View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20183_high_16 (Length: 367)

Name: NF20183_high_16
Description: NF20183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20183_high_16
NF20183_high_16
[»] chr2 (11 HSPs)
chr2 (38-212)||(41670910-41671082)
chr2 (280-349)||(36890519-36890588)
chr2 (295-349)||(28974393-28974447)
chr2 (295-349)||(271514-271568)
chr2 (280-349)||(25602370-25602439)
chr2 (280-339)||(17367174-17367232)
chr2 (297-349)||(27262149-27262201)
chr2 (295-349)||(4447981-4448035)
chr2 (295-349)||(22579711-22579765)
chr2 (295-349)||(25875770-25875823)
chr2 (295-347)||(24571141-24571193)
[»] chr7 (16 HSPs)
chr7 (280-349)||(26069441-26069510)
chr7 (280-349)||(26070099-26070168)
chr7 (280-349)||(26093886-26093955)
chr7 (280-349)||(143984-144052)
chr7 (280-349)||(13862766-13862835)
chr7 (280-349)||(15822266-15822334)
chr7 (280-349)||(47290127-47290196)
chr7 (295-349)||(12759333-12759387)
chr7 (280-349)||(12369673-12369742)
chr7 (295-349)||(11287761-11287815)
chr7 (295-349)||(45452016-45452070)
chr7 (295-349)||(44865575-44865628)
chr7 (295-349)||(12247968-12248022)
chr7 (296-349)||(3895369-3895421)
chr7 (295-349)||(16569854-16569908)
chr7 (295-349)||(16595754-16595808)
[»] scaffold0044 (1 HSPs)
scaffold0044 (280-349)||(38643-38712)
[»] chr6 (12 HSPs)
chr6 (280-349)||(18777474-18777543)
chr6 (280-349)||(32899135-32899204)
chr6 (280-349)||(16106861-16106930)
chr6 (280-349)||(18432987-18433056)
chr6 (280-349)||(16086362-16086431)
chr6 (280-349)||(25640395-25640463)
chr6 (295-349)||(18399283-18399337)
chr6 (295-335)||(31628549-31628589)
chr6 (295-349)||(13014557-13014610)
chr6 (295-349)||(15079559-15079613)
chr6 (295-349)||(22441278-22441331)
chr6 (296-349)||(18570623-18570675)
[»] chr4 (13 HSPs)
chr4 (280-349)||(21959297-21959366)
chr4 (280-349)||(30232329-30232398)
chr4 (280-349)||(819764-819833)
chr4 (280-349)||(20813380-20813449)
chr4 (280-349)||(34395602-34395671)
chr4 (280-349)||(45458689-45458758)
chr4 (280-349)||(44056259-44056328)
chr4 (280-349)||(12837035-12837103)
chr4 (296-349)||(23269783-23269836)
chr4 (280-339)||(8872307-8872366)
chr4 (299-349)||(30458248-30458297)
chr4 (295-349)||(16732513-16732567)
chr4 (295-349)||(52265356-52265410)
[»] chr3 (28 HSPs)
chr3 (280-349)||(6146602-6146671)
chr3 (280-349)||(17100997-17101066)
chr3 (280-349)||(17101682-17101751)
chr3 (280-349)||(54424357-54424426)
chr3 (280-342)||(13835973-13836035)
chr3 (280-349)||(6154164-6154233)
chr3 (280-349)||(30207563-30207632)
chr3 (295-349)||(50111899-50111953)
chr3 (280-349)||(317344-317412)
chr3 (280-349)||(34439176-34439244)
chr3 (295-349)||(14298766-14298820)
chr3 (295-349)||(14304393-14304447)
chr3 (280-349)||(38528072-38528140)
chr3 (295-349)||(14527928-14527982)
chr3 (295-349)||(35124040-35124094)
chr3 (296-349)||(12349388-12349441)
chr3 (280-349)||(16995895-16995963)
chr3 (280-349)||(22144106-22144174)
chr3 (295-349)||(17522738-17522792)
chr3 (295-349)||(40939471-40939525)
chr3 (295-349)||(55440706-55440760)
chr3 (297-349)||(13817855-13817906)
chr3 (295-349)||(3578433-3578487)
chr3 (295-349)||(11060855-11060909)
chr3 (295-349)||(16181796-16181849)
chr3 (295-349)||(14295783-14295837)
chr3 (295-349)||(14301410-14301464)
chr3 (297-349)||(19570542-19570593)
[»] scaffold0359 (2 HSPs)
scaffold0359 (280-346)||(1663-1729)
scaffold0359 (297-349)||(11504-11555)
[»] scaffold0068 (2 HSPs)
scaffold0068 (280-349)||(48489-48557)
scaffold0068 (280-349)||(61937-62005)
[»] scaffold0037 (1 HSPs)
scaffold0037 (280-349)||(24561-24630)
[»] scaffold0034 (2 HSPs)
scaffold0034 (280-349)||(41003-41072)
scaffold0034 (280-349)||(46510-46579)
[»] scaffold0011 (2 HSPs)
scaffold0011 (280-349)||(254649-254717)
scaffold0011 (280-349)||(261255-261323)
[»] chr8 (11 HSPs)
chr8 (280-349)||(20529686-20529755)
chr8 (281-349)||(25122786-25122853)
chr8 (280-349)||(37612013-37612081)
chr8 (280-349)||(20481948-20482016)
chr8 (295-349)||(20561479-20561533)
chr8 (295-349)||(20573040-20573094)
chr8 (295-349)||(20653881-20653935)
chr8 (282-349)||(41247002-41247068)
chr8 (280-349)||(22234639-22234707)
chr8 (295-349)||(21681349-21681403)
chr8 (295-349)||(19992906-19992959)
[»] chr5 (12 HSPs)
chr5 (280-349)||(20712421-20712490)
chr5 (280-349)||(21397437-21397506)
chr5 (280-349)||(21646575-21646643)
chr5 (280-349)||(1168039-1168107)
chr5 (280-349)||(21907043-21907112)
chr5 (295-349)||(22662530-22662584)
chr5 (295-349)||(23466780-23466834)
chr5 (295-349)||(24182980-24183034)
chr5 (295-349)||(19405884-19405938)
chr5 (296-349)||(4865606-4865658)
chr5 (295-349)||(11337034-11337088)
chr5 (295-349)||(28261860-28261913)
[»] chr1 (6 HSPs)
chr1 (280-349)||(35055101-35055170)
chr1 (280-349)||(22402943-22403012)
chr1 (280-349)||(20346369-20346437)
chr1 (280-349)||(49967995-49968063)
chr1 (292-349)||(27329611-27329668)
chr1 (295-349)||(35522200-35522254)
[»] scaffold0673 (2 HSPs)
scaffold0673 (280-347)||(6681-6748)
scaffold0673 (280-349)||(656-724)
[»] scaffold0021 (5 HSPs)
scaffold0021 (282-349)||(132084-132151)
scaffold0021 (280-349)||(88620-88689)
scaffold0021 (295-349)||(16246-16300)
scaffold0021 (295-349)||(25777-25831)
scaffold0021 (292-349)||(12034-12091)
[»] scaffold0447 (2 HSPs)
scaffold0447 (280-349)||(4906-4974)
scaffold0447 (280-349)||(9520-9588)
[»] scaffold0383 (1 HSPs)
scaffold0383 (280-349)||(7515-7583)
[»] scaffold0240 (1 HSPs)
scaffold0240 (280-349)||(7915-7983)
[»] scaffold0008 (1 HSPs)
scaffold0008 (280-349)||(23036-23105)
[»] scaffold0117 (1 HSPs)
scaffold0117 (295-348)||(11417-11470)
[»] scaffold0083 (1 HSPs)
scaffold0083 (280-349)||(15217-15285)
[»] scaffold0120 (3 HSPs)
scaffold0120 (299-349)||(31554-31604)
scaffold0120 (299-349)||(47402-47452)
scaffold0120 (299-349)||(21855-21905)
[»] scaffold0338 (1 HSPs)
scaffold0338 (296-349)||(9332-9385)
[»] scaffold0260 (1 HSPs)
scaffold0260 (280-349)||(8692-8760)
[»] scaffold0183 (1 HSPs)
scaffold0183 (280-345)||(5510-5575)
[»] scaffold0001 (3 HSPs)
scaffold0001 (292-349)||(70470-70527)
scaffold0001 (280-345)||(79723-79788)
scaffold0001 (280-349)||(61152-61221)
[»] scaffold0031 (2 HSPs)
scaffold0031 (295-349)||(70957-71011)
scaffold0031 (295-349)||(31390-31444)
[»] scaffold0022 (1 HSPs)
scaffold0022 (295-349)||(112394-112448)
[»] scaffold0026 (1 HSPs)
scaffold0026 (295-349)||(89713-89767)
[»] scaffold0014 (2 HSPs)
scaffold0014 (295-349)||(159644-159698)
scaffold0014 (301-349)||(85676-85724)
[»] scaffold0103 (1 HSPs)
scaffold0103 (297-349)||(34007-34059)
[»] scaffold0016 (1 HSPs)
scaffold0016 (297-349)||(164558-164609)
[»] scaffold1867 (1 HSPs)
scaffold1867 (295-349)||(489-542)
[»] scaffold0740 (1 HSPs)
scaffold0740 (295-349)||(4628-4681)
[»] scaffold0610 (1 HSPs)
scaffold0610 (295-349)||(424-478)
[»] scaffold0480 (2 HSPs)
scaffold0480 (295-349)||(5097-5150)
scaffold0480 (295-349)||(8729-8783)
[»] scaffold0342 (1 HSPs)
scaffold0342 (299-349)||(12614-12664)
[»] scaffold0396 (1 HSPs)
scaffold0396 (296-345)||(11557-11606)
[»] scaffold0816 (1 HSPs)
scaffold0816 (297-349)||(2917-2968)
[»] scaffold0589 (1 HSPs)
scaffold0589 (295-349)||(8150-8204)
[»] scaffold0058 (1 HSPs)
scaffold0058 (295-349)||(70154-70208)
[»] scaffold0035 (2 HSPs)
scaffold0035 (295-349)||(109309-109363)
scaffold0035 (295-349)||(117810-117864)


