtaaatataatttgaaacaaac 316  Q
    |||||| |||||||||||||||||| |||| ||| |  |||||||| |||||||||||    
25455032 acatatgtatttttatgattttattctcaggaatctacaaatataacttgaaacaaac 25455089  T

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Target: chr1 (Bit Score: 46; Significance: 8e-17; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 103 - 253
Target Start/End: Original strand, 37261550 - 37261704
Alignment:
103 tttgttttaagtttatcaattttatttttatgaataatattcgttgg-atatacatattgtaaattttattct---atatttagaaaattgatg-ttggt 197  Q
    ||||||| ||||||||||| ||||||||||||| ||| |||| |||| ||||| ||| ||| |||||||||||   ||||||||||||  |||| |||||    
37261550 tttgtttcaagtttatcaaatttatttttatgattaacattcattggaatataaata-tgtgaattttattcttagatatttagaaaaaagatgtttggt 37261648  T
198 taacattatattattccaagtaaacttaaaaatagagattataatagataattata 253  Q
    ||| |||||| ||||||||  ||  |||||||||  ||||||||||| ||||||||    
37261649 taatattataatattccaaagaacgttaaaaatatggattataataggtaattata 37261704  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 95 - 150
Target Start/End: Original strand, 48462255 - 48462310
Alignment:
95 agcgtgtatttgttttaagtttatcaattttatttttatgaataatattcgttgga 150  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||    
48462255 agcgtgtatttgttttaagtttatcaaatttatttttatgaataacattctttgga 48462310  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 144
Target Start/End: Complemental strand, 9011508 - 9011462
Alignment:
98 gtgtatttgttttaagtttatcaattttatttttatgaataatattc 144  Q
    |||| ||||||||||||||||||| |||||||||| |||||||||||    
9011508 gtgtgtttgttttaagtttatcaaatttatttttaggaataatattc 9011462  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 193 - 251
Target Start/End: Original strand, 46960454 - 46960512
Alignment:
193 ttggttaacattatattattccaagtaaacttaaaaatagagattataatagataatta 251  Q
    ||||||||||||||| ||||||||  || ||||||||||||| ||||||||| ||||||    
46960454 ttggttaacattataatattccaatgaaccttaaaaatagagtttataataggtaatta 46960512  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 193 - 257
Target Start/End: Complemental strand, 37336690 - 37336626
Alignment:
193 ttggttaacattatattattccaagtaaacttaaaaatagagattataatagataattatacatg 257  Q
    |||||||||||| || ||||  ||| || | ||||||||||||||||||||| ||||||||||||    
37336690 ttggttaacattttaatattttaagaaaccataaaaatagagattataataggtaattatacatg 37336626  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 197 - 257
Target Start/End: Original strand, 45440736 - 45440796
Alignment:
197 ttaacattatattattccaagtaaacttaaaaatagagattataatagataattatacatg 257  Q
    ||||||||||| |||||||||||| ||||||| ||| ||||||||||| ||||||||||||    
45440736 ttaacattataatattccaagtaaccttaaaactagggattataataggtaattatacatg 45440796  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 263 - 316
Target Start/End: Complemental strand, 38528768 - 38528715
Alignment:
263 atatatttttatgattttattttcagaaatatgtaaatataatttgaaacaaac 316  Q
    |||||| |||||||||||||||||| |||||| ||||||||| |||||||||||    
38528768 atatatatttatgattttattttcaaaaatatataaatataacttgaaacaaac 38528715  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 261 - 317
Target Start/End: Complemental strand, 38076050 - 38075994
Alignment:
261 atatatatttttatgattttattttcagaaatatgtaaatataatttgaaacaaacg 317  Q
    |||||||||| ||| |||||||||||| |||| | |||| |||||||||||||||||    
38076050 atatatatttctattattttattttcaaaaatttttaaaaataatttgaaacaaacg 38075994  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 259 - 317
Target Start/End: Complemental strand, 15200609 - 15200551
Alignment:
259 acatatatatttttatgattttattttcagaaatatgtaaatataatttgaaacaaacg 317  Q
    |||||||||||| ||| |||||||||||| |||| | ||||||||| ||||||||||||    
15200609 acatatatatttatatcattttattttcaaaaatctataaatataacttgaaacaaacg 15200551  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 259 - 316
Target Start/End: Complemental strand, 36978234 - 36978177
Alignment:
259 acatatatatttttatgattttattttcagaaatatgtaaatataatttgaaacaaac 316  Q
    |||||||||||| ||| |||||||||||||||||||   ||| |||||||||||||||    
36978234 acatatatatttctatcattttattttcagaaatatacgaatgtaatttgaaacaaac 36978177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 259 - 316
Target Start/End: Complemental strand, 43346958 - 43346901
Alignment:
259 acatatatatttttatgattttattttcagaaatatgtaaatataatttgaaacaaac 316  Q
    |||||| ||||||||||||||||||||||| ||| |  |||||||| |||||||||||    
43346958 acatatgtatttttatgattttattttcaggaatctacaaatataacttgaaacaaac 43346901  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 90 - 144
Target Start/End: Original strand, 6930359 - 6930413
Alignment:
90 atataagcgtgtatttgttttaagtttatcaattttatttttatgaataatattc 144  Q
    ||||||| |||| ||||||||||||||||||| ||||||  ||||||||| ||||    
6930359 atataagggtgtgtttgttttaagtttatcaaatttattcatatgaataacattc 6930413  T

