View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20183_high_22 (Length: 318)
Name: NF20183_high_22
Description: NF20183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20183_high_22 |
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Alignment Details
Target: chr5 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 14 - 301
Target Start/End: Complemental strand, 37041214 - 37040927
Alignment:
| Q |
14 |
catcaccaacctaaaacaattcaattaacaatcttaattaatcaacttcataattctcttaaatcaatgtaaccaaattaaattacctctgcccacaaaa |
113 |
Q |
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| T |
37041214 |
catcaccaacctaaaacaattcaattaacaatcttaattaatcaacttcataattctcttaaatcaatgtaaccaaattaaattacttctgcccacaaaa |
37041115 |
T |
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| Q |
114 |
catttggactagtgtgagctttgatgaaataatcagtgccccatttgattgcttccattgtgtgttgtaattcaccagcaccttcaatttcttacaaata |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
37041114 |
catttggactagtgtgagctttgatgaaataatcagtgccccatttgattgcttccattgtgtgttgtaattcaccagcaccttcaatttcttgcaaata |
37041015 |
T |
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| Q |
214 |
ttctatagcaccccatgaaagcattgtcacagtaaatgccattggtaaaccaaattttacatgatcacctgcatcataataccctcct |
301 |
Q |
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| T |
37041014 |
ttctatagcaccccatgaaagcattgtcacagtaaatgccattggtaaaccaaattttacatgatcacctgcatcataataccctcct |
37040927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 84; Significance: 7e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 97 - 300
Target Start/End: Original strand, 36272645 - 36272848
Alignment:
| Q |
97 |
tacctctgcccacaaaacatttggactagtgtgagctttgatgaaataatcagtgccccatttgattgcttccattgtgtgttgtaattcaccagcacct |
196 |
Q |
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||||||||||||||| |||||||| ||||| ||||||||||||||||||||||| |||||||| |||||||||||| || | ||||||||| | |
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| T |
36272645 |
tacctctgcccacaacacatttgggctagtatgagctttgatgaaataatcagttccccatttaattgcttccattacatgaccaagttcaccagcttca |
36272744 |
T |
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| Q |
197 |
tcaatttcttacaaatattctatagcaccccatgaaagcattgtcacagtaaatgccattggtaaaccaaattttacatgatcacctgcatcataatacc |
296 |
Q |
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| T |
36272745 |
acaatttcttgcctaaactcaataacactccatgacaacattgtgacagtaaatgccattggtaaaccaaatttcacatgatcacctgcatcatagtacc |
36272844 |
T |
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| Q |
297 |
ctcc |
300 |
Q |
| |
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|||| |
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| T |
36272845 |
ctcc |
36272848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 41915381 - 41915316
Alignment:
| Q |
226 |
ccatgaaagcattgtcacagtaaatgccattggtaaaccaaattttacatgatcacctgcatcata |
291 |
Q |
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|||||| | |||||| |||||||||||||||||||| |||||||| |||| ||| ||||||||||| |
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| T |
41915381 |
ccatgacatcattgtaacagtaaatgccattggtaacccaaatttcacattatcccctgcatcata |
41915316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 300
Target Start/End: Original strand, 28582400 - 28582482
Alignment:
| Q |
218 |
atagcaccccatgaaagcattgtcacagtaaatgccattggtaaaccaaattttacatgatcacctgcatcataataccctcc |
300 |
Q |
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||||| ||||||| ||||||||| ||| | | |||||||||| ||||| || |||||||||||||||||||| |||||||| |
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| T |
28582400 |
atagccccccatgcaagcattgtgacactgtaagccattggtagcccaaacttcacatgatcacctgcatcatagtaccctcc |
28582482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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