Alignment Details
Target: chr2 (Bit Score: 160; Significance: 3e-85; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 38 - 212
Target Start/End: Complemental strand, 41671082 - 41670910
Alignment:
Q  38 ctttagttttgaagattatttgactggtcaaaaatataaactttgcaatcacatgcgtgtaagtaacattatcattggtaaacagaattagtgtaaatag 137  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  41671082 ctttagttttgaagattatttgactggtcaaaaatataaactttgcaatcacatgcgtgtaagtaacattatcattggtaaacaaaattagtgtaaatag 41670983  T
Q  138 tagtacatatatattcatcaattgtttttgcttagttgggcacataaatttgagtcaatgtgaaacaatcttttt 212  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41670982 tagtacat--atattcatcaattgtttttgcttagttgggcacataaatttgagtcaatgtgaaacaatcttttt 41670910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 280 - 349
Target Start/End: Original strand, 36890519 - 36890588
Alignment:
Q  280 tcaagggttggcagaagagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    |||| |||||| ||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||    
T  36890519 tcaaaggttgggagaagagctagcagcaaaattgaagcctaagctatagagattaacctaactaaggtaa 36890588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 295 - 349
Target Start/End: Complemental strand, 28974447 - 28974393
Alignment:
Q  295 agagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    |||||||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  28974447 agagctaggagcaaaattgaagtctaagctagggagattaatctaactaaggtaa 28974393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 295 - 349
Target Start/End: Complemental strand, 271568 - 271514
Alignment:
Q  295 agagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    |||||||||||||||||||||| ||||||||  ||||||||||||||||||||||    
T  271568 agagctaggagcaaaattgaagcctaagctaaggagattaacctaactaaggtaa 271514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 280 - 349
Target Start/End: Complemental strand, 25602439 - 25602370
Alignment:
Q  280 tcaagggttggcagaagagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    |||||| ||||  ||||||||| |||||||||||||| ||||||||| |||||||| |||||||||||||    
T  25602439 tcaaggattgggggaagagctatgagcaaaattgaagcctaagctagggagattaatctaactaaggtaa 25602370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 280 - 339
Target Start/End: Complemental strand, 17367232 - 17367174
Alignment:
Q  280 tcaagggttggcagaagagctaggagcaaaattgaagtctaagctagagagattaaccta 339  Q
    ||||||||||| |||||||||| |||||||||||||| |||||||||||| |||||||||    
T  17367232 tcaagggttgggagaagagctacgagcaaaattgaagcctaagctagaga-attaaccta 17367174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 297 - 349
Target Start/End: Complemental strand, 27262201 - 27262149
Alignment:
Q  297 agctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    |||||||||| ||||||||| ||||||||| |||||||| |||||||||||||    
T  27262201 agctaggagctaaattgaagcctaagctagggagattaatctaactaaggtaa 27262149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 295 - 349
Target Start/End: Original strand, 4447981 - 4448035
Alignment:
Q  295 agagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    |||||||| ||||||||||||| |||| |||| |||||||| |||||||||||||    
T  4447981 agagctagaagcaaaattgaagcctaaactagggagattaatctaactaaggtaa 4448035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 295 - 349
Target Start/End: Original strand, 22579711 - 22579765
Alignment:
Q  295 agagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    |||||||||||| ||||||||| ||||||||| ||||||||  ||||||||||||    
T  22579711 agagctaggagctaaattgaagcctaagctagggagattaatttaactaaggtaa 22579765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 295 - 349
Target Start/End: Original strand, 25875770 - 25875823
Alignment:
Q  295 agagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    ||||||| |||||||||||||| ||||||||| ||||||||||| ||||||||||    
T  25875770 agagctacgagcaaaattgaagcctaagctagggagattaacct-actaaggtaa 25875823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 347
Target Start/End: Original strand, 24571141 - 24571193
Alignment:
Q  295 agagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggt 347  Q
    |||||||||||| |||||||||| |||| ||| |||||||| |||||||||||    
T  24571141 agagctaggagctaaattgaagtttaagatagggagattaatctaactaaggt 24571193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 4e-29; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 280 - 349
Target Start/End: Original strand, 26069441 - 26069510
Alignment:
Q  280 tcaagggttggcagaagagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26069441 tcaagggttgggagaagagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 26069510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 280 - 349
Target Start/End: Original strand, 26070099 - 26070168
Alignment:
Q  280 tcaagggttggcagaagagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26070099 tcaagggttgggagaagagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 26070168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 280 - 349
Target Start/End: Original strand, 26093886 - 26093955
Alignment:
Q  280 tcaagggttggcagaagagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26093886 tcaagggttgggagaagagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 26093955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 280 - 349
Target Start/End: Complemental strand, 144052 - 143984
Alignment:
Q  280 tcaagggttggcagaagagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  144052 tcaagggttgggagaagagctaggagcaaaattgaagcctaagctagagagattaacct-actaaggtaa 143984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 280 - 349
Target Start/End: Original strand, 13862766 - 13862835
Alignment:
Q  280 tcaagggttggcagaagagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    |||| |||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  13862766 tcaatggttgggagaagagctaggagcaaaattgaagcctaagttagagagattaacctaactaaggtaa 13862835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 280 - 349
Target Start/End: Original strand, 15822266 - 15822334
Alignment:
Q  280 tcaagggttggcagaagagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  15822266 tcaagggttgggagaagagctaggagcaaaattaaagtctaagctagagagattaacct-actaaggtaa 15822334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 280 - 349
Target Start/End: Complemental strand, 47290196 - 47290127
Alignment:
Q  280 tcaagggttggcagaagagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    ||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||    
T  47290196 tcaagggttgggagaagagcttggagcaaaattgaagtctaaactagagagattaacctaattaaggtaa 47290127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 295 - 349
Target Start/End: Complemental strand, 12759387 - 12759333
Alignment:
Q  295 agagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  12759387 agagctaggagcaaaattgaagtctaagctagggagattaacctaactaaggtaa 12759333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 280 - 349
Target Start/End: Original strand, 12369673 - 12369742
Alignment:
Q  280 tcaagggttggcagaagagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    ||||||||||| ||||||  ||||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  12369673 tcaagggttgggagaagatttaggagcgaaattgaagcctaagctagagagattaacctaactaaggtaa 12369742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 295 - 349
Target Start/End: Complemental strand, 11287815 - 11287761
Alignment:
Q  295 agagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    |||||||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  11287815 agagctaggagcaaaattgaagtctaagctagggagattaatctaactaaggtaa 11287761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 295 - 349
Target Start/End: Original strand, 45452016 - 45452070
Alignment:
Q  295 agagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  45452016 agagctaggagcaaaattgaagcctaagctatagagattaacctaactaaggtaa 45452070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 295 - 349
Target Start/End: Complemental strand, 44865628 - 44865575
Alignment:
Q  295 agagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  44865628 agagctaggagcaaaattgaagcctaagctagagagattaacct-actaaggtaa 44865575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 295 - 349
Target Start/End: Original strand, 12247968 - 12248022
Alignment:
Q  295 agagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    |||| ||||||||||||||||| ||||||||| |||||||| |||||||||||||    
T  12247968 agaggtaggagcaaaattgaagcctaagctagggagattaatctaactaaggtaa 12248022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 296 - 349
Target Start/End: Complemental strand, 3895421 - 3895369
Alignment:
Q  296 gagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    ||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||    
T  3895421 gagctaggagcaaaattgaagcctaagctagggagattaacct-actaaggtaa 3895369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 349
Target Start/End: Original strand, 16569854 - 16569908
Alignment:
Q  295 agagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    |||||||||||| |||||||||  |||||||| |||||||| ||||| |||||||    
T  16569854 agagctaggagctaaattgaagcataagctagggagattaatctaacaaaggtaa 16569908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 349
Target Start/End: Complemental strand, 16595808 - 16595754
Alignment:
Q  295 agagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    |||||||||||| |||||||||  |||||||| |||||||| ||||| |||||||    
T  16595808 agagctaggagctaaattgaagcataagctagggagattaatctaacaaaggtaa 16595754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 280 - 349
Target Start/End: Complemental strand, 38712 - 38643
Alignment:
Q  280 tcaagggttggcagaagagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  38712 tcaagggttgggagaagagctaggagcaaaattgaagcctaagctagagagattaacctaactaaggtaa 38643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 280 - 349
Target Start/End: Complemental strand, 18777543 - 18777474
Alignment:
Q  280 tcaagggttggcagaagagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  18777543 tcaagggttgggagaagagctaggagcaaaattgaagcctaagctagagagattaacctaactaaggtaa 18777474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 280 - 349
Target Start/End: Complemental strand, 32899204 - 32899135
Alignment:
Q  280 tcaagggttggcagaagagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  32899204 tcaagggttgggagaagagctaggagcaaaattgaagtctaagctagatagattaacctaactaaggtaa 32899135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 280 - 349
Target Start/End: Complemental strand, 16106930 - 16106861
Alignment:
Q  280 tcaagggttggcagaagagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    ||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||    
T  16106930 tcaagggttgggagaagagctaggagtaaaattgaagcctaagctagagagattaacctaactaaggtaa 16106861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 280 - 349
Target Start/End: Complemental strand, 18433056 - 18432987
Alignment:
Q  280 tcaagggttggcagaagagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    ||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||    
T  18433056 tcaagggttgggagaagagctaggagaaaaattgaagcctaagctagagagattaacctaactaaggtaa 18432987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 280 - 349
Target Start/End: Complemental strand, 16086431 - 16086362
Alignment:
Q  280 tcaagggttggcagaagagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    ||||||||||| ||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  16086431 tcaagggttgggagaagaaataggagcaaaattgaagcctaagctagagagattaacctaactaaggtaa 16086362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 280 - 349
Target Start/End: Original strand, 25640395 - 25640463
Alignment:
Q  280 tcaagggttggcagaagagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    ||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||    
T  25640395 tcaagggttgggagaagagctaggagcaaaattgaagcctaatctagagagattaacc-aactaaggtaa 25640463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 295 - 349
Target Start/End: Complemental strand, 18399337 - 18399283
Alignment:
Q  295 agagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    |||||||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  18399337 agagctaggagcaaaattgaagtctaagctagggagattaatctaactaaggtaa 18399283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 295 - 335
Target Start/End: Complemental strand, 31628589 - 31628549
Alignment:
Q  295 agagctaggagcaaaattgaagtctaagctagagagattaa 335  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  31628589 agagctaggagcaaaattgaagcctaagctagagagattaa 31628549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 295 - 349
Target Start/End: Original strand, 13014557 - 13014610
Alignment:
Q  295 agagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    |||||||||||||||||| ||| ||||||||| ||||||||||| ||||||||||    
T  13014557 agagctaggagcaaaatttaagcctaagctagggagattaacct-actaaggtaa 13014610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 295 - 349
Target Start/End: Original strand, 15079559 - 15079613
Alignment:
Q  295 agagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    |||||||||||||||| |||||  |||||||||| |||||| |||||||||||||    
T  15079559 agagctaggagcaaaagtgaagcttaagctagagggattaatctaactaaggtaa 15079613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 295 - 349
Target Start/End: Complemental strand, 22441331 - 22441278
Alignment:
Q  295 agagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    ||||||||||| |||||||||||||||||||  ||||||||||| ||||||||||    
T  22441331 agagctaggagaaaaattgaagtctaagctatggagattaacct-actaaggtaa 22441278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 349
Target Start/End: Complemental strand, 18570675 - 18570623
Alignment:
Q  296 gagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    ||||||||||||||||||||| ||||||||  ||||||||| | ||||||||||    
T  18570675 gagctaggagcaaaattgaagcctaagctaaggagattaacat-actaaggtaa 18570623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 280 - 349
