View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20183_high_2 (Length: 632)
Name: NF20183_high_2
Description: NF20183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20183_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 35 - 542
Target Start/End: Original strand, 43231490 - 43231970
Alignment:
| Q |
35 |
ccaaatgcttcaaatgaaaagccaaacaaacataccttgaacaatacacgagtatttaaagaatcaacaacccgacagaaacaaccagccaacacatcga |
134 |
Q |
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| T |
43231490 |
ccaaatgcttcaaatcaaaagccaaacaaacataccttgaacaatacacgagtatttaaagaatcaacaacacgacagaaacaaccagccaacgcatcga |
43231589 |
T |
|
| Q |
135 |
ttcagcaaattaaacaaacaaaatcgaatttattaagatgtcaatgtaaaggatgaagagttaagcatgggaatcaagtaaatacatgcatcaacccaag |
234 |
Q |
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| T |
43231590 |
ttcagcaaa-----caaacaaaatcgaatttattaagatgtcaatgtaaaggatgaagagttaagcgtgggaatcaagtaaatatatg---------agg |
43231675 |
T |
|
| Q |
235 |
aggtaatggatttggtcaaggaaaaagaaaaaggagaggaggagaataaagtgtggcaacagtgctataattagcnnnnnnnngttctattctagtggaa |
334 |
Q |
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| T |
43231676 |
aggtaatggatttggtcaagga-------------gaggaggagaataaagtgtggcaacagtgctataattagcaaaaaaaagttctattctagtggaa |
43231762 |
T |
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| Q |
335 |
attatcaggttgacgaaccagtaagatccatttgttgggcattaatgaaataacttttggttttatttatcatttcccaagtgtgtatatcttgaaaggt |
434 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
43231763 |
attatcaggttgacgagccagtaagatccatttgttgggcattaatgaaataacttttggttttatttatcatttcccaagtgtgtatagcttgaaaggt |
43231862 |
T |
|
| Q |
435 |
gctcaatgccgtttcaaataatttgaatgttttgaatgatgtcgacaaacaattggaaaggaaactgctctatgcgccttttaattactcacaactctcc |
534 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
43231863 |
gctcaatgccgtttcaaataatttgaatgtttcgaatgatgtcgacaaacaattggaaaggaaactgctctatgcgccttttaatcactcacaactctcc |
43231962 |
T |
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