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Target: scaffold0702 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0702
Description:

Target: scaffold0702; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 196 - 256
Target Start/End: Complemental strand, 3808 - 3748
Alignment:
196 gttaacattatattattccaagtaaacttaaaaatagagattataatagataattatacat 256  Q
    |||||||||||| ||||||||| || ||||||||||| || |||||||| |||||| ||||    
3808 gttaacattataatattccaaggaaccttaaaaatagggaatataataggtaattacacat 3748  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 150
Target Start/End: Complemental strand, 16313869 - 16313801
Alignment:
83 atttaaaatat-aagcgtgtatttgttttaagtttatcaattttatttttatgaataatattcgttgga 150  Q
    ||||||||||| ||| |||| ||||||| ||||||||||| |||||||||| |||||| |||| |||||    
16313869 atttaaaatattaagggtgtgtttgtttcaagtttatcaaatttatttttaggaataacattccttgga 16313801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 254
Target Start/End: Complemental strand, 43872249 - 43872151
Alignment:
160 tgtaaattttattcta---tatttagaaaattgatgtt-ggttaacattatattattccaagtaaacttaaaaatagagattataatagataattatac 254  Q
    |||||||||||||| |   |||||||||||  |||||| ||||||||||||| | || |||| || || |||||||| ||||||||||| |||||||||    
43872249 tgtaaattttattccaaggtatttagaaaaaagatgtttggttaacattataatgtttcaaggaacctcaaaaatagggattataataggtaattatac 43872151  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 139
Target Start/End: Original strand, 41432464 - 41432505
Alignment:
98 gtgtatttgttttaagtttatcaattttatttttatgaataa 139  Q
    |||| ||||||||||||||||||| |||||||||| ||||||    
41432464 gtgtgtttgttttaagtttatcaaatttatttttaggaataa 41432505  T

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Target: scaffold0662 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0662
Description:

Target: scaffold0662; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 251
Target Start/End: Original strand, 4294 - 4349
Alignment:
196 gttaacattatattattccaagtaaacttaaaaatagagattataatagataatta 251  Q
    |||||||||||| ||||||||| || ||||||||||| || |||||||| ||||||    
4294 gttaacattataatattccaaggaaccttaaaaatagggaatataataggtaatta 4349  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 193 - 243
Target Start/End: Original strand, 30790375 - 30790425
Alignment:
193 ttggttaacattatattattccaagtaaacttaaaaatagagattataata 243  Q
    ||||||||||||||| ||||||||| || ||||||||||||  ||||||||    
30790375 ttggttaacattataatattccaaggaaccttaaaaatagaatttataata 30790425  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 251
Target Start/End: Original strand, 8314681 - 8314776
Alignment:
160 tgtaaattttattcta---tatttagaaaattgatgttg-gttaacattatattattccaagtaaacttaaaaatagagattataatagataatta 251  Q
    ||||||||||||||||   |||||||||||   |||||  |||||||||||| || | |||| || ||||||||||| ||||||||||| ||||||    
8314681 tgtaaattttattctaagatatttagaaaaaaaatgtttagttaacattataataattcaaggaaccttaaaaatagggattataataggtaatta 8314776  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 143
Target Start/End: Complemental strand, 26849491 - 26849446
Alignment:
98 gtgtatttgttttaagtttatcaattttatttttatgaataatatt 143  Q
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26849491 gtgtgtttgttttaagtttaccaaatttatttttaggaataatatt 26849446  T

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