Target Start/End: Original strand, 21959297 - 21959366
Alignment:
Q  280 tcaagggttggcagaagagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21959297 tcaagagttgggagaagagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 21959366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 280 - 349
Target Start/End: Original strand, 30232329 - 30232398
Alignment:
Q  280 tcaagggttggcagaagagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30232329 tcaaggattgggagaagagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 30232398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 280 - 349
Target Start/End: Original strand, 819764 - 819833
Alignment:
Q  280 tcaagggttggcagaagagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    ||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||    
T  819764 tcaagggttgggagaagagctatgagcaaaattgaagcctaagctagagagattaacctaactaaggtaa 819833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 280 - 349
Target Start/End: Original strand, 20813380 - 20813449
Alignment:
Q  280 tcaagggttggcagaagagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    ||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  20813380 tcaagggttgggagaagagctaggagcgaaattgaagcctaagctagagagattaacctaactaaggtaa 20813449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 280 - 349
Target Start/End: Complemental strand, 34395671 - 34395602
Alignment:
Q  280 tcaagggttggcagaagagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    ||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||    
T  34395671 tcaagggttgggagaagagctaggagaaaaattgaagcctaagctagagagattaacctaactaaggtaa 34395602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 280 - 349
Target Start/End: Original strand, 45458689 - 45458758
Alignment:
Q  280 tcaagggttggcagaagagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  45458689 tcaagggttgggagaaaagctaggagcaaaattgaagtctaagctaaagagattaacctaactaaggtaa 45458758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 280 - 349
Target Start/End: Complemental strand, 44056328 - 44056259
Alignment:
Q  280 tcaagggttggcagaagagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    ||||||||| | ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  44056328 tcaagggttagtagaagagctaggagcaaaattgaaacctaagctagagagattaacctaactaaggtaa 44056259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 280 - 349
Target Start/End: Original strand, 12837035 - 12837103
Alignment:
Q  280 tcaagggttggcagaagagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||    
T  12837035 tcaagggttgggagaagagctaggagcaaaattgaagcctaagctagggagattaacct-actaaggtaa 12837103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 296 - 349
Target Start/End: Original strand, 23269783 - 23269836
Alignment:
Q  296 gagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  23269783 gagctaggagcaaaattgaagcctaagctagagagattaacctaactaaggtaa 23269836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 280 - 339
Target Start/End: Original strand, 8872307 - 8872366
Alignment:
Q  280 tcaagggttggcagaagagctaggagcaaaattgaagtctaagctagagagattaaccta 339  Q
    ||||||||| | ||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  8872307 tcaagggttaggagaagagctaggagcaaaattgaagcctaagctagggagattaaccta 8872366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 299 - 349
Target Start/End: Complemental strand, 30458297 - 30458248
Alignment:
Q  299 ctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    |||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  30458297 ctaggagcaaaattgaagcctaagctagagagattaacct-actaaggtaa 30458248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 295 - 349
Target Start/End: Complemental strand, 16732567 - 16732513
Alignment:
Q  295 agagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    |||||||||| ||||||||||| |||| |||| |||||||| |||||||||||||    
T  16732567 agagctaggaccaaaattgaagcctaaactagggagattaatctaactaaggtaa 16732513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 295 - 349
Target Start/End: Original strand, 52265356 - 52265410
Alignment:
Q  295 agagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    |||||||||||| ||||||||| ||||||||| |||||||| || ||||||||||    
T  52265356 agagctaggagctaaattgaagcctaagctagggagattaatctgactaaggtaa 52265410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 280 - 349
Target Start/End: Original strand, 6146602 - 6146671
Alignment:
Q  280 tcaagggttggcagaagagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  6146602 tcaagggttgggagaagagctaggagcaaaattgaagcctaagctagagagattaacctaactaaggtaa 6146671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 280 - 349
Target Start/End: Complemental strand, 17101066 - 17100997
Alignment:
Q  280 tcaagggttggcagaagagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  17101066 tcaagggttgggagaagagctaggagcaaaattgaagtctaagctagagaaattaacctaactaaggtaa 17100997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 280 - 349
Target Start/End: Complemental strand, 17101751 - 17101682
Alignment:
Q  280 tcaagggttggcagaagagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  17101751 tcaagggttgggagaagagctaggagcaaaattgaagtctaagctagagaaattaacctaactaaggtaa 17101682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 280 - 349
Target Start/End: Complemental strand, 54424426 - 54424357
Alignment:
Q  280 tcaagggttggcagaagagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    |||||| |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  54424426 tcaaggattgggagaagagctaggcgcaaaattgaagtctaagctagagagattaacctaactaaggtaa 54424357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 280 - 342
Target Start/End: Complemental strand, 13836035 - 13835973
Alignment:
Q  280 tcaagggttggcagaagagctaggagcaaaattgaagtctaagctagagagattaacctaact 342  Q
    ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  13836035 tcaagggttgggagaagagctaggagcaaaattgaagcctaagctagagagattaacctaact 13835973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 280 - 349
Target Start/End: Original strand, 6154164 - 6154233
Alignment:
Q  280 tcaagggttggcagaagagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    ||||||||||| |||||| |||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  6154164 tcaagggttgggagaagatctaggagcaaaattgaagcctaagctagagatattaacctaactaaggtaa 6154233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 280 - 349
Target Start/End: Complemental strand, 30207632 - 30207563
Alignment:
Q  280 tcaagggttggcagaagagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||    
T  30207632 tcaagggttgggagaagagctaggagcaaaattgaagcctaagctagggagattaatctaactaaggtaa 30207563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 295 - 349
Target Start/End: Original strand, 50111899 - 50111953
Alignment:
Q  295 agagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  50111899 agagctaggagcaaaattgaagcctaagctagagagattaacctaactaaggtaa 50111953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 280 - 349
Target Start/End: Original strand, 317344 - 317412
Alignment:
Q  280 tcaagggttggcagaagagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||    
T  317344 tcaagggttgggagaagagctaggagcaaaattgaagcctaagctagggagattaacct-actaaggtaa 317412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 280 - 349
Target Start/End: Original strand, 34439176 - 34439244
Alignment:
Q  280 tcaagggttggcagaagagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    ||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||    
T  34439176 tcaagggttgggagaagagctaggagcaaaattgaagcctatgctagagagattaacct-actaaggtaa 34439244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 295 - 349
Target Start/End: Complemental strand, 14298820 - 14298766
Alignment:
Q  295 agagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||    
T  14298820 agagctaggagaaaaattgaagcctaagctagagagattaacctaactaaggtaa 14298766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 295 - 349
Target Start/End: Complemental strand, 14304447 - 14304393
Alignment:
Q  295 agagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||    
T  14304447 agagctaggagaaaaattgaagcctaagctagagagattaacctaactaaggtaa 14304393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 280 - 349
Target Start/End: Complemental strand, 38528140 - 38528072
Alignment:
Q  280 tcaagggttggcagaagagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    ||||||||||| |||||||||||||||||||||||||  |||||||| ||||||||||| ||||||||||    
T  38528140 tcaagggttgggagaagagctaggagcaaaattgaagcttaagctagggagattaacct-actaaggtaa 38528072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 295 - 349
Target Start/End: Original strand, 14527928 - 14527982
Alignment:
Q  295 agagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    |||||||||||||||||||||| ||||||||| |||||||| |||||||||||||    
T  14527928 agagctaggagcaaaattgaagcctaagctagggagattaatctaactaaggtaa 14527982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 295 - 349
Target Start/End: Complemental strand, 35124094 - 35124040
Alignment:
Q  295 agagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    |||||||||||||||||||||| ||||||||| |||||||| |||||||||||||    
T  35124094 agagctaggagcaaaattgaagcctaagctagggagattaatctaactaaggtaa 35124040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 296 - 349
Target Start/End: Original strand, 12349388 - 12349441
Alignment:
Q  296 gagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    ||||||||||||| |||||||  |||||||||||||||||||||||||||||||    
T  12349388 gagctaggagcaatattgaagcttaagctagagagattaacctaactaaggtaa 12349441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 280 - 349
Target Start/End: Original strand, 16995895 - 16995963
Alignment:
Q  280 tcaagggttggcagaagagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    ||||||||||| ||||||||||||||||||||||||| |||||||||  ||||||| || ||||||||||    
T  16995895 tcaagggttgggagaagagctaggagcaaaattgaagcctaagctaggtagattaagct-actaaggtaa 16995963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 280 - 349
Target Start/End: Original strand, 22144106 - 22144174
Alignment:
Q  280 tcaagggttggcagaagagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    ||||||||||| ||||||| ||| || |||||||||| ||||||||||||||||||||| ||||||||||    
T  22144106 tcaagggttgggagaagagatagaagaaaaattgaagcctaagctagagagattaacct-actaaggtaa 22144174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 295 - 349
Target Start/End: Original strand, 17522738 - 17522792
Alignment:
Q  295 agagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    |||||||||||||||||||||| ||||||||| ||||||||  ||||||||||||    
T  17522738 agagctaggagcaaaattgaagcctaagctagggagattaatataactaaggtaa 17522792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 295 - 349
Target Start/End: Complemental strand, 40939525 - 40939471
Alignment:
Q  295 agagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    |||||||||||||||||||||| ||||||||| ||||||||  ||||||||||||    
T  40939525 agagctaggagcaaaattgaagcctaagctagggagattaatataactaaggtaa 40939471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 295 - 349
Target Start/End: Original strand, 55440706 - 55440760
Alignment:
Q  295 agagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    |||||||||||||||||||||| ||| ||||| |||||||| |||||||||||||    
T  55440706 agagctaggagcaaaattgaagcctaggctagggagattaatctaactaaggtaa 55440760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 297 - 349
Target Start/End: Complemental strand, 13817906 - 13817855
Alignment:
Q  297 agctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    ||||| |||||||||||||||||||||||| ||||||||||| ||||||||||    
T  13817906 agctatgagcaaaattgaagtctaagctagggagattaacct-actaaggtaa 13817855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 295 - 349
Target Start/End: Complemental strand, 3578487 - 3578433
Alignment:
Q  295 agagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    ||||||| ||| |||||||||| ||||||||| |||||||| |||||||||||||    
T  3578487 agagctatgagaaaaattgaagcctaagctagggagattaatctaactaaggtaa 3578433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 295 - 349
Target Start/End: Original strand, 11060855 - 11060909
Alignment:
Q  295 agagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    |||||||||||||||| |||||  |||||||| |||||||| |||||||||||||    
T  11060855 agagctaggagcaaaactgaagcttaagctagggagattaatctaactaaggtaa 11060909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 295 - 349
Target Start/End: Original strand, 16181796 - 16181849
Alignment:
Q  295 agagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    |||||||||||||||||||||| ||||||||| |||||||| || ||||||||||    
T  16181796 agagctaggagcaaaattgaagcctaagctagggagattaatct-actaaggtaa 16181849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 349
Target Start/End: Complemental strand, 14295837 - 14295783
Alignment:
Q  295 agagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    |||||||||||| ||||||||  |||| |||| |||||||| |||||||||||||    
T  14295837 agagctaggagctaaattgaaccctaatctagggagattaatctaactaaggtaa 14295783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 349
Target Start/End: Complemental strand, 14301464 - 14301410
Alignment:
Q  295 agagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    |||||||||||| ||||||||  |||| |||| |||||||| |||||||||||||    
T  14301464 agagctaggagctaaattgaaccctaatctagggagattaatctaactaaggtaa 14301410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 349
Target Start/End: Original strand, 19570542 - 19570593
Alignment:
Q  297 agctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    |||||||||||||||| ||| || |||||| ||||||||||| ||||||||||    
T  19570542 agctaggagcaaaattcaagccttagctagggagattaacct-actaaggtaa 19570593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0359 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: scaffold0359
Description:

