View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20183_high_27 (Length: 275)

Name: NF20183_high_27
Description: NF20183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20183_high_27
NF20183_high_27
[»] chr4 (2 HSPs)
chr4 (95-258)||(46166803-46166970)
chr4 (95-137)||(46166339-46166381)
[»] chr6 (2 HSPs)
chr6 (95-258)||(18101749-18101918)
chr6 (95-137)||(18102319-18102361)
[»] chr3 (2 HSPs)
chr3 (95-258)||(34832109-34832287)
chr3 (95-137)||(34832710-34832752)
[»] chr5 (1 HSPs)
chr5 (95-137)||(6956928-6956970)


Alignment Details
Target: chr4 (Bit Score: 109; Significance: 7e-55; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 95 - 258
Target Start/End: Complemental strand, 46166970 - 46166803
Alignment:
Q  95 taaacggtcatgatcaaattccactaaacaaggattggcacacatgaatnnnnnnn-cacgtatcctctgctcaagaaacgtgttgcttcctcttctata 193  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||        || ||||||||||||||||||||||| ||||||||||||||||    
T  46166970 taaacggtcatgatcaaattccactaaacaaggattggcacacttgaataaaaaaaacatgtatcctctgctcaagaaacgtgctgcttcctcttctata 46166871  T
Q  194 tttttc---gttttccatacgttttcctcttcaattttttaaatctgcaattagacttgagagttatg 258  Q
    ||||||   |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  46166870 tttttcctggttttccatacgtttttctcttcaattttttaaatctgcaattagacttgagagttatg 46166803  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 95 - 137
Target Start/End: Original strand, 46166339 - 46166381
Alignment:
Q  95 taaacggtcatgatcaaattccactaaacaaggattggcacac 137  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  46166339 taaacggtcatgatcaaattccactaaacaaggattggcacac 46166381  T

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Target: chr6 (Bit Score: 101; Significance: 4e-50; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 95 - 258
Target Start/End: Original strand, 18101749 - 18101918
Alignment:
Q  95 taaacggtcatgatcaaattccactaaacaaggattggcacacatgaatnnnnnnn---cacgtatcctctgctcaagaaacgtgttgcttcctcttcta 191  Q
    |||||||| |||||||||||||||||||||||||||| ||||| |||||          ||||||||||||||||||||||||||| |||||||||||||    
T  18101749 taaacggttatgatcaaattccactaaacaaggattgacacacttgaataaaaaaaaaacacgtatcctctgctcaagaaacgtgtcgcttcctcttcta 18101848  T
Q  192 tatttttc---gttttccatacgttttcctcttcaattttttaaatctgcaattagacttgagagttatg 258  Q
    ||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  18101849 tatttttcctggttttccatacgttttcctcttcaattttttaaatctgcaattagacttgagggttatg 18101918  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 95 - 137
Target Start/End: Complemental strand, 18102361 - 18102319
Alignment:
Q  95 taaacggtcatgatcaaattccactaaacaaggattggcacac 137  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  18102361 taaacggtcatgatcaaattccactaaataaggattggcacac 18102319  T

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Target: chr3 (Bit Score: 91; Significance: 4e-44; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 95 - 258
Target Start/End: Original strand, 34832109 - 34832287
Alignment:
Q  95 taaacggtcatgatcaaattccactaaacaaggattggcacacatgaatnnnnnnncacg------------tatcctctgctcaagaaacgtgttgctt 182  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||        |||            ||||||||||||||||||||||| ||||    
T  34832109 taaacggtcatgatcaaattccactaaacaaggattggcacacttgaataaaaataaacggtcatgatcaaatatcctctgctcaagaaacgtgtcgctt 34832208  T
Q  183 cctcttctatatttttc---gttttccatacgttttcctcttcaattttttaaatctgcaattagacttgagagttatg 258  Q
    |||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34832209 cctcttctatatttttcctggttttccatacgttttcctcttcaattttttaaatctgcaattagacttgagagttatg 34832287  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 95 - 137
Target Start/End: Complemental strand, 34832752 - 34832710
Alignment:
Q  95 taaacggtcatgatcaaattccactaaacaaggattggcacac 137  Q
    ||||||||||||||||||||||||||||||||||||| |||||    
T  34832752 taaacggtcatgatcaaattccactaaacaaggattgacacac 34832710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 95 - 137
Target Start/End: Complemental strand, 6956970 - 6956928
Alignment:
Q  95 taaacggtcatgatcaaattccactaaacaaggattggcacac 137  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  6956970 taaacggtcatgatcaaattccactaaacaaggattggcacac 6956928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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