Target: scaffold0359; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 280 - 346
Target Start/End: Complemental strand, 1729 - 1663
Alignment:
Q  280 tcaagggttggcagaagagctaggagcaaaattgaagtctaagctagagagattaacctaactaagg 346  Q
    ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  1729 tcaagggttgggagaagagctaggagcaaaattgaagcctaagctagagagattaacctaactaagg 1663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0359; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 297 - 349
Target Start/End: Original strand, 11504 - 11555
Alignment:
Q  297 agctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  11504 agctaggagcaaaattgaagcctaagctagagagattaacct-actaaggtaa 11555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 280 - 349
Target Start/End: Complemental strand, 48557 - 48489
Alignment:
Q  280 tcaagggttggcagaagagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  48557 tcaagggttgggagaagagctaggagcaaaattgaagtctaagctagagagattaacct-actaaggtaa 48489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 280 - 349
Target Start/End: Complemental strand, 62005 - 61937
Alignment:
Q  280 tcaagggttggcagaagagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  62005 tcaagggttgggagaagagctaggagcaaaattgaagtctaagctagagagattaacct-actaaggtaa 61937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 280 - 349
Target Start/End: Original strand, 24561 - 24630
Alignment:
Q  280 tcaagggttggcagaagagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    ||||||||||| |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  24561 tcaagggttgggagaagagctaggagcaaaattgaagcataagctagagagattaacctaactaaggtaa 24630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 280 - 349
Target Start/End: Complemental strand, 41072 - 41003
Alignment:
Q  280 tcaagggttggcagaagagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    ||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  41072 tcaagggttgggagaagagctaggagcaaaattgaagcctaagctaaagagattaacctaactaaggtaa 41003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 280 - 349
Target Start/End: Complemental strand, 46579 - 46510
Alignment:
Q  280 tcaagggttggcagaagagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    ||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||    
T  46579 tcaagggttgggagaagagctaggagcaaaattgaagcctaagctaaagagattaacctaattaaggtaa 46510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 280 - 349
Target Start/End: Original strand, 254649 - 254717
Alignment:
Q  280 tcaagggttggcagaagagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  254649 tcaagggttgggagaagagctaggagcaaaattgaagtctaagctagagagattaacct-actaaggtaa 254717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 280 - 349
Target Start/End: Original strand, 261255 - 261323
Alignment:
Q  280 tcaagggttggcagaagagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  261255 tcaagggttgggagaagagctaggagcaaaattgaagactaagctagagagattaacct-actaaggtaa 261323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 280 - 349
Target Start/End: Original strand, 20529686 - 20529755
Alignment:
Q  280 tcaagggttggcagaagagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    ||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  20529686 tcaagggttgggagaagatctaggagcaaaattgaagcctaagctagagagattaacctaactaaggtaa 20529755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 281 - 349
Target Start/End: Complemental strand, 25122853 - 25122786
Alignment:
Q  281 caagggttggcagaagagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  25122853 caagggttgggagaagagctaggagcaaaattgaagcctaagctagagagattaacct-actaaggtaa 25122786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 280 - 349
Target Start/End: Complemental strand, 37612081 - 37612013
Alignment:
Q  280 tcaagggttggcagaagagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    ||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||    
T  37612081 tcaagggttgggagaagagctaggagcaaaattgaagcctaagatagagagattaacct-actaaggtaa 37612013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 280 - 349
Target Start/End: Complemental strand, 20482016 - 20481948
Alignment:
Q  280 tcaagggttggcagaagagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    ||||||||||| ||||||| ||||||||||||||||| ||||||||| ||||||||||| ||||||||||    
T  20482016 tcaagggttgggagaagaggtaggagcaaaattgaagcctaagctagggagattaacct-actaaggtaa 20481948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 295 - 349
Target Start/End: Original strand, 20561479 - 20561533
Alignment:
Q  295 agagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    |||||||||||||||||||||| ||||||||| |||||||| |||||||||||||    
T  20561479 agagctaggagcaaaattgaagcctaagctagggagattaatctaactaaggtaa 20561533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 295 - 349
Target Start/End: Original strand, 20573040 - 20573094
Alignment:
Q  295 agagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    |||||||||||||||||||||| ||||||||| |||||||| |||||||||||||    
T  20573040 agagctaggagcaaaattgaagcctaagctagggagattaatctaactaaggtaa 20573094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 295 - 349
Target Start/End: Original strand, 20653881 - 20653935
Alignment:
Q  295 agagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    |||||||||||||||||||||| ||||||||| |||||||| |||||||||||||    
T  20653881 agagctaggagcaaaattgaagcctaagctagggagattaatctaactaaggtaa 20653935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 282 - 349
Target Start/End: Complemental strand, 41247068 - 41247002
Alignment:
Q  282 aagggttggcagaagagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    ||||||| | ||||||| ||||||||||||||||| |||||||||||||||| |||| ||||||||||    
T  41247068 aagggttcggagaagaggtaggagcaaaattgaagcctaagctagagagattgacct-actaaggtaa 41247002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 280 - 349
Target Start/End: Original strand, 22234639 - 22234707
Alignment:
Q  280 tcaagggttggcagaagagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    ||||||||||| ||||||||||||||||||||||||| ||||| | | |||||||| || ||||||||||    
T  22234639 tcaagggttgggagaagagctaggagcaaaattgaagactaagtttgggagattaatct-actaaggtaa 22234707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 295 - 349
Target Start/End: Complemental strand, 21681403 - 21681349
Alignment:
Q  295 agagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    ||||||||||| |||||||||| ||||||||| |||||||| |||| ||||||||    
T  21681403 agagctaggagaaaaattgaagcctaagctagggagattaatctaaataaggtaa 21681349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 349
Target Start/End: Original strand, 19992906 - 19992959
Alignment:
Q  295 agagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    ||||||||||| |||||||||| ||||||||| |||||||| || ||||||||||    
T  19992906 agagctaggagaaaaattgaagcctaagctagggagattaatct-actaaggtaa 19992959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 280 - 349
Target Start/End: Complemental strand, 20712490 - 20712421
Alignment:
Q  280 tcaagggttggcagaagagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    ||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  20712490 tcaagggttgggagaagagctaggagcaaaattgaagcctaagctagagaaattaacctaactaaggtaa 20712421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 280 - 349
Target Start/End: Complemental strand, 21397506 - 21397437
Alignment:
Q  280 tcaagggttggcagaagagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    ||||||||||| |||||| ||||||| |||||||||| ||||| ||||||||||||||||||||||||||    
T  21397506 tcaagggttgggagaagatctaggagaaaaattgaagcctaagatagagagattaacctaactaaggtaa 21397437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 280 - 349
Target Start/End: Original strand, 21646575 - 21646643
Alignment:
Q  280 tcaagggttggcagaagagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    ||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||| ||||||||||    
T  21646575 tcaagggttgggagaagagctaggagcaaaattgaagcctaaactagagagattaacct-actaaggtaa 21646643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 280 - 349
Target Start/End: Original strand, 1168039 - 1168107
Alignment:
Q  280 tcaagggttggcagaagagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||| || ||||||||||    
T  1168039 tcaagggttgggagaagagctaggagcaaaattgaagcctaagctagggagattaatct-actaaggtaa 1168107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 280 - 349
Target Start/End: Complemental strand, 21907112 - 21907043
Alignment:
Q  280 tcaagggttggcagaagagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    ||||||||| | ||||||||||||||||||||||||| |||||||||||||| |||  ||||||||||||    
T  21907112 tcaagggtttggagaagagctaggagcaaaattgaagcctaagctagagagagtaatataactaaggtaa 21907043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 295 - 349
Target Start/End: Original strand, 22662530 - 22662584
Alignment:
Q  295 agagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    ||||||||||| |||||||||||||||||||| |||||||| |||||||||||||    
T  22662530 agagctaggagaaaaattgaagtctaagctagggagattaatctaactaaggtaa 22662584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 295 - 349
Target Start/End: Complemental strand, 23466834 - 23466780
Alignment:
Q  295 agagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    |||||||||||||||||||||| ||||||||| |||||||| |||||||||||||    
T  23466834 agagctaggagcaaaattgaagcctaagctagggagattaatctaactaaggtaa 23466780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 295 - 349
Target Start/End: Original strand, 24182980 - 24183034
Alignment:
Q  295 agagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    |||||||||||||||||||||| ||||||||| |||||||| |||||||||||||    
T  24182980 agagctaggagcaaaattgaagcctaagctagggagattaatctaactaaggtaa 24183034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 295 - 349
Target Start/End: Complemental strand, 19405938 - 19405884
Alignment:
Q  295 agagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    |||||||||||| ||||||||| ||||||||| |||||||| |||||||||||||    
T  19405938 agagctaggagctaaattgaagcctaagctagggagattaatctaactaaggtaa 19405884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 296 - 349
Target Start/End: Complemental strand, 4865658 - 4865606
Alignment:
Q  296 gagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    ||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||    
T  4865658 gagctaggagcaaaattgaagcctaagctagggagattaacct-actaaggtaa 4865606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 295 - 349
Target Start/End: Original strand, 11337034 - 11337088
Alignment:
Q  295 agagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    ||||||||||||||||||||||  | |||||| |||||||| |||||||||||||    
T  11337034 agagctaggagcaaaattgaagcttgagctagggagattaatctaactaaggtaa 11337088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 295 - 349
Target Start/End: Complemental strand, 28261913 - 28261860
Alignment:
Q  295 agagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    |||||||||||||||||||||| ||||||||  ||||||||||| ||||||||||    
T  28261913 agagctaggagcaaaattgaagcctaagctaaggagattaacct-actaaggtaa 28261860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 280 - 349
Target Start/End: Complemental strand, 35055170 - 35055101
Alignment:
Q  280 tcaagggttggcagaagagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    ||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  35055170 tcaagggttgggagaagatctaggagcaaaattgaagcctaagctagagagattaacctaactaaggtaa 35055101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 280 - 349
Target Start/End: Original strand, 22402943 - 22403012
Alignment:
Q  280 tcaagggttggcagaagagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    ||||||||||| ||||||| ||||||||||||| ||| ||||| ||||||||||||||||||||||||||    
T  22402943 tcaagggttggaagaagagttaggagcaaaattaaagcctaaggtagagagattaacctaactaaggtaa 22403012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 280 - 349
Target Start/End: Complemental strand, 20346437 - 20346369
Alignment:
Q  280 tcaagggttggcagaagagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    ||||||||| | ||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||    
T  20346437 tcaagggttaggagaagagctaggagcaaaattgaagcctaagctagggagattaacct-actaaggtaa 20346369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 280 - 349
Target Start/End: Complemental strand, 49968063 - 49967995
Alignment:
Q  280 tcaagggttggcagaagagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    ||||| ||||| ||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||    
T  49968063 tcaagagttgggagaagagctagaagcaaaattgaagtctaaggtagagagattaacct-actaaggtaa 49967995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 292 - 349
Target Start/End: Original strand, 27329611 - 27329668
Alignment:
Q  292 agaagagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    |||||||||||||| |||||||||| | || |||||||||||||||||||||||||||    
T  27329611 agaagagctaggagtaaaattgaagcccaatctagagagattaacctaactaaggtaa 27329668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 295 - 349
Target Start/End: Original strand, 35522200 - 35522254
Alignment:
Q  295 agagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    |||||||||||||||||||||| ||||||||  |||||||| |||||||||||||    
T  35522200 agagctaggagcaaaattgaagcctaagctaaggagattaatctaactaaggtaa 35522254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0673 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: scaffold0673
Description:

Target: scaffold0673; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 280 - 347
Target Start/End: Original strand, 6681 - 6748
Alignment:
Q  280 tcaagggttggcagaagagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggt 347  Q
    ||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  6681 tcaagggttgggagaagatctaggagcaaaattgaagcctaagctagagagattaacctaactaaggt 6748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0673; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 280 - 349
Target Start/End: Original strand, 656 - 724
Alignment:
Q  280 tcaagggttggcagaagagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    ||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||    
T  656 tcaagggttgggagaagagctaggagcaaaattgaagcctaagctagagagagtaacct-actaaggtaa 724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 56; Significance: 4e-23; HSPs: 5)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 282 - 349
Target Start/End: Original strand, 132084 - 132151
Alignment:
Q  282 aagggttggcagaagagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    ||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  132084 aagggttgggagaagagctatgagaaaaattgaagtctaagctagagagattaacctaactaaggtaa 132151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 280 - 349
Target Start/End: Complemental strand, 88689 - 88620
Alignment:
Q  280 tcaagggttggcagaagagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    ||||||||| | |||||||||||||| |||||||||| |||||||||||||||||| ||||  |||||||    
T  88689 tcaagggttcggagaagagctaggagaaaaattgaagcctaagctagagagattaatctaataaaggtaa 88620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 295 - 349
Target Start/End: Complemental strand, 16300 - 16246
Alignment:
Q  295 agagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    |||||||||||| ||||||||| ||||||||| |||||||| |||||||||||||    
T  16300 agagctaggagctaaattgaagcctaagctagggagattaatctaactaaggtaa 16246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 295 - 349
Target Start/End: Complemental strand, 25831 - 25777
Alignment:
Q  295 agagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    |||||||||||| ||||||||| ||||||||| |||||||| |||||||||||||    
T  25831 agagctaggagctaaattgaagcctaagctagggagattaatctaactaaggtaa 25777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 292 - 349
Target Start/End: Complemental strand, 12091 - 12034
Alignment:
Q  292 agaagagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    ||||||||||||||  ||||||||| ||||||||| |||||||| |||||||||||||    
T  12091 agaagagctaggagttaaattgaagcctaagctagggagattaatctaactaaggtaa 12034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0447 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: scaffold0447
Description:

Target: scaffold0447; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 280 - 349
Target Start/End: Complemental strand, 4974 - 4906
Alignment:
Q  280 tcaagggttggcagaagagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  4974 tcaagggttgggagaagagctaggagcaaaattgaagcctaagctagagagattaacct-actaaggtaa 4906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0447; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 280 - 349
Target Start/End: Complemental strand, 9588 - 9520
Alignment:
Q  280 tcaagggttggcagaagagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  9588 tcaagggttgggagaagagctaggagcaaaattgaagcctaagctagagagattaacct-actaaggtaa 9520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0383 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0383
Description:

Target: scaffold0383; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 280 - 349
Target Start/End: Complemental strand, 7583 - 7515
Alignment:
Q  280 tcaagggttggcagaagagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  7583 tcaagggttgggagaagagctaggagcaaaattgaagcctaagctagagagattaacct-actaaggtaa 7515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 280 - 349
Target Start/End: Complemental strand, 7983 - 7915
Alignment:
Q  280 tcaagggttggcagaagagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  7983 tcaagggttgggagaagagctaggagcaaaattgaagcctaagctagagagattaacct-actaaggtaa 7915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 280 - 349
Target Start/End: Complemental strand, 23105 - 23036
Alignment:
Q  280 tcaagggttggcagaagagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    |||||| |||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  23105 tcaaggattgggagaagagctaggagcaaaattgaagcctaagctaaagagattaacctaactaaggtaa 23036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 295 - 348
Target Start/End: Original strand, 11417 - 11470
Alignment:
Q  295 agagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggta 348  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  11417 agagctaggagcaaaattgaagcctaagctagagagattaacctaactaaggta 11470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 280 - 349
Target Start/End: Complemental strand, 15285 - 15217
Alignment:
Q  280 tcaagggttggcagaagagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    |||||||||||  |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  15285 tcaagggttgggggaagagctaggagcaaaattgaagcctaagctagagagattaacct-actaaggtaa 15217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0120 (Bit Score: 47; Significance: 9e-18; HSPs: 3)
Name: scaffold0120
Description:

Target: scaffold0120; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 299 - 349
Target Start/End: Complemental strand, 31604 - 31554
Alignment:
Q  299 ctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  31604 ctaggagcaaaattgaagcctaagctagagagattaacctaactaaggtaa 31554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0120; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 299 - 349
Target Start/End: Original strand, 47402 - 47452
Alignment:
Q  299 ctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  47402 ctaggagcaaaattgaagcctaagctagagagattaacctaactaaggtaa 47452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0120; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 299 - 349
Target Start/End: Complemental strand, 21905 - 21855
Alignment:
Q  299 ctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  21905 ctaggagcaaaattgaagcctaaggtagagagattaacctaactaaggtaa 21855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0338 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0338
Description:

Target: scaffold0338; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 296 - 349
Target Start/End: Complemental strand, 9385 - 9332
Alignment:
Q  296 gagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    ||||||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  9385 gagctaggagcaaaattgaagtctaagctagggagattaatctaactaaggtaa 9332  T

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Target: scaffold0260 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0260
Description:

Target: scaffold0260; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 280 - 349
Target Start/End: Complemental strand, 8760 - 8692
Alignment:
Q  280 tcaagggttggcagaagagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    ||||||||| | ||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||    
T  8760 tcaagggttaggagaagagctaggagcaaaattgaagcctaagctagggagattaacct-actaaggtaa 8692  T

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Target: scaffold0183 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0183
Description:

Target: scaffold0183; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 280 - 345
Target Start/End: Original strand, 5510 - 5575
Alignment:
Q  280 tcaagggttggcagaagagctaggagcaaaattgaagtctaagctagagagattaacctaactaag 345  Q
    ||||||||||| ||||||| ||||||||||||||||| ||||||||||| || |||||||||||||    
T  5510 tcaagggttgggagaagagttaggagcaaaattgaagcctaagctagagggagtaacctaactaag 5575  T

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Target: scaffold0001 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 292 - 349
Target Start/End: Original strand, 70470 - 70527
Alignment:
Q  292 agaagagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    ||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||    
T  70470 agaagagctaggatcaaaattgaagcctaacctagagagattaacctaactaaggtaa 70527  T

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Target: scaffold0001; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 280 - 345
Target Start/End: Original strand, 79723 - 79788
Alignment:
Q  280 tcaagggttggcagaagagctaggagcaaaattgaagtctaagctagagagattaacctaactaag 345  Q
    ||||||||||  |||||||||||||| ||||||||||  |||||||||||||||||||||||||||    
T  79723 tcaagggttgagagaagagctaggagtaaaattgaagcataagctagagagattaacctaactaag 79788  T

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Target: scaffold0001; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 280 - 349
Target Start/End: Complemental strand, 61221 - 61152
Alignment:
Q  280 tcaagggttggcagaagagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    ||||| ||||| ||||||| |||||||||||||||||  ||||||||||| |||||| ||||||||||||    
T  61221 tcaagagttgggagaagagataggagcaaaattgaagcttaagctagagaaattaacttaactaaggtaa 61152  T

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Target: scaffold0031 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 295 - 349
Target Start/End: Complemental strand, 71011 - 70957
Alignment:
Q  295 agagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    |||||||||||||||||||||| ||||||||| |||||||| |||||||||||||    
T  71011 agagctaggagcaaaattgaagcctaagctagggagattaatctaactaaggtaa 70957  T

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Target: scaffold0031; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 295 - 349
Target Start/End: Complemental strand, 31444 - 31390
Alignment:
Q  295 agagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    |||||||||| ||||||||||| ||||||||| |||||||| |||||||||||||    
T  31444 agagctaggatcaaaattgaagcctaagctagggagattaatctaactaaggtaa 31390  T

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Target: scaffold0022 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 295 - 349
Target Start/End: Original strand, 112394 - 112448
Alignment:
Q  295 agagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    |||||||||||||||||||||| ||||||||| |||||||| |||||||||||||    
T  112394 agagctaggagcaaaattgaagcctaagctagggagattaatctaactaaggtaa 112448  T

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Target: scaffold0026 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 295 - 349
Target Start/End: Original strand, 89713 - 89767
Alignment:
Q  295 agagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    |||||||||||| ||||||||| ||||||||| |||||||| |||||||||||||    
T  89713 agagctaggagctaaattgaagcctaagctagggagattaatctaactaaggtaa 89767  T

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Target: scaffold0014 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 295 - 349
Target Start/End: Complemental strand, 159698 - 159644
Alignment:
Q  295 agagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    |||||| ||||||||||||||| ||||||||| |||||||| |||||||||||||    
T  159698 agagcttggagcaaaattgaagcctaagctagggagattaatctaactaaggtaa 159644  T

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Target: scaffold0014; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 301 - 349
Target Start/End: Complemental strand, 85724 - 85676
Alignment:
Q  301 aggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    |||||||||||||||||||||||||| |||||||| || ||||||||||    
T  85724 aggagcaaaattgaagtctaagctagggagattaatcttactaaggtaa 85676  T

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Target: scaffold0103 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 297 - 349
Target Start/End: Complemental strand, 34059 - 34007
Alignment:
Q  297 agctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    |||||||||| ||||||||| ||||||||| |||||||| |||||||||||||    
T  34059 agctaggagctaaattgaagcctaagctagggagattaatctaactaaggtaa 34007  T

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Target: scaffold0016 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 297 - 349
Target Start/End: Complemental strand, 164609 - 164558
Alignment:
Q  297 agctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    |||||||||||||||||||| ||||||||| ||||||||||| ||||||||||    
T  164609 agctaggagcaaaattgaagcctaagctagggagattaacct-actaaggtaa 164558  T

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Target: scaffold1867 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1867
Description:

Target: scaffold1867; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 295 - 349
Target Start/End: Complemental strand, 542 - 489
Alignment:
Q  295 agagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    ||||||||||| |||||||||| ||||||||| ||||||||||| ||||||||||    
T  542 agagctaggagaaaaattgaagcctaagctagggagattaacct-actaaggtaa 489  T

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Target: scaffold0740 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0740
Description:

Target: scaffold0740; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 295 - 349
Target Start/End: Complemental strand, 4681 - 4628
Alignment:
Q  295 agagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    |||||||||||||||||||||| ||||||||| |||||||| || ||||||||||    
T  4681 agagctaggagcaaaattgaagcctaagctagggagattaatct-actaaggtaa 4628  T

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Target: scaffold0610 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0610
Description:

Target: scaffold0610; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 295 - 349
Target Start/End: Original strand, 424 - 478
Alignment:
Q  295 agagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    |||||||||| ||||||||||| |||| |||| |||||||| |||||||||||||    
T  424 agagctaggatcaaaattgaagcctaatctagggagattaatctaactaaggtaa 478  T

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Target: scaffold0480 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0480
Description:

Target: scaffold0480; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 295 - 349
Target Start/End: Original strand, 5097 - 5150
Alignment:
Q  295 agagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    |||||||||||||||||||||| ||||||||| |||||||| || ||||||||||    
T  5097 agagctaggagcaaaattgaagcctaagctagggagattaatct-actaaggtaa 5150  T

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Target: scaffold0480; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 295 - 349
Target Start/End: Original strand, 8729 - 8783
Alignment:
Q  295 agagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    ||||||||||| |||| ||||| ||||||||| |||||||| |||||||||||||    
T  8729 agagctaggagaaaaaatgaagcctaagctagggagattaatctaactaaggtaa 8783  T

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Target: scaffold0342 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0342
Description:

Target: scaffold0342; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 349
Target Start/End: Complemental strand, 12664 - 12614
Alignment:
Q  299 ctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    ||||||| |||||||||| ||||||||| |||||||| |||||||||||||    
T  12664 ctaggagaaaaattgaagcctaagctagggagattaatctaactaaggtaa 12614  T

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Target: scaffold0396 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0396
Description:

Target: scaffold0396; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 296 - 345
Target Start/End: Original strand, 11557 - 11606
Alignment:
Q  296 gagctaggagcaaaattgaagtctaagctagagagattaacctaactaag 345  Q
    ||||||||| ||||||||||| ||||||||| |||||||| |||||||||    
T  11557 gagctaggaacaaaattgaagcctaagctagggagattaatctaactaag 11606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0816 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0816
Description:

Target: scaffold0816; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 297 - 349
Target Start/End: Original strand, 2917 - 2968
Alignment:
Q  297 agctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    |||||||||||||||||||| ||||||||| |||| |||||| ||||||||||    
T  2917 agctaggagcaaaattgaagcctaagctagggagactaacct-actaaggtaa 2968  T

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Target: scaffold0589 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0589
Description:

Target: scaffold0589; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 349
Target Start/End: Complemental strand, 8204 - 8150
Alignment:
Q  295 agagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    |||||||||||| |||||||||  |||||||| | |||||| |||||||||||||    
T  8204 agagctaggagctaaattgaagcttaagctagggggattaatctaactaaggtaa 8150  T

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Target: scaffold0058 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 349
Target Start/End: Original strand, 70154 - 70208
Alignment:
Q  295 agagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    |||||||||||||||| |||||  |||||||| | |||||| |||||||||||||    
T  70154 agagctaggagcaaaaatgaagcttaagctagggggattaatctaactaaggtaa 70208  T

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Target: scaffold0035 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 349
Target Start/End: Original strand, 109309 - 109363
Alignment:
Q  295 agagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    ||||||||||| |||||||| | ||||| ||| |||||||| |||||||||||||    
T  109309 agagctaggagaaaaattgatgcctaaggtagggagattaatctaactaaggtaa 109363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 349
Target Start/End: Original strand, 117810 - 117864
Alignment:
Q  295 agagctaggagcaaaattgaagtctaagctagagagattaacctaactaaggtaa 349  Q
    ||||||||||| |||||||| | ||||| ||| |||||||| |||||||||||||    
T  117810 agagctaggagaaaaattgatgcctaaggtagggagattaatctaactaaggtaa 